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Miwakeichi F, Galka A. Comparison of Bootstrap Methods for Estimating Causality in Linear Dynamic Systems: A Review. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1070. [PMID: 37510017 PMCID: PMC10378223 DOI: 10.3390/e25071070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 07/14/2023] [Accepted: 07/16/2023] [Indexed: 07/30/2023]
Abstract
In this study, we present a thorough comparison of the performance of four different bootstrap methods for assessing the significance of causal analysis in time series data. For this purpose, multivariate simulated data are generated by a linear feedback system. The methods investigated are uncorrelated Phase Randomization Bootstrap (uPRB), which generates surrogate data with no cross-correlation between variables by randomizing the phase in the frequency domain; Time Shift Bootstrap (TSB), which generates surrogate data by randomizing the phase in the time domain; Stationary Bootstrap (SB), which calculates standard errors and constructs confidence regions for weakly dependent stationary observations; and AR-Sieve Bootstrap (ARSB), a resampling method based on AutoRegressive (AR) models that approximates the underlying data-generating process. The uPRB method accurately identifies variable interactions but fails to detect self-feedback in some variables. The TSB method, despite performing worse than uPRB, is unable to detect feedback between certain variables. The SB method gives consistent causality results, although its ability to detect self-feedback decreases, as the mean block width increases. The ARSB method shows superior performance, accurately detecting both self-feedback and causality across all variables. Regarding the analysis of the Impulse Response Function (IRF), only the ARSB method succeeds in detecting both self-feedback and causality in all variables, aligning well with the connectivity diagram. Other methods, however, show considerable variations in detection performance, with some detecting false positives and others only detecting self-feedback.
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Affiliation(s)
- Fumikazu Miwakeichi
- Department of Statistical Modeling, The Institute of Statistical Mathematics, Tokyo 190-8562, Japan
- Statistical Science Program, Graduate Institute for Advanced Studies, SOKENDAI, Tokyo 190-8562, Japan
| | - Andreas Galka
- Clinic for Pediatric and Adolescent Medicine II, University Clinic, University of Kiel, 24105 Kiel, Germany
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Yi C, Yao R, Song L, Jiang L, Si Y, Li P, Li F, Yao D, Zhang Y, Xu P. A Novel Method for Constructing EEG Large-Scale Cortical Dynamical Functional Network Connectivity (dFNC): WTCS. IEEE TRANSACTIONS ON CYBERNETICS 2022; 52:12869-12881. [PMID: 34398778 DOI: 10.1109/tcyb.2021.3090770] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
As a kind of biological network, the brain network conduces to understanding the mystery of high-efficiency information processing in the brain, which will provide instructions to develop efficient brain-like neural networks. Large-scale dynamical functional network connectivity (dFNC) provides a more context-sensitive, dynamical, and straightforward sight at a higher network level. Nevertheless, dFNC analysis needs good enough resolution in both temporal and spatial domains, and the construction of dFNC needs to capture the time-varying correlations between two multivariate time series with unmatched spatial dimensions. Effective methods still lack. With well-developed source imaging techniques, electroencephalogram (EEG) has the potential to possess both high temporal and spatial resolutions. Therefore, we proposed to construct the EEG large-scale cortical dFNC based on brain atlas to probe the subtle dynamic activities in the brain and developed a novel method, that is, wavelet coherence-S estimator (WTCS), to assess the dynamic couplings among functional subnetworks with different spatial dimensions. The simulation study demonstrated its robustness and availability of applying to dFNC. The application in real EEG data revealed the appealing "Primary peak" and "P3-like peak" in dFNC network properties and meaningful evolutions in dFNC network topology for P300. Our study brings new insights for probing brain activities at a more dynamical and higher hierarchical level and pushing forward the development of brain-inspired artificial neural networks. The proposed WTCS not only benefits the dFNC studies but also gives a new solution to capture the time-varying couplings between the multivariate time series that is often encountered in signal processing disciplines.
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Lu Z, Wang H, Gu J, Gao F. Association between abnormal brain oscillations and cognitive performance in patients with bipolar disorder; Molecular mechanisms and clinical evidence. Synapse 2022; 76:e22247. [PMID: 35849784 DOI: 10.1002/syn.22247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 05/23/2022] [Accepted: 06/20/2022] [Indexed: 11/10/2022]
Abstract
Brain oscillations have gained great attention in neuroscience during recent decades as functional building blocks of cognitive-sensory processes. Research has shown that oscillations in "alpha," "beta," "gamma," "delta," and "theta" frequency windows are highly modified in brain pathology, including in patients with cognitive impairment like bipolar disorder (BD). The study of changes in brain oscillations can provide fundamental knowledge for exploring neurophysiological biomarkers in cognitive impairment. The present article reviews findings from the role and molecular basis of abnormal neural oscillation and synchronization in the symptoms of patients with BD. An overview of the results clearly demonstrates that, in cognitive-sensory processes, resting and evoked/event-related electroencephalogram (EEG) spectra in the delta, theta, alpha, beta, and gamma bands are abnormally changed in patients with BD showing psychotic features. Abnormal oscillations have been found to be associated with several neural dysfunctions and abnormalities contributing to BD, including abnormal GABAergic neurotransmission signaling, hippocampal cell discharge, abnormal hippocampal neurogenesis, impaired cadherin and synaptic contact-based cell adhesion processes, extended lateral ventricles, decreased prefrontal cortical gray matter, and decreased hippocampal volume. Mechanistically, impairment in calcium voltage-gated channel subunit alpha1 I, neurotrophic tyrosine receptor kinase proteins, genes involved in brain neurogenesis and synaptogenesis like WNT3 and ACTG2, genes involved in the cell adhesion process like CDH12 and DISC1, and gamma-aminobutyric acid (GABA) signaling have been reported as the main molecular contributors to the abnormalities in resting-state low-frequency oscillations in BD patients. Findings also showed the association of impaired synaptic connections and disrupted membrane potential with abnormal beta/gamma oscillatory activity in patients with BD. Of note, the synaptic GABA neurotransmitter has been found to be a fundamental requirement for the occurrence of long-distance synchronous gamma oscillations necessary for coordinating the activity of neural networks between various brain regions. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Zhou Lu
