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Gilissen PJ, Duez Q, Tripodi GL, Dekker MMJ, Ouyang J, Dhbaibi K, Vanthuyne N, Crassous J, Roithová J, Elemans JAAW, Nolte RJM. Kinetic enantio-recognition of chiral viologen guests by planar-chiral porphyrin cages. Chem Commun (Camb) 2023; 59:13974-13977. [PMID: 37942536 PMCID: PMC10667586 DOI: 10.1039/d3cc04934e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 11/02/2023] [Indexed: 11/10/2023]
Abstract
The kinetic enantio-recognition of chiral viologen guests by planar-chiral porphyrin cage compounds, measured in terms of ΔΔG‡on, is determined by the planar-chirality of the host and influenced by the size, as measured by ion mobility-mass spectrometry, but not the chirality of its substituents.
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Affiliation(s)
- Pieter J Gilissen
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Quentin Duez
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Guilherme L Tripodi
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Magda M J Dekker
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Jiangkun Ouyang
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Kais Dhbaibi
- Univ Rennes, CNRS, Institut des Sciences Chimiques de Rennes, ISCR-UMR 6226, F-35000 Rennes, France
| | - Nicolas Vanthuyne
- Aix-Marseille University, CNRS, Centrale Marseille, iSm2, 13397, Marseille Cedex 20, France
| | - Jeanne Crassous
- Univ Rennes, CNRS, Institut des Sciences Chimiques de Rennes, ISCR-UMR 6226, F-35000 Rennes, France
| | - Jana Roithová
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Johannes A A W Elemans
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Roeland J M Nolte
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
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Swartjes A, White PB, Bruekers JPJ, Elemans JAAW, Nolte RJM. Paramagnetic relaxation enhancement NMR as a tool to probe guest binding and exchange in metallohosts. Nat Commun 2022; 13:1846. [PMID: 35388004 PMCID: PMC8986849 DOI: 10.1038/s41467-022-29406-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 02/21/2022] [Indexed: 11/11/2022] Open
Abstract
Paramagnetic metallohost systems can bind guest molecules and find application as biomimetic catalysts. Due to the presence of the paramagnetic metal center, rigorous characterization of these systems by NMR spectroscopy can be very difficult. We report here that metallohost-guest systems can be studied by using the paramagnetic relaxation enhancement (PRE) effect. Manganese(III) porphyrin cage compounds are shown through their PRE to thread and bind viologen guests, including a polymeric one. The binding constants and dethreading activation parameters are lower than those of the metal-free porphyrin cage compounds, which is proposed to be a result of charge repulsion of the trivalent metal center and dicationic viologen guest. The threading rate of the manganese(III) porphyrin cage onto the polymer is more than 10 times faster than that of the non-metallated one, which is ascribed to initial binding of the cage to the polymer chain prior to threading, and to an entron effect. Paramagnetic metallohost systems are difficult to characterize. Here the authors report that the paramagnetic relaxation enhancement effect can be used to prove by nuclear magnetic resonance experiments that Mn(III) porphyrin cage compounds can bind and thread low molecular weight and polymeric guests.
