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Gholami S, Aarabi M, Grabowski SJ. Theoretical Insights into Bifurcated Intramolecular Dihydrogen Bonds. Chemphyschem 2024; 25:e202300849. [PMID: 38061993 DOI: 10.1002/cphc.202300849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/05/2023] [Indexed: 01/11/2024]
Abstract
Two-ring intramolecular π-electron delocalization assisted dihydrogen bonds existing in (1Z,4Z)-1,4-dipentene-3-bora-1,5-diol and its symmetrically substituted derivatives have been analysed here since the MP2/6-311++G(d,p) calculations on these systems were performed. The influence of the coexistence of two intramolecular dihydrogen bonded rings in these molecular structures on properties of intramolecular dihydrogen bonds as well as on the π-electron delocalization within these rings was investigated. The comparison with corresponding structures of typical two-ring, so-called resonance-assisted, RAHB, systems was performed. The results of calculations show that such rings' coexistence leads to the weakening of dihydrogen bonds, similarly as for the typical two-ring RAHB systems. The Quantum Theory of ''Atoms in Molecules'' (QTAIM) was also applied here to get more details about the nature of dihydrogen bonds. Correlations between dihydrogen bond strength measures and other energetic, geometrical and topological parameters were also analysed. It was found that characteristics of bond critical points as well as of ring critical points are useful to estimate the strength of intramolecular dihydrogen bonds in two-ring dihydrogen bonded systems discussed here. The Natural Bond Orbital, NBO, approach parameters are also discussed as useful ones to describe properties of dihydrogen bonded systems.
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Affiliation(s)
- Samira Gholami
- Department of Chemistry, University of Isfahan, Isfahan, 81746-73441, Iran
| | - Mohammad Aarabi
- Department of Chemistry, University of Isfahan, Isfahan, 81746-73441, Iran
| | - Sławomir J Grabowski
- Polimero eta Material Aurreratuak: Fisika, Kimika eta Teknologia, Kimika Fakultatea, Euskal Herriko Unibertsitatea UPV/EHU & Donostia International Physics Center (DIPC), PK 1072, 20080, Donostia, Spain
- Ikerbasque, Basque Foundation for Science, 48011, Bilbao, Spain
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2
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Arribas A, Calvelo M, Fernández DF, Rodrigues CAB, Mascareñas JL, López F. Highly Enantioselective Iridium(I)‐Catalyzed Hydrocarbonation of Alkenes: A Versatile Approach to Heterocyclic Systems Bearing Quaternary Stereocenters. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202105776] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Andrés Arribas
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Martín Calvelo
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - David F. Fernández
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Catarina A. B. Rodrigues
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - José L. Mascareñas
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Fernando López
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
- Misión Biológica de Galicia Consejo Superior de Investigaciones Científicas (CSIC) 36080 Pontevedra Spain
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3
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Arribas A, Calvelo M, Fernández DF, Rodrigues CAB, Mascareñas JL, López F. Highly Enantioselective Iridium(I)-Catalyzed Hydrocarbonation of Alkenes: A Versatile Approach to Heterocyclic Systems Bearing Quaternary Stereocenters. Angew Chem Int Ed Engl 2021; 60:19297-19305. [PMID: 34137152 PMCID: PMC8456945 DOI: 10.1002/anie.202105776] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 06/10/2021] [Indexed: 12/29/2022]
Abstract
We report a versatile, highly enantioselective intramolecular hydrocarbonation reaction that provides a direct access to heteropolycyclic systems bearing chiral quaternary carbon stereocenters. The method, which relies on an iridium(I)/bisphosphine chiral catalyst, is particularly efficient for the synthesis of five-, six- and seven-membered fused indole and pyrrole products, bearing one and two stereocenters, with enantiomeric excesses of up to >99 %. DFT computational studies allowed to obtain a detailed mechanistic profile and identify a cluster of weak non-covalent interactions as key factors to control the enantioselectivity.