- Department of Neurosurgery, The Affiliated People's Hospital of NingBo University, NingBo, 315000, China
| | - Huixiao Wang
- Department of Neurosurgery, The Affiliated People's Hospital of NingBo University, NingBo, 315000, China
| | - Jiajie Gu
- Department of Neurosurgery, The Affiliated People's Hospital of NingBo University, NingBo, 315000, China
| | - Feng Gao
- Department of Neurosurgery, The Affiliated People's Hospital of NingBo University, NingBo, 315000, China
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Kourtidou-Papadeli C, Frantzidis CA, Bakirtzis C, Petridou A, Gilou S, Karkala A, Machairas I, Kantouris N, Nday CM, Dermitzakis EV, Bakas E, Mougios V, Bamidis PD, Vernikos J. Therapeutic Benefits of Short-Arm Human Centrifugation in Multiple Sclerosis-A New Approach. Front Neurol 2022; 12:746832. [PMID: 35058870 PMCID: PMC8764123 DOI: 10.3389/fneur.2021.746832] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 12/03/2021] [Indexed: 12/16/2022] Open
Abstract
Short-arm human centrifugation (SAHC) is proposed as a robust countermeasure to treat deconditioning and prevent progressive disability in a case of secondary progressive multiple sclerosis. Based on long-term physiological knowledge derived from space medicine and missions, artificial gravity training seems to be a promising physical rehabilitation approach toward the prevention of musculoskeletal decrement due to confinement and inactivity. So, the present study proposes a novel infrastructure based on SAHC to investigate the hypothesis that artificial gravity ameliorates the degree of disability. The patient was submitted to a 4-week training programme including three weekly sessions of 30 min of intermittent centrifugation at 1.5–2 g. During sessions, cardiovascular, muscle oxygen saturation (SmO2) and electroencephalographic (EEG) responses were monitored, whereas neurological and physical performance tests were carried out before and after the intervention. Cardiovascular parameters improved in a way reminiscent of adaptations to aerobic exercise. SmO2 decreased during sessions concomitant with increased g load, and, as training progressed, SmO2 of the suffering limb dropped, both effects suggesting increased oxygen use, similar to that seen during hard exercise. EEG showed increased slow and decreased fast brain waves, with brain reorganization/plasticity evidenced through functional connectivity alterations. Multiple-sclerosis-related disability and balance capacity also improved. Overall, this study provides novel evidence supporting SAHC as a promising therapeutic strategy in multiple sclerosis, based on mechanical loading, thereby setting the basis for future randomized controlled trials.
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Affiliation(s)
- Chrysoula Kourtidou-Papadeli
- Biomedical Engineering and Aerospace Neuroscience (BEAN), Laboratory of Medical Physics and Digital Innovation, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece.,Greek Aerospace Medical Association and Space Research (GASMA-SR), Thessaloniki, Greece.,Laboratory of Aerospace and Rehabilitation Applications "Joan Vernikos", AROGI Rehabilitation Centre, Thessaloniki, Greece.,Aeromedical Center of Thessaloniki (AeMC), Thessaloniki, Greece
| | - Christos A Frantzidis
- Biomedical Engineering and Aerospace Neuroscience (BEAN), Laboratory of Medical Physics and Digital Innovation, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece.,Greek Aerospace Medical Association and Space Research (GASMA-SR), Thessaloniki, Greece
| | - Christos Bakirtzis
- Department of Neurology, Multiple Sclerosis Center, AHEPA University Hospital, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Anatoli Petridou
- Laboratory of Evaluation of Human Biological Performance, School of Physical Education and Sport Science at Thessaloniki, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Sotiria Gilou
- Biomedical Engineering and Aerospace Neuroscience (BEAN), Laboratory of Medical Physics and Digital Innovation, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Aliki Karkala
- Greek Aerospace Medical Association and Space Research (GASMA-SR), Thessaloniki, Greece
| | - Ilias Machairas
- Biomedical Engineering and Aerospace Neuroscience (BEAN), Laboratory of Medical Physics and Digital Innovation, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Nikolaos Kantouris
- Greek Aerospace Medical Association and Space Research (GASMA-SR), Thessaloniki, Greece
| | - Christiane M Nday
- Biomedical Engineering and Aerospace Neuroscience (BEAN), Laboratory of Medical Physics and Digital Innovation, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | | | - Eleftherios Bakas
- Laboratory of Aerospace and Rehabilitation Applications "Joan Vernikos", AROGI Rehabilitation Centre, Thessaloniki, Greece
| | - Vassilis Mougios
- Laboratory of Evaluation of Human Biological Performance, School of Physical Education and Sport Science at Thessaloniki, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Panagiotis D Bamidis
- Biomedical Engineering and Aerospace Neuroscience (BEAN), Laboratory of Medical Physics and Digital Innovation, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece.,Greek Aerospace Medical Association and Space Research (GASMA-SR), Thessaloniki, Greece
| | - Joan Vernikos
- Greek Aerospace Medical Association and Space Research (GASMA-SR), Thessaloniki, Greece.,Thirdage LLC, Culpeper, VA, United States
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Yi C, Chen C, Jiang L, Tao Q, Li F, Si Y, Zhang T, Yao D, Xu P. Constructing EEG Large-Scale Cortical Functional Network Connectivity Based on Brain Atlas by S Estimator. IEEE Trans Cogn Dev Syst 2021. [DOI: 10.1109/tcds.2020.2991414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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6