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Affiliation(s)
- Anne Swartjes
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Paul B White
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Jeroen P J Bruekers
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Johannes A A W Elemans
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Roeland J M Nolte
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
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Controlling the length of porphyrin supramolecular polymers via coupled equilibria and dilution-induced supramolecular polymerization. Nat Commun 2022; 13:248. [PMID: 35017511 PMCID: PMC8752679 DOI: 10.1038/s41467-021-27831-2] [Citation(s) in RCA: 39] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 12/07/2021] [Indexed: 12/29/2022] Open
Abstract
Multi-component systems often display convoluted behavior, pathway complexity and coupled equilibria. In recent years, several ways to control complex systems by manipulating the subtle balances of interaction energies between the individual components have been explored and thereby shifting the equilibrium between different aggregate states. Here we show the enantioselective chain-capping and dilution-induced supramolecular polymerization with a Zn2+-porphyrin-based supramolecular system when going from long, highly cooperative supramolecular polymers to short, disordered aggregates by adding a monotopic Mn3+-porphyrin monomer. When mixing the zinc and manganese centered monomers, the Mn3+-porphyrins act as chain-cappers for Zn2+-porphyrin supramolecular polymers, effectively hindering growth of the copolymer and reducing the length. Upon dilution, the interaction between chain-capper and monomers weakens as the equilibria shift and long supramolecular polymers form again. This dynamic modulation of aggregate morphology and length is achieved through enantioselectivity in the aggregation pathways and concentration-sensitive equilibria. All-atom and coarse-grained molecular simulations provide further insights into the mixing of the species and their exchange dynamics. Our combined experimental and theoretical approach allows for precise control of molecular self-assembly and chiral discrimination in complex systems.
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Swartjes A, White PB, Lammertink M, Elemans JAAW, Nolte RJM. Host-Guest Exchange of Viologen Guests in Porphyrin Cage Compounds as Studied by Selective Exchange Spectroscopy (1D EXSY) NMR. Angew Chem Int Ed Engl 2021; 60:1254-1262. [PMID: 33016567 PMCID: PMC7839762 DOI: 10.1002/anie.202010335] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Indexed: 12/18/2022]
Abstract
Dynamics in complexes of porphyrin cage compounds and viologen-derived guest molecules are investigated by selective exchange NMR spectroscopy (1D EXSY). Exchange rates were found to be independent of excess guest concentration, revealing a dissociative exchange mechanism, which is accompanied by negative activation entropies, indicating significant reorganization of the host-guest complex during dissociation. Nonsymmetric viologen guests with bulky head groups had more unidirectional binding and slower exchange rates than guests with less-bulky head groups. Thermodynamic and kinetic studies revealed that the exchange process is primarily driven by the thermodynamics of binding and that guest binding can be influenced by introducing steric and electronic groups on the host . Exchange studies with guests bearing a polymer chain revealed that both slippage and full dissociation takes place and the rate constants for both processes were determined. The slippage rate constant revealed that for smaller guests exchange takes place nearly exclusively under thermodynamic control.
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Affiliation(s)
- Anne Swartjes
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525, AJ, Nijmegen, The Netherlands
| | - Paul B White
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525, AJ, Nijmegen, The Netherlands
| | - Marijn Lammertink
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525, AJ, Nijmegen, The Netherlands
| | - Johannes A A W Elemans
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525, AJ, Nijmegen, The Netherlands
| | - Roeland J M Nolte
- Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525, AJ, Nijmegen, The Netherlands
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Gilissen PJ, Slootbeek AD, Ouyang J, Vanthuyne N, Bakker R, Elemans JAAW, Nolte RJM. Enantioselective synthesis of chiral porphyrin macrocyclic hosts and kinetic enantiorecognition of viologen guests. Chem Sci 2021; 12:1661-1667. [PMID: 34163926 PMCID: PMC8179042 DOI: 10.1039/d0sc05233g] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 12/22/2020] [Indexed: 01/02/2023] Open
Abstract
The construction of macromolecular hosts that are able to thread chiral guests in a stereoselective fashion is a big challenge. We herein describe the asymmetric synthesis of two enantiomeric C 2-symmetric porphyrin macrocyclic hosts that thread and bind different viologen guests. Time-resolved fluorescence studies show that these hosts display a factor 3 kinetic preference (ΔΔG ‡ on = 3 kJ mol-1) for threading onto the different enantiomers of a viologen guest appended with bulky chiral 1-phenylethoxy termini. A smaller kinetic selectivity (ΔΔG ‡ on = 1 kJ mol-1) is observed for viologens equipped with small chiral sec-butoxy termini. Kinetic selectivity is absent when the C 2-symmetric hosts are threaded onto chiral viologens appended with chiral tails in which the chiral moieties are located in the centers of the chains, rather than at the chain termini. The reason is that the termini of the latter guests, which engage in the initial stages of the threading process (entron effect), cannot discriminate because they are achiral, in contrast to the chiral termini of the former guests. Finally, our experiments show that the threading and de-threading rates are balanced in such a way that the observed binding constants are highly similar for all the investigated host-guest complexes, i.e. there is no thermodynamic selectivity.