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Affiliation(s)
- Andrés Arribas
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Martín Calvelo
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - David F. Fernández
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Catarina A. B. Rodrigues
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - José L. Mascareñas
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Fernando López
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
- Misión Biológica de GaliciaConsejo Superior de Investigaciones Científicas (CSIC)36080PontevedraSpain
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4
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Riu MLY, Bistoni G, Cummins CC. Understanding the Nature and Properties of Hydrogen-Hydrogen Bonds: The Stability of a Bulky Phosphatetrahedrane as a Case Study. J Phys Chem A 2021; 125:6151-6157. [PMID: 34236879 DOI: 10.1021/acs.jpca.1c04046] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Recently, the first mixed C/P phosphatetrahedranes (tBuC)3P and (tBuCP)2 were reported. Unlike (tBuCP)2, (tBuC)3P exhibits remarkable thermal stability, which can be partially attributed to a network of nine hydrogen-hydrogen bonds (HHBs) localized between the tert-butyl substituents. The stabilizing contribution arising from this network of HHBs was obtained from local energy decomposition (LED) analysis calculated at the domain-based local pair natural orbital CCSD(T) (DLPNO-CCSD(T)) level of theory. These calculations suggest that each HHB contributes approximately -0.7 kcal/mol of stabilization; however, the net stabilization energy likely lies between -0.25 and -0.5 kcal/mol because of steric repulsion. Spatial analysis of the London dispersion energy via a dispersion interaction density (DID) plot reveals that the DID surface is localized at key C-H groups involved in HHBs, consistent with London dispersion interactions predominantly arising from HHBs. In addition, we present a computed mechanism that supports a phosphinidenoid species as a key reaction intermediate in the synthesis of (tBuC)3P.
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Affiliation(s)
- Martin-Louis Y Riu
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Giovanni Bistoni
- Max-Planck-Institut für Kohlenforschung, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Christopher C Cummins
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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Shiryaev AA, Burkhanova TM, Mitoraj MP, Kukulka M, Sagan F, Mahmoudi G, Babashkina MG, Bolte M, Safin DA. Supramolecular structures of Ni II and Cu II with the sterically demanding Schiff base dyes driven by cooperative action of preagostic and other non-covalent interactions. IUCRJ 2021; 8:351-361. [PMID: 33953922 PMCID: PMC8086159 DOI: 10.1107/s2052252521000610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 01/18/2021] [Indexed: 06/12/2023]
Abstract
This work reports on synthesis and extensive experimental and theoretical investigations on photophysical, structural and thermal properties of the NiII and CuII discrete mononuclear homoleptic complexes [Ni(L I,II)2] and [Cu(L I,II)2] fabricated from the Schiff base dyes o-HOC6H4-CH=N-cyclo-C6H11 (HL I) and o-HOC10H6-CH=N-cyclo-C6H11 (HL II), containing the sterically crowding cyclo-hexyl units. The six-membered metallocycles adopt a clearly defined envelope conformation in [Ni(L II)2], while they are much more planar in the structures of [Ni(L I)2] and [Cu(L I,II)2]. It has been demonstrated by in-depth bonding analyses based on the ETS-NOCV and Interacting Quantum Atoms energy-decomposition schemes that application of the bulky substituents, containing several C-H groups, has led to the formation of a set of classical and unintuitive intra- and inter-molecular interactions. All together they are responsible for the high stability of [Ni(L I,II)2] and [Cu(L I,II)2]. More specifically, London dispersion dominated intramolecular C-H⋯O, C-H⋯N and C-H⋯H-C hydrogen bonds are recognized and, importantly, the attractive, chiefly the Coulomb driven, preagostic (not repulsive anagostic) C-H⋯Ni/Cu interactions have been discovered despite their relatively long distances (∼2.8-3.1 Å). All the complexes are further stabilized by the extremely efficient intermolecular C-H⋯π(benzene) and C-H⋯π(chelate) interactions, where both the charge-delocalization and London dispersion constituents appear to be crucial for the crystal packing of the obtained complexes. All the complexes were found to be photoluminescent in CH2Cl2, with [Cu(L II)2] exhibiting the most pronounced emission - the time-dependent density-functional-theory computations revealed that it is mostly caused by metal-to-ligand charge-transfer transitions.