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Gupta A, Wolff A, Northoff DG. Extending the "resting state hypothesis of depression" - dynamics and topography of abnormal rest-task modulation. Psychiatry Res Neuroimaging 2021; 317:111367. [PMID: 34555652 DOI: 10.1016/j.pscychresns.2021.111367] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 06/21/2021] [Accepted: 08/18/2021] [Indexed: 10/20/2022]
Abstract
Major depressive disorder (MDD) is characterized by changes in both rest and task states as manifested in temporal dynamics (EEG) and spatial patterns (fMRI). Are rest and task changes related to each other? Extending the "Resting state hypothesis of depression" (RSHD) (Northoff et al., 2011), we, using multimodal imaging, take a tripartite approach: (i) we conduct a review of EEG studies in MDD combining both rest and task states; (ii) we present our own EEG data in MDD on brain dynamics, i.e., intrinsic neural timescales as measured by the autocorrelation window (ACW); and (iii) we review fMRI studies in MDD to probe whether different regions exhibit different rest-task modulation. Review of EEG data shows reduced rest-task change in MDD in different measures of temporal dynamics like peak frequency (and others). Notably, our own EEG data show decreased rest-task change as measured by ACW in frontal electrodes of MDD. The fMRI data reveal that different regions exhibit different rest-task relationships (normal rest-abnormal task, abnormal rest-normal task, abnormal rest-abnormal task) in MDD. Together, we demonstrate altered spatiotemporal dynamics of rest-task modulation in MDD; this further supports and extends the key role of the spontaneous activity in MDD as proposed by the RSHD.
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Affiliation(s)
- Anvita Gupta
- Mind, Brain Imaging and Neuroethics, University of Ottawa Institute of Mental Health Research, Ottawa, Canada; Department of Psychology, Neuroscience and Behaviour, McMaster University, Hamilton, Canada
| | - Annemarie Wolff
- Mind, Brain Imaging and Neuroethics, University of Ottawa Institute of Mental Health Research, Ottawa, Canada
| | - Dr Georg Northoff
- Mind, Brain Imaging and Neuroethics, University of Ottawa Institute of Mental Health Research, Ottawa, Canada; Mental Health Center, 7th hospital, Zhejiang University School of Medicine, 7th hospital, Hangzhou, Zhejiang, China; Centre for Research Ethics & Bioethics, University of Uppsala, Uppsala, Sweden.
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7
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Guo Z, McClelland VM, Simeone O, Mills KR, Cvetkovic Z. Multiscale Wavelet Transfer Entropy with Application to Corticomuscular Coupling Analysis. IEEE Trans Biomed Eng 2021; 69:771-782. [PMID: 34398749 DOI: 10.1109/tbme.2021.3104969] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
OBJECTIVE Functional coupling between the motor cortex and muscle activity is commonly detected and quantified by cortico-muscular coherence (CMC) or Granger causality (GC) analysis, which are applicable only to linear couplings and are not sufficiently sensitive: some healthy subjects show no significant CMC and GC, and yet have good motor skills. The objective of this work is to develop measures of functional cortico-muscular coupling that have improved sensitivity and are capable of detecting both linear and non-linear interactions. METHODS A multiscale wavelet transfer entropy (TE) methodology is proposed. The methodology relies on a dyadic stationary wavelet transform to decompose electroencephalogram (EEG) and electromyogram (EMG) signals into functional bands of neural oscillations. Then, it applies TE analysis based on a range of embedding delay vectors to detect and quantify intra- and cross-frequency band cortico-muscular coupling at different time scales. RESULTS Our experiments with neurophysiological signals substantiate the potential of the developed methodologies for detecting and quantifying information flow between EEG and EMG signals for subjects with and without significant CMC or GC, including non-linear cross-frequency interactions, and interactions across different temporal scales. The obtained results are in agreement with the underlying sensorimotor neurophysiology. CONCLUSION These findings suggest that the concept of multiscale wavelet TE provides a comprehensive framework for analyzing cortex-muscle interactions. SIGNIFICANCE The proposed methodologies will enable developing novel insights into movement control and neurophysiological processes more generally.
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Orkan Olcay B, Özgören M, Karaçalı B. On the characterization of cognitive tasks using activity-specific short-lived synchronization between electroencephalography channels. Neural Netw 2021; 143:452-474. [PMID: 34273721 DOI: 10.1016/j.neunet.2021.06.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 05/04/2021] [Accepted: 06/18/2021] [Indexed: 10/21/2022]
Abstract
Accurate characterization of brain activity during a cognitive task is challenging due to the dynamically changing and the complex nature of the brain. The majority of the proposed approaches assume stationarity in brain activity and disregard the systematic timing organization among brain regions during cognitive tasks. In this study, we propose a novel cognitive activity recognition method that captures the activity-specific timing parameters from training data that elicits maximal average short-lived pairwise synchronization between electroencephalography signals. We evaluated the characterization power of the activity-specific timing parameter triplets in a motor imagery activity recognition framework. The activity-specific timing parameter triplets consist of latency of the maximally synchronized signal segments from activity onset Δt, the time lag between maximally synchronized signal segments τ, and the duration of the maximally synchronized signal segments w. We used cosine-based similarity, wavelet bi-coherence, phase-locking value, phase coherence value, linearized mutual information, and cross-correntropy to calculate the channel synchronizations at the specific timing parameters. Recognition performances as well as statistical analyses on both BCI Competition-III dataset IVa and PhysioNet Motor Movement/Imagery dataset, indicate that the inter-channel short-lived synchronization calculated using activity-specific timing parameter triplets elicit significantly distinct synchronization profiles for different motor imagery tasks and can thus reliably be used for cognitive task recognition purposes.