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Affiliation(s)
- Pieter J Gilissen
- Institute for Molecules and Materials, Radboud University Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Annemiek D Slootbeek
- Institute for Molecules and Materials, Radboud University Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Jiangkun Ouyang
- Institute for Molecules and Materials, Radboud University Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | | | - Rob Bakker
- Institute for Molecules and Materials, Radboud University Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Johannes A A W Elemans
- Institute for Molecules and Materials, Radboud University Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Roeland J M Nolte
- Institute for Molecules and Materials, Radboud University Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
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Stout K, Peters TPJ, Mabesoone MFJ, Visschers FLL, Meijer EM, Klop J, van den Berg J, White PB, Rowan AE, Nolte RJM, Elemans JAAW. Double Porphyrin Cage Compounds. European J Org Chem 2020; 2020:7087-7100. [PMID: 33380897 PMCID: PMC7756431 DOI: 10.1002/ejoc.202001211] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Indexed: 01/01/2023]
Abstract
The synthesis and characterization of double porphyrin cage compounds are described. They consist of two porphyrins that are each attached to a diphenylglycoluril-based clip molecule via four ethyleneoxy spacers, and are linked together by a single alkyl chain using "click"-chemistry. Following a newly developed multistep synthesis procedure we report three of these double porphyrin cages, linked by spacers of different lengths, i.e. 3, 5, and 11 carbon atoms. The structures of the double porphyrin cages were fully characterized by NMR, which revealed that they consist of mixtures of two diastereoisomers. Their zinc derivatives are capable of forming sandwich-like complexes with the ditopic ligand 1,4-diazabicyclo[2,2,2]octane (dabco).
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Affiliation(s)
- Kathleen Stout
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Theo P. J. Peters
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Mathijs F. J. Mabesoone
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Fabian L. L. Visschers
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Eline M. Meijer
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Joëlle‐Rose Klop
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Jeroen van den Berg
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Paul B. White
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Alan E. Rowan
- Australian Institute for Bioengineering and Nanotechnology (AIBN), Corner College and Cooper Rds (Bldg 75)The University of Queensland4072Brisbane QldAustralia
| | - Roeland J. M. Nolte
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
| | - Johannes A. A. W. Elemans
- Institute for Molecules and MaterialsRadboud UniversityHeyendaalseweg 1356525AJ NijmegenThe Netherlands
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Swartjes A, White PB, Lammertink M, Elemans JAAW, Nolte RJM. Host–Guest Exchange of Viologen Guests in Porphyrin Cage Compounds as Studied by Selective Exchange Spectroscopy (1D EXSY) NMR. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202010335] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Anne Swartjes
- Radboud University Institute for Molecules and Materials Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Paul B. White
- Radboud University Institute for Molecules and Materials Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Marijn Lammertink
- Radboud University Institute for Molecules and Materials Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Johannes A. A. W. Elemans
- Radboud University Institute for Molecules and Materials Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Roeland J. M. Nolte
- Radboud University Institute for Molecules and Materials Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
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8
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Gilissen PJ, White PB, Berrocal JA, Vanthuyne N, Rutjes FPJT, Feringa BL, Elemans JAAW, Nolte RJM. Molecular motor-functionalized porphyrin macrocycles. Nat Commun 2020; 11:5291. [PMID: 33082343 PMCID: PMC7576194 DOI: 10.1038/s41467-020-19123-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 09/29/2020] [Indexed: 12/15/2022] Open
Abstract
Molecular motors and switches change conformation under the influence of an external stimulus, e.g. light. They can be incorporated into functional systems, allowing the construction of adaptive materials and switchable catalysts. Here, we present two molecular motor-functionalized porphyrin macrocycles for future photo-switchable catalysis. They display helical, planar and point chirality, and are diastereomers, which differ in the relative orientation of the motor and macrocyclic components. Fluorescence, UV-vis, and 1H NMR experiments reveal that the motor-functionalized macrocycles can bind and thread different variants of viologen guests, including a one-side blocked polymeric one of 30 repeat units. The latter feature indicates that the motor systems can find the open end of a polymer chain, thread on it, and move along the chain to eventually bind at the viologen trap, opening possibilities for catalytic writing on single polymer chains via chemical routes. Molecular motors and switches change conformation under the influence of an external stimulus and can be incorporated into functional systems, allowing the construction of adaptive materials and switchable catalysts. Here, the authors present two molecular motor-functionalized porphyrin macrocycles for future photo-switchable catalysis.