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Affiliation(s)
- Alexey A. Shiryaev
- University of Tyumen, Volodarskogo Street 6, Tyumen, 625003, Russian Federation
- Innovation Center for Chemical and Pharmaceutical Technologies, Ural Federal University named after the First President of Russia B. N. Yeltsin, Mira Street 19, Ekaterinburg, 620002, Russian Federation
| | - Tatyana M. Burkhanova
- University of Tyumen, Volodarskogo Street 6, Tyumen, 625003, Russian Federation
- Kurgan State University, Sovetskaya Street 63/4, 640020, Russian Federation
| | - Mariusz P. Mitoraj
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, Kraków, 30-387, Poland
| | - Mercedes Kukulka
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, Kraków, 30-387, Poland
| | - Filip Sagan
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, Kraków, 30-387, Poland
| | - Ghodrat Mahmoudi
- Department of Chemistry, Faculty of Science, University of Maragheh, PO Box 55181-83111, Maragheh, Iran
| | - Maria G. Babashkina
- Institute of Condensed Matter and Nanosciences, Université Catholique de Louvain, Place L. Pasteur 1, Louvain-la-Neuve, 1348, Belgium
| | - Michael Bolte
- Institut für Anorganische Chemie, J.-W.-Goethe-Universität, Frankfurt/Main, Germany
| | - Damir A. Safin
- University of Tyumen, Volodarskogo Street 6, Tyumen, 625003, Russian Federation
- Innovation Center for Chemical and Pharmaceutical Technologies, Ural Federal University named after the First President of Russia B. N. Yeltsin, Mira Street 19, Ekaterinburg, 620002, Russian Federation
- Kurgan State University, Sovetskaya Street 63/4, 640020, Russian Federation
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6
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Zhang L, Jin Y, Tao G, Gong Y, Hu Y, He L, Zhang W. Desymmetrized Vertex Design toward a Molecular Cage with Unusual Topology. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007454] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Lei Zhang
- College of Chemistry Sichuan University Chengdu 610064 China
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yinghua Jin
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Guo‐Hong Tao
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Yu Gong
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yiming Hu
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Ling He
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Wei Zhang
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
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7
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Zhang L, Jin Y, Tao G, Gong Y, Hu Y, He L, Zhang W. Desymmetrized Vertex Design toward a Molecular Cage with Unusual Topology. Angew Chem Int Ed Engl 2020; 59:20846-20851. [DOI: 10.1002/anie.202007454] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 07/08/2020] [Indexed: 01/12/2023]
Affiliation(s)
- Lei Zhang
- College of Chemistry Sichuan University Chengdu 610064 China
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yinghua Jin
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Guo‐Hong Tao
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Yu Gong
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yiming Hu
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Ling He
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Wei Zhang
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
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Mitoraj MP, Sagan F, Szczepanik DW, de Lange JH, Ptaszek AL, van Niekerk DME, Cukrowski I. Origin of Hydrocarbons Stability from a Computational Perspective: A Case Study of Ortho-Xylene Isomers. Chemphyschem 2020; 21:494-502. [PMID: 31990431 DOI: 10.1002/cphc.202000066] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Indexed: 01/12/2023]
Abstract
It is shown herein that intuitive and text-book steric-clash based interpretation of the higher energy "in-in" xylene isomer (as arising solely from the repulsive CH⋅⋅⋅HC contact) with respect to the corresponding global-minimum "out-out" configuration (where the clashing C-H bonds are tilted out) is misleading. It is demonstrated that the two hydrogen atoms engaged in the CH⋅⋅⋅HC contact in "in-in" are involved in attractive interaction so they cannot explain the lower stability of this isomer. We have proven, based on the arsenal of modern bonding descriptors (EDDB, HOMA, NICS, FALDI, ETS-NOCV, DAFH, FAMSEC, IQA), that in order to understand the relative stability of "in-in" versus "out-out" xylenes isomers one must consider the changes in the electronic structure encompassing the entire molecules as arising from the cooperative action of hyperconjugation, aromaticity and unintuitive London dispersion plus charge delocalization based intra-molecular CH⋅⋅⋅HC interactions.