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Affiliation(s)
- B Orkan Olcay
- Department of Electrical and Electronics Engineering, Izmir Institute of Technology, 35430, Urla, Izmir, Turkey.
| | - Murat Özgören
- Department of Biophysics, Faculty of Medicine, Near East University, 99138, Nicosia, Cyprus.
| | - Bilge Karaçalı
- Department of Electrical and Electronics Engineering, Izmir Institute of Technology, 35430, Urla, Izmir, Turkey.
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9
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Jing W, Xia Y, Li M, Cui Y, Chen M, Xue M, Guo D, Biswal BB, Yao D. State-independent and state-dependent patterns in the rat default mode network. Neuroimage 2021; 237:118148. [PMID: 33984491 DOI: 10.1016/j.neuroimage.2021.118148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 04/04/2021] [Accepted: 05/04/2021] [Indexed: 10/21/2022] Open
Abstract
Resting-state studies have typically assumed constant functional connectivity (FC) between brain regions, and these parameters of interest provide meaningful descriptions of the functional organization of the brain. A number of studies have recently provided evidence pointing to dynamic FC fluctuations in the resting brain, especially in higher-order regions such as the default mode network (DMN). The neural activities underlying dynamic FC remain poorly understood. Here, we recorded electrophysiological signals from DMN regions in freely behaving rats. The dynamic FCs between signals within the DMN were estimated by the phase locking value (PLV) method with sliding time windows across vigilance states [quiet wakefulness (QW) and slow-wave and rapid eye movement sleep (SWS and REMS)]. Factor analysis was then performed to reveal the hidden patterns within the DMN. We identified distinct spatial FC patterns according to the similarities between their temporal dynamics. Interestingly, some of these patterns were vigilance state-dependent, while others were independent across states. The temporal contributions of these patterns fluctuated over time, and their interactive relationships were different across vigilance states. These spatial patterns with dynamic temporal contributions and combinations may offer a flexible framework for efficiently integrating information to support cognition and behavior. These findings provide novel insights into the dynamic functional organization of the rat DMN.
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Affiliation(s)
- Wei Jing
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China; Department of Physiology, School of Basic Medicine and Tongji Medical College, Huazhong University of Science and Technology, Wuhan 4030030, China
| | - Yang Xia
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China
| | - Min Li
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China
| | - Yan Cui
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China
| | - Mingming Chen
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China; School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China
| | - Miaomiao Xue
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China
| | - Daqing Guo
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China
| | - Bharat B Biswal
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China; Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ 07103, United States.
| | - Dezhong Yao
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for NeuroInformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China; Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035 Chengdu, China; School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China.
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Chriskos P, Frantzidis CA, Papanastasiou E, Bamidis PD. Applications of Convolutional Neural Networks in neurodegeneration and physiological aging. Int J Psychophysiol 2020; 159:1-10. [PMID: 33202245 DOI: 10.1016/j.ijpsycho.2020.08.015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 07/29/2020] [Accepted: 08/25/2020] [Indexed: 12/19/2022]
Abstract
The process of aging is linked with significant changes in a human's physiological organization and structure. This is more evident in the case of the brain whose functions generally vary between young and old individuals. Detecting such patterns can be of significant importance especially during the Mild Cognitive Impairment (MCI) stage which is a transition state before the clinical onset of dementia. Intervening in that stage may delay or eventually prevent dementia onset. In this paper we propose a new methodology based in electroencephalographic (EEG) recordings, aiming to classify individuals into healthy, pathological (patients diagnosed with MCI or Mild Dementia) and young, old groups (healthy individuals over and under 50 years of age) through functional connectivity and macro-architecture features. These features are calculated on the estimated brain region activations through the inverse problem solution, enabling us to transform the sensor level EEG recordings through an appropriate transformation matrix. Afterwards, Synchronization Likelihood and Relative Wavelet Entropy values were calculated along with the graph metrics corresponding to the functional connectivity values, as well as the relative energy contributions of five EEG bands (delta, theta, alpha, beta and gamma). These features were organized in Red, Green, Blue (RGB) image-like data structures. Therefore, it was possible to classify each individual into one of the two groups per experiment employing Convolutional Neural Networks. From the maximum classification accuracy achieved on the test set, 90.48% for the pathological aging group and 91.19% for the physiological aging, it is evident that the proposed approach is capable of providing adequate health and age group classification.