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Affiliation(s)
- Pieter J Gilissen
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Paul B White
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - José Augusto Berrocal
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Nicolas Vanthuyne
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | - Floris P J T Rutjes
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Ben L Feringa
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.
| | - Johannes A A W Elemans
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Roeland J M Nolte
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
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Kim D, Seo KD, Moon D, Shim YB, Lee SH, Jung OS. Chiral Pd 6L 8 Nanocube Pairs: Recognition of Chiral Amino Acids via Electrochemistry. Inorg Chem 2020; 59:5808-5812. [PMID: 32207297 DOI: 10.1021/acs.inorgchem.0c00095] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The self-assembly of PdX2 (X- = ClO4- and PF6-) with C3-symmetric l- and d-L [L = (2S,2'S,2″S)- and (2R,2'R,2″R)-[benzenetricarbonyltris(azanediyl)]tris(3-phenylpropane-2,1-diyl)triisonicotinate] produces the chiral nanocube pair [Pd6(l-L)8](X)12 and [Pd6(d-L)8](X)12 (X- = ClO4- and PF6-, respectively) with an inner cavity of 12.3 × 12.3 × 12.3 Å3. These chiral nanocubes are effective for the enantiorecognition of various chiral amino acids via the square-wave-voltammetry technique. In the present study, the site of enantiorecognition was confirmed by density functional theory calculated interactions between each nanocube and the chiral amino acids, and the calculated interactions were coincident with the shifts of the electrochemical oxidation potentials.
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Affiliation(s)
- Dongwon Kim
- Department of Chemistry, Pusan National University, Busan 46241, Korea
| | - Kyeong-Deok Seo
- Department of Chemistry, Pusan National University, Busan 46241, Korea
| | - Dohyun Moon
- Pohang Accelerator Laboratory, POSTECH, Pohang 37673, Korea
| | - Yoon-Bo Shim
- Department of Chemistry, Pusan National University, Busan 46241, Korea
| | - Sang Hak Lee
- Department of Chemistry, Pusan National University, Busan 46241, Korea
| | - Ok-Sang Jung
- Department of Chemistry, Pusan National University, Busan 46241, Korea
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Gilissen PJ, Swartjes A, Spierenburg B, Bruekers JP, Tinnemans P, White PB, Rutjes FP, Nolte RJ, Elemans JA. Rapid and scalable synthesis of chiral porphyrin cage compounds. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.07.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Elemans JAAW, Nolte RJM. Porphyrin cage compounds based on glycoluril – from enzyme mimics to functional molecular machines. Chem Commun (Camb) 2019; 55:9590-9605. [DOI: 10.1039/c9cc04372a] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
This Feature Article gives an overview of the application of glycoluril-based porphyrin cage compounds in host–guest chemistry, allosterically controlled self-assembly, biomimetic catalysis, and polymer encoding.
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Affiliation(s)
| | - Roeland J. M. Nolte
- Radboud University
- Institute for Molecules and Materials
- 6525 AJ Nijmegen
- The Netherlands
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