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Affiliation(s)
- Mariusz P Mitoraj
- Department of Theoretical Chemistry Faculty of Chemistry, Jagiellonian University in Krakow, Gronostajowa 2, 30-87, Krakow, Poland
| | - Filip Sagan
- Department of Theoretical Chemistry Faculty of Chemistry, Jagiellonian University in Krakow, Gronostajowa 2, 30-87, Krakow, Poland
| | - Dariusz W Szczepanik
- Department of Theoretical Chemistry Faculty of Chemistry, Jagiellonian University in Krakow, Gronostajowa 2, 30-87, Krakow, Poland
| | - Jurgens H de Lange
- Department of Chemistry Faculty of Natural and Agricultural Sciences, University of Pretoria, Lynnwood Road, Hatfield, Pretoria, 0002, South Africa
| | - Aleksandra L Ptaszek
- Department of Theoretical Chemistry Faculty of Chemistry, Jagiellonian University in Krakow, Gronostajowa 2, 30-87, Krakow, Poland
| | - Daniel M E van Niekerk
- Department of Chemistry Faculty of Natural and Agricultural Sciences, University of Pretoria, Lynnwood Road, Hatfield, Pretoria, 0002, South Africa
| | - Ignacy Cukrowski
- Department of Chemistry Faculty of Natural and Agricultural Sciences, University of Pretoria, Lynnwood Road, Hatfield, Pretoria, 0002, South Africa
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Śliwa P, Mitoraj MP, Sagan F, Handzlik J. Formation of active species from ruthenium alkylidene catalysts-an insight from computational perspective. J Mol Model 2019; 25:331. [PMID: 31701244 DOI: 10.1007/s00894-019-4202-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Accepted: 09/03/2019] [Indexed: 10/25/2022]
Abstract
Ruthenium alkylidene complexes are commonly used as olefin metathesis catalysts. Initiation of the catalytic process requires formation of a 14-electron active ruthenium species via dissociation of a respective ligand. In the present work, this initiation step has been computationally studied for the Grubbs-type catalysts (H2IMes)(PCy3)(Cl)2Ru=CHPh, (H2IMes)(PCy3)(Cl)2Ru=CH-CH=CMe2 and (H2IMes)(3-Br-py)2(Cl)2Ru=CHPh, and the Hoveyda-Grubbs-type catalysts (H2IMes)(Cl)2Ru=CH(o-OiPrC6H4), (H2IMes)(Cl)2Ru=CH(5-NO2-2-OiPrC6H3), and (H2IMes)(Cl)2Ru=CH(2-OiPr-3-PhC6H3), using density functional theory (DFT). Additionally, the extended-transition-state combined with the natural orbitals for the chemical valence (ETS-NOCV) and the interacting quantum atoms (IQA) energy decomposition methods were applied. The computationally determined activity order within both families of the catalysts and the activation parameters are in agreement with reported experimental data. The significance of solvent simulation and the basis set superposition error (BSSE) correction is discussed. ETS-NOCV demonstrates that the bond between the dissociating ligand and the Ru-based fragment is largely ionic followed by the charge delocalizations: σ(Ru-P) and π(Ru-P) and the secondary CH…Cl, CH…π, and CH…HC interactions. In the case of transition state structures, the majority of stabilization stems from London dispersion forces exerted by the efficient CH…Cl, CH…π, and CH…HC interactions. Interestingly, the height of the electronic dissociation barriers is, however, directly connected with the prevalent (unfavourable) changes in the electrostatic and orbital interaction contributions despite the favourable relief in Pauli repulsion and geometry reorganization terms during the activation process. According to the IQA results, the isopropoxy group in the Hoveyda-Grubbs-type catalysts is an efficient donor of intra-molecular interactions which are important for the activity of these catalysts.