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Affiliation(s)
- Panteleimon Chriskos
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Christos A Frantzidis
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
| | - Emmanouil Papanastasiou
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Panagiotis D Bamidis
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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11
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Zhang Y, Lai D, Han J, Wang X, Lin Q, Zhao X, Hu Z. Testing nonlinearity in topological organization of functional brain networks. Eur J Neurosci 2020; 52:4185-4197. [PMID: 32588503 DOI: 10.1111/ejn.14882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 06/13/2020] [Accepted: 06/15/2020] [Indexed: 10/24/2022]
Abstract
Aiming to provide an argumentation on the underlying nonlinearity of the overall functional brain network via surrogate data method and graph theory. Taking the functional magnetic resonance imaging data as original data set and then shuffled the time series of each region of interest to generate surrogate data sets, corresponding original network and its 400 surrogates were obtained via computing connectivity matrixes. The results show that both the global correlation level and corresponding small-world topological characters exhibited obvious differences between the original network and its surrogates. And the following statistical testing results demonstrate their significant distinction, and this topological difference has been proved to be caused by the intrinsic nonlinear dynamics. Accordingly, the nonlinearity of the original functional network and its superior dynamical complexity have been confirmed. The results of this study could provide a novel angle into exploring the underlying mechanism of the neural brain system and offer an essential evidence in explaining complex brain activities.
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Affiliation(s)
- Yan Zhang
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, China
| | - Dingyao Lai
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, China
| | - Jiahui Han
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, China
| | - Xuewei Wang
- Center for Optics and Optoelectronics Research, College of Science, Zhejiang University of Technology, Hangzhou, China
| | - Qiang Lin
- Center for Optics and Optoelectronics Research, College of Science, Zhejiang University of Technology, Hangzhou, China
| | - Xiaohu Zhao
- Department of Imaging, The Fifth People's Hospital of Shanghai, Fudan University, Shanghai, China
| | - Zhenghui Hu
- Center for Optics and Optoelectronics Research, College of Science, Zhejiang University of Technology, Hangzhou, China
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Chriskos P, Frantzidis CA, Gkivogkli PT, Bamidis PD, Kourtidou-Papadeli C. Automatic Sleep Staging Employing Convolutional Neural Networks and Cortical Connectivity Images. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2020; 31:113-123. [PMID: 30892246 DOI: 10.1109/tnnls.2019.2899781] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Understanding of the neuroscientific sleep mechanisms is associated with mental/cognitive and physical well-being and pathological conditions. A prerequisite for further analysis is the identification of the sleep macroarchitecture through manual sleep staging. Several computer-based approaches have been proposed to extract time and/or frequency-domain features with accuracy ranging from 80% to 95% compared with the golden standard of manual staging. However, their acceptability by the medical community is still suboptimal. Recently, utilizing deep learning methodologies increased the research interest in computer-assisted recognition of sleep stages. Aiming to enhance the arsenal of automatic sleep staging, we propose a novel classification framework based on convolutional neural networks. These receive as input synchronizations features derived from cortical interactions within various electroencephalographic rhythms (delta, theta, alpha, and beta) for specific cortical regions which are critical for the sleep deepening. These functional connectivity metrics are then processed as multidimensional images. We also propose to augment the small portion of sleep onset (N1 stage) through the Synthetic Minority Oversampling Technique in order to deal with the great difference in its duration when compared with the remaining sleep stages. Our results (99.85%) indicate the flexibility of deep learning techniques to learn sleep-related neurophysiological patterns.
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Multifractal and entropy analysis of resting-state electroencephalography reveals spatial organization in local dynamic functional connectivity. Sci Rep 2019; 9:13474. [PMID: 31530857 PMCID: PMC6748940 DOI: 10.1038/s41598-019-49726-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Accepted: 08/24/2019] [Indexed: 12/31/2022] Open
Abstract
Functional connectivity of the brain fluctuates even in resting-state condition. It has been reported recently that fluctuations of global functional network topology and those of individual connections between brain regions expressed multifractal scaling. To expand on these findings, in this study we investigated if multifractality was indeed an inherent property of dynamic functional connectivity (DFC) on the regional level as well. Furthermore, we explored if local DFC showed region-specific differences in its multifractal and entropy-related features. DFC analyses were performed on 62-channel, resting-state electroencephalography recordings of twelve young, healthy subjects. Surrogate data testing verified the true multifractal nature of regional DFC that could be attributed to the presumed nonlinear nature of the underlying processes. Moreover, we found a characteristic spatial distribution of local connectivity dynamics, in that frontal and occipital regions showed stronger long-range correlation and higher degree of multifractality, whereas the highest values of entropy were found over the central and temporal regions. The revealed topology reflected well the underlying resting-state network organization of the brain. The presented results and the proposed analysis framework could improve our understanding on how resting-state brain activity is spatio-temporally organized and may provide potential biomarkers for future clinical research.
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14
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Racz FS, Stylianou O, Mukli P, Eke A. Multifractal Dynamic Functional Connectivity in the Resting-State Brain. Front Physiol 2018; 9:1704. [PMID: 30555345 PMCID: PMC6284038 DOI: 10.3389/fphys.2018.01704] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Accepted: 11/12/2018] [Indexed: 11/23/2022] Open
Abstract
Assessing the functional connectivity (FC) of the brain has proven valuable in enhancing our understanding of brain function. Recent developments in the field demonstrated that FC fluctuates even in the resting state, which has not been taken into account by the widely applied static approaches introduced earlier. In a recent study using functional near-infrared spectroscopy (fNIRS) global dynamic functional connectivity (DFC) has also been found to fluctuate according to scale-free i.e., fractal dynamics evidencing the true multifractal (MF) nature of DFC in the human prefrontal cortex. Expanding on these findings, we performed electroencephalography (EEG) measurements in 14 regions over the whole cortex of 24 healthy, young adult subjects in eyes open (EO) and eyes closed (EC) states. We applied dynamic graph theoretical analysis to capture DFC by computing the pairwise time-dependent synchronization between brain regions and subsequently calculating the following dynamic graph topological measures: Density, Clustering Coefficient, and Efficiency. We characterized the dynamic nature of these global network metrics as well as local individual connections in the networks using focus-based multifractal time series analysis in all traditional EEG frequency bands. Global network topological measures were found fluctuating–albeit at different extent–according to true multifractal nature in all frequency bands. Moreover, the monofractal Hurst exponent was found higher during EC than EO in the alpha and beta bands. Individual connections showed a characteristic topology in their fractal properties, with higher autocorrelation owing to short-distance connections–especially those in the frontal and pre-frontal cortex–while long-distance connections linking the occipital to the frontal and pre-frontal areas expressed lower values. The same topology was found with connection-wise multifractality in all but delta band connections, where the very opposite pattern appeared. This resulted in a positive correlation between global autocorrelation and connection-wise multifractality in the higher frequency bands, while a strong anticorrelation in the delta band. The proposed analytical tools allow for capturing the fine details of functional connectivity dynamics that are evidently present in DFC, with the presented results implying that multifractality is indeed an inherent property of both global and local DFC.
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Affiliation(s)
| | | | - Peter Mukli
- Department of Physiology, Semmelweis University, Budapest, Hungary
| | - Andras Eke
- Department of Physiology, Semmelweis University, Budapest, Hungary
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15
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O'Neill GC, Tewarie P, Vidaurre D, Liuzzi L, Woolrich MW, Brookes MJ. Dynamics of large-scale electrophysiological networks: A technical review. Neuroimage 2018; 180:559-576. [PMID: 28988134 DOI: 10.1016/j.neuroimage.2017.10.003] [Citation(s) in RCA: 110] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Revised: 09/23/2017] [Accepted: 10/02/2017] [Indexed: 12/12/2022] Open
Abstract
For several years it has been argued that neural synchronisation is crucial for cognition. The idea that synchronised temporal patterns between different neural groups carries information above and beyond the isolated activity of these groups has inspired a shift in focus in the field of functional neuroimaging. Specifically, investigation into the activation elicited within certain regions by some stimulus or task has, in part, given way to analysis of patterns of co-activation or functional connectivity between distal regions. Recently, the functional connectivity community has been looking beyond the assumptions of stationarity that earlier work was based on, and has introduced methods to incorporate temporal dynamics into the analysis of connectivity. In particular, non-invasive electrophysiological data (magnetoencephalography/electroencephalography (MEG/EEG)), which provides direct measurement of whole-brain activity and rich temporal information, offers an exceptional window into such (potentially fast) brain dynamics. In this review, we discuss challenges, solutions, and a collection of analysis tools that have been developed in recent years to facilitate the investigation of dynamic functional connectivity using these imaging modalities. Further, we discuss the applications of these approaches in the study of cognition and neuropsychiatric disorders. Finally, we review some existing developments that, by using realistic computational models, pursue a deeper understanding of the underlying causes of non-stationary connectivity.
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Affiliation(s)
- George C O'Neill
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom
| | - Prejaas Tewarie
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom
| | - Diego Vidaurre
- Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, Oxford, United Kingdom
| | - Lucrezia Liuzzi
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom
| | - Mark W Woolrich
- Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, Oxford, United Kingdom
| | - Matthew J Brookes
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom.
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16
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Heitmann S, Breakspear M. Putting the "dynamic" back into dynamic functional connectivity. Netw Neurosci 2018; 2:150-174. [PMID: 30215031 PMCID: PMC6130444 DOI: 10.1162/netn_a_00041] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2017] [Accepted: 12/30/2017] [Indexed: 01/17/2023] Open
Abstract
The study of fluctuations in time-resolved functional connectivity is a topic of substantial current interest. As the term "dynamic functional connectivity" implies, such fluctuations are believed to arise from dynamics in the neuronal systems generating these signals. While considerable activity currently attends to methodological and statistical issues regarding dynamic functional connectivity, less attention has been paid toward its candidate causes. Here, we review candidate scenarios for dynamic (functional) connectivity that arise in dynamical systems with two or more subsystems; generalized synchronization, itinerancy (a form of metastability), and multistability. Each of these scenarios arises under different configurations of local dynamics and intersystem coupling: We show how they generate time series data with nonlinear and/or nonstationary multivariate statistics. The key issue is that time series generated by coupled nonlinear systems contain a richer temporal structure than matched multivariate (linear) stochastic processes. In turn, this temporal structure yields many of the phenomena proposed as important to large-scale communication and computation in the brain, such as phase-amplitude coupling, complexity, and flexibility. The code for simulating these dynamics is available in a freeware software platform, the Brain Dynamics Toolbox.
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17
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Improving the quality of a collective signal in a consumer EEG headset. PLoS One 2018; 13:e0197597. [PMID: 29795611 PMCID: PMC5967739 DOI: 10.1371/journal.pone.0197597] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Accepted: 05/04/2018] [Indexed: 11/19/2022] Open
Abstract
This work focuses on the experimental data analysis of electroencephalography (EEG) data, in which multiple sensors are recording oscillatory voltage time series. The EEG data analyzed in this manuscript has been acquired using a low-cost commercial headset, the Emotiv EPOC+. Our goal is to compare different techniques for the optimal estimation of collective rhythms from EEG data. To this end, a traditional method such as the principal component analysis (PCA) is compared to more recent approaches to extract a collective rhythm from phase-synchronized data. Here, we extend the work by Schwabedal and Kantz (PRL 116, 104101 (2016)) evaluating the performance of the Kosambi-Hilbert torsion (KHT) method to extract a collective rhythm from multivariate oscillatory time series and compare it to results obtained from PCA. The KHT method takes advantage of the singular value decomposition algorithm and accounts for possible phase lags among different time series and allows to focus the analysis on a specific spectral band, optimally amplifying the signal-to-noise ratio of a common rhythm. We evaluate the performance of these methods for two particular sets of data: EEG data recorded with closed eyes and EEG data recorded while observing a screen flickering at 15 Hz. We found an improvement in the signal-to-noise ratio of the collective signal for the KHT over the PCA, particularly when random temporal shifts are added to the channels.