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Affiliation(s)
- Paweł Śliwa
- Faculty of Chemical Engineering and Technology, Cracow University of Technology, ul. Warszawska 24, 31-155, Kraków, Poland
| | - Mariusz P Mitoraj
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, ul. Gronostajowa 2, 30-387, Kraków, Poland.
| | - Filip Sagan
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, ul. Gronostajowa 2, 30-387, Kraków, Poland
| | - Jarosław Handzlik
- Faculty of Chemical Engineering and Technology, Cracow University of Technology, ul. Warszawska 24, 31-155, Kraków, Poland.
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Sagan F, Mitoraj MP. Kinetic and Potential Energy Contributions to a Chemical Bond from the Charge and Energy Decomposition Scheme of Extended Transition State Natural Orbitals for Chemical Valence. J Phys Chem A 2019; 123:4616-4622. [PMID: 31058501 DOI: 10.1021/acs.jpca.9b01420] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
This work provides novel physical insight into the nature of a chemical bond by exploring qualitative and quantitative relations between the natural orbitals for chemical valence (NOCV)-based deformation density bonding channels Δρ i ( i = σ, π, δ, etc.) and the corresponding kinetic Δ Ti and potential energy Δ Vi contributions within the charge and energy decomposition scheme ETS-NOCV implemented in the Kohn-Sham-based Amsterdam Density Functional (ADF) package. It is determined that interfragment dative and covalent-type electron charge reorganizations upon formation of a series of strong and weak bonds employing main-group elements are due to lowering of the negative kinetic energy contributions, as opposed to the intrafragment polarizations (e.g., hyperconjugations in ethane), which are, in contrary, driven by the potential energy (electrostatic) component. Complementary, formation of π-contributions in N2 is accompanied by lowering of both kinetic and potential energy constituents. Remarkably, well-known globally stabilizing back-donation (M → ligand, where M is a transition metal) and donation (ligand → M) processes, ubiquitous in organometallic species, have been discovered for the first time to be driven by the opposite Δ Ti/Δ Vi mechanisms, namely, the former contribution is associated with the negative kinetic term (which outweighs the positive potential energy), whereas the latter charge delocalization into electrophilic transition metals leads to an attractive electrostatic stabilization (and positive kinetic energy).
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Affiliation(s)
- Filip Sagan
- Department of Theoretical Chemistry, Faculty of Chemistry , Jagiellonian University , R. Gronostajowa 2 , 30-387 Krakow , Poland
| | - Mariusz P Mitoraj
- Department of Theoretical Chemistry, Faculty of Chemistry , Jagiellonian University , R. Gronostajowa 2 , 30-387 Krakow , Poland
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11
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Mitoraj MP, Babashkina MG, Robeyns K, Sagan F, Szczepanik DW, Seredina YV, Garcia Y, Safin DA. Chameleon-like Nature of Anagostic Interactions and Its Impact on Metalloaromaticity in Square-Planar Nickel Complexes. Organometallics 2019. [DOI: 10.1021/acs.organomet.9b00062] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mariusz P. Mitoraj
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Cracow, Poland
| | - Maria G. Babashkina
- Institute of Condensed Matter and Nanosciences, Université Catholique de Louvain, Place L. Pasteur 1, 1348 Louvain-la-Neuve, Belgium
- Institute of Chemistry, University of Tyumen, Perekopskaya Street 15a, 625003 Tyumen, Russian Federation
| | - Koen Robeyns
- Institute of Condensed Matter and Nanosciences, Université Catholique de Louvain, Place L. Pasteur 1, 1348 Louvain-la-Neuve, Belgium
| | - Filip Sagan
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Cracow, Poland
| | - Dariusz W. Szczepanik
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Cracow, Poland
| | - Yulia V. Seredina