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18
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Chriskos P, Frantzidis CA, Gkivogkli PT, Bamidis PD, Kourtidou-Papadeli C. Achieving Accurate Automatic Sleep Staging on Manually Pre-processed EEG Data Through Synchronization Feature Extraction and Graph Metrics. Front Hum Neurosci 2018; 12:110. [PMID: 29628883 PMCID: PMC5877486 DOI: 10.3389/fnhum.2018.00110] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Accepted: 03/07/2018] [Indexed: 11/13/2022] Open
Abstract
Sleep staging, the process of assigning labels to epochs of sleep, depending on the stage of sleep they belong, is an arduous, time consuming and error prone process as the initial recordings are quite often polluted by noise from different sources. To properly analyze such data and extract clinical knowledge, noise components must be removed or alleviated. In this paper a pre-processing and subsequent sleep staging pipeline for the sleep analysis of electroencephalographic signals is described. Two novel methods of functional connectivity estimation (Synchronization Likelihood/SL and Relative Wavelet Entropy/RWE) are comparatively investigated for automatic sleep staging through manually pre-processed electroencephalographic recordings. A multi-step process that renders signals suitable for further analysis is initially described. Then, two methods that rely on extracting synchronization features from electroencephalographic recordings to achieve computerized sleep staging are proposed, based on bivariate features which provide a functional overview of the brain network, contrary to most proposed methods that rely on extracting univariate time and frequency features. Annotation of sleep epochs is achieved through the presented feature extraction methods by training classifiers, which are in turn able to accurately classify new epochs. Analysis of data from sleep experiments on a randomized, controlled bed-rest study, which was organized by the European Space Agency and was conducted in the "ENVIHAB" facility of the Institute of Aerospace Medicine at the German Aerospace Center (DLR) in Cologne, Germany attains high accuracy rates, over 90% based on ground truth that resulted from manual sleep staging by two experienced sleep experts. Therefore, it can be concluded that the above feature extraction methods are suitable for semi-automatic sleep staging.
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Affiliation(s)
- Panteleimon Chriskos
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Christos A. Frantzidis
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
- Greek Aerospace Medical Association and Space Research, Thessaloniki, Greece
| | - Polyxeni T. Gkivogkli
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
- Greek Aerospace Medical Association and Space Research, Thessaloniki, Greece
| | - Panagiotis D. Bamidis
- Laboratory of Medical Physics, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
- Greek Aerospace Medical Association and Space Research, Thessaloniki, Greece
| | - Chrysoula Kourtidou-Papadeli
- Greek Aerospace Medical Association and Space Research, Thessaloniki, Greece
- Director Aeromedical Center of Thessaloniki, Thessaloniki, Greece
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19
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Huang CY, Lin LL, Hwang IS. Age-Related Differences in Reorganization of Functional Connectivity for a Dual Task with Increasing Postural Destabilization. Front Aging Neurosci 2017; 9:96. [PMID: 28446874 PMCID: PMC5388754 DOI: 10.3389/fnagi.2017.00096] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Accepted: 03/28/2017] [Indexed: 11/13/2022] Open
Abstract
The aged brain may not make good use of central resources, so dual task performance may be degraded. From the brain connectome perspective, this study investigated dual task deficits of older adults that lead to task failure of a suprapostural motor task with increasing postural destabilization. Twelve younger (mean age: 25.3 years) and 12 older (mean age: 65.8 years) adults executed a designated force-matching task from a level-surface or a stabilometer board. Force-matching error, stance sway, and event-related potential (ERP) in the preparatory period were measured. The force-matching accuracy and the size of postural sway of the older adults tended to be more vulnerable to stance configuration than that of the young adults, although both groups consistently showed greater attentional investment on the postural task as sway regularity increased in the stabilometer condition. In terms of the synchronization likelihood (SL) of the ERP, both younger and older adults had net increases in the strengths of the functional connectivity in the whole brain and in the fronto-sensorimotor network in the stabilometer condition. Also, the SL in the fronto-sensorimotor network of the older adults was greater than that of the young adults for both stance conditions. However, unlike the young adults, the older adults did not exhibit concurrent deactivation of the functional connectivity of the left temporal-parietal-occipital network for postural-suprapostural task with increasing postural load. In addition, the older adults potentiated functional connectivity of the right prefrontal area to cope with concurrent force-matching with increasing postural load. In conclusion, despite a universal negative effect on brain volume conduction, our preliminary results showed that the older adults were still capable of increasing allocation of neural sources, particularly via compensatory recruitment of the right prefrontal loop, for concurrent force-matching under the challenging postural condition. Nevertheless, dual-task performance of the older adults tended to be more vulnerable to postural load than that of the younger adults, in relation to inferior neural economy or a slow adaptation process to stance destabilization for scant dissociation of control hubs in the temporal-parietal-occipital cortex.