- Institute of Chemistry, University of Tyumen, Perekopskaya Street 15a, 625003 Tyumen, Russian Federation
| | - Yann Garcia
- Institute of Condensed Matter and Nanosciences, Université Catholique de Louvain, Place L. Pasteur 1, 1348 Louvain-la-Neuve, Belgium
| | - Damir A. Safin
- Institute of Condensed Matter and Nanosciences, Université Catholique de Louvain, Place L. Pasteur 1, 1348 Louvain-la-Neuve, Belgium
- Institute of Chemistry, University of Tyumen, Perekopskaya Street 15a, 625003 Tyumen, Russian Federation
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12
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Mitoraj MP, Afkhami FA, Mahmoudi G, Khandar AA, Gurbanov AV, Zubkov FI, Waterman R, Babashkina MG, Szczepanik DW, Jena HS, Safin DA. Structural versatility of the quasi-aromatic Möbius type zinc(ii)-pseudohalide complexes – experimental and theoretical investigations. RSC Adv 2019; 9:23764-23773. [PMID: 35530624 PMCID: PMC9069493 DOI: 10.1039/c9ra05276c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 08/23/2019] [Accepted: 07/24/2019] [Indexed: 12/03/2022] Open
Abstract
In this contribution we report for the first time fabrication, isolation, structural and theoretical characterization of the quasi-aromatic Möbius complexes [Zn(NCS)2LI] (1), [Zn2(μ1,1-N3)2(LI)2][ZnCl3(MeOH)]2·6MeOH (2) and [Zn(NCS)LII]2[Zn(NCS)4]·MeOH (3), constructed from 1,2-diphenyl-1,2-bis((phenyl(pyridin-2-yl)methylene)hydrazono)ethane (LI) or benzilbis(acetylpyridin-2-yl)methylidenehydrazone (LII), respectively, and ZnCl2 mixed with NH4NCS or NaN3. Structures 1–3 are dictated by both the bulkiness of the organic ligand and the nature of the inorganic counter ion. As evidenced from single crystal X-ray diffraction data species 1 has a neutral discrete heteroleptic mononuclear structure, whereas, complexes 2 and 3 exhibit a salt-like structure. Each structure contains a ZnII atom chelated by one tetradentate twisted ligand LI creating the unusual Möbius type topology. Theoretical investigations based on the EDDB method allowed us to determine that it constitutes the quasi-aromatic Möbius motif where a metal only induces the π-delocalization solely within the ligand part: 2.44|e| in 3, 3.14|e| in 2 and 3.44|e| in 1. It is found, that the degree of quasi-aromatic π-delocalization in the case of zinc species is significantly weaker (by ∼50%) than the corresponding estimations for cadmium systems – it is associated with the Zn–N bonds being more polar than the related Cd–N connections. The ETS-NOCV showed, that the monomers in 1 are bonded primarily through London dispersion forces, whereas long-range electrostatic stabilization is crucial in 2 and 3. A number of non-covalent interactions are additionally identified in the lattices of 1–3. Interplay between various types of non-covalent interactions allowed for isolation of rare examples of Zn(ii) based quasi-aromatic Möbius type species.![]()
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Affiliation(s)
- Mariusz P. Mitoraj
- Department of Theoretical Chemistry
- Faculty of Chemistry
- Jagiellonian University
- 30-387 Cracow
- Poland
| | | | - Ghodrat Mahmoudi
- Department of Chemistry
- Faculty of Science
- University of Maragheh
- Maragheh
- Iran
| | - Ali Akbar Khandar
- Department of Inorganic Chemistry
- Faculty of Chemistry
- University of Tabriz
- Tabriz
- Iran
| | - Atash V. Gurbanov
- Department of Chemistry
- Baku State University
- Baku
- Azerbaijan
- Centro de Química Estrutural
| | - Fedor I. Zubkov
- Organic Chemistry Department
- Faculty of Science
- Peoples' Friendship University of Russia (RUDN University)
- Moscow
- Russian Federation
| | - Rory Waterman
- Department of Chemistry
- University of Vermont
- Burlington
- USA
| | | | - Dariusz W. Szczepanik
- Department of Theoretical Chemistry
- Faculty of Chemistry
- Jagiellonian University
- 30-387 Cracow
- Poland
| | | | - Damir A. Safin
- Institute of Chemistry
- University of Tyumen
- 625003 Tyumen
- Russian Federation
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