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Affiliation(s)
- Cheng-Ya Huang
- School and Graduate Institute of Physical Therapy, College of Medicine, National Taiwan UniversityTaipei, Taiwan.,Physical Therapy Center, National Taiwan University HospitalTaipei, Taiwan
| | - Linda L Lin
- Institute of Physical Education, Health and Leisure Studies, National Cheng Kung UniversityTainan, Taiwan
| | - Ing-Shiou Hwang
- Institute of Allied Health Sciences, College of Medicine, National Cheng Kung UniversityTainan, Taiwan.,Department of Physical Therapy, College of Medicine, National Cheng Kung UniversityTainan, Taiwan
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20
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Lo PC, Tian WJM, Liu FL. Macrostate and Microstate of EEG Spatio-Temporal Nonlinear Dynamics in Zen Meditation. ACTA ACUST UNITED AC 2017. [DOI: 10.4236/jbbs.2017.713046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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21
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Kozma R. Reflections on a giant of brain science: How lucky we are having Walter J. Freeman as our beacon in cognitive neurodynamics research. Cogn Neurodyn 2016; 10:457-469. [PMID: 27891195 PMCID: PMC5106457 DOI: 10.1007/s11571-016-9403-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Revised: 08/19/2016] [Accepted: 08/19/2016] [Indexed: 10/21/2022] Open
Abstract
Walter J. Freeman was a giant of the field of neuroscience whose visionary work contributed various experimental and theoretical breakthroughs to brain research in the past 60 years. He has pioneered a number of Electroencephalogram and Electrocorticogram tools and approaches that shaped the field, while "Freeman Neurodynamics" is a theoretical concept that is widely known, used, and respected among neuroscientists all over the world. His recent death is a profound loss to neuroscience and biomedical engineering. Many of his revolutionary ideas on brain dynamics have been ahead of their time by decades. We summarize his following groundbreaking achievements: (1) Mass Action in the Nervous System, from microscopic (single cell) recordings, through mesoscopic populations, to large-scale collective brain patterns underlying cognition; (2) Freeman-Kachalsky model of multi-scale, modular brain dynamics; (3) cinematic theory of cognitive dynamics; (4) phase transitions in cortical dynamics modeled with random graphs and quantum field theory; (5) philosophical aspects of intentionality, consciousness, and the unity of brain-mind-body. His work has been admired by many of his neuroscientist colleagues and followers. At the same time, his multidisciplinary approach combining advanced concepts of control theory and the mathematics of nonlinear systems and chaos, poses significant challenges to those who wish to thoroughly understand his message. The goal of this commemorative paper is to review key aspects of Freeman's neurodynamics and to provide some handles to gain better understanding about Freeman's extraordinary intellectual achievement.
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Affiliation(s)
- Robert Kozma
- Department of Mathematics, University of Memphis, Memphis, TN 38152 USA
- Department of Computer Science, University of Massachusetts, Amherst, MA 01003 USA
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22
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Huang CY, Chang GC, Tsai YY, Hwang IS. An Increase in Postural Load Facilitates an Anterior Shift of Processing Resources to Frontal Executive Function in a Postural-Suprapostural Task. Front Hum Neurosci 2016; 10:420. [PMID: 27594830 PMCID: PMC4990564 DOI: 10.3389/fnhum.2016.00420] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Accepted: 08/08/2016] [Indexed: 12/11/2022] Open
Abstract
Increase in postural-demand resources does not necessarily degrade a concurrent motor task, according to the adaptive resource-sharing hypothesis of postural-suprapostural dual-tasking. This study investigated how brain networks are organized to optimize a suprapostural motor task when the postural load increases and shifts postural control into a less automatic process. Fourteen volunteers executed a designated force-matching task from a level surface (a relative automatic process in posture) and from a stabilometer board while maintaining balance at a target angle (a relatively controlled process in posture). Task performance of the postural and suprapostural tasks, synchronization likelihood (SL) of scalp EEG, and graph-theoretical metrics were assessed. Behavioral results showed that the accuracy and reaction time of force-matching from a stabilometer board were not affected, despite a significant increase in postural sway. However, force-matching in the stabilometer condition showed greater local and global efficiencies of the brain networks than force-matching in the level-surface condition. Force-matching from a stabilometer board was also associated with greater frontal cluster coefficients, greater mean SL of the frontal and sensorimotor areas, and smaller mean SL of the parietal-occipital cortex than force-matching from a level surface. The contrast of supra-threshold links in the upper alpha and beta bands between the two stance conditions validated load-induced facilitation of inter-regional connections between the frontal and sensorimotor areas, but that contrast also indicated connection suppression between the right frontal-temporal and the parietal-occipital areas for the stabilometer stance condition. In conclusion, an increase in stance difficulty alters the neurocognitive processes in executing a postural-suprapostural task. Suprapostural performance is not degraded by increase in postural load, due to (1) increased effectiveness of information transfer, (2) an anterior shift of processing resources toward frontal executive function, and (3) cortical dissociation of control hubs in the parietal-occipital cortex for neural economy.
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Affiliation(s)
- Cheng-Ya Huang
- School and Graduate Institute of Physical Therapy, College of Medicine, National Taiwan UniversityTaipei City, Taiwan; Physical Therapy Center, National Taiwan University HospitalTaipei, Taiwan
| | - Gwo-Ching Chang
- Department of Information Engineering, I-Shou University Kaohsiung City, Taiwan
| | - Yi-Ying Tsai
- Institute of Allied Health Sciences, College of Medicine, National Cheng Kung University Tainan City, Taiwan
| | - Ing-Shiou Hwang
- Institute of Allied Health Sciences, College of Medicine, National Cheng Kung UniversityTainan City, Taiwan; Department of Physical Therapy, College of Medicine, National Cheng Kung UniversityTainan City, Taiwan
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23
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Herrera-Díaz A, Mendoza-Quiñones R, Melie-Garcia L, Martínez-Montes E, Sanabria-Diaz G, Romero-Quintana Y, Salazar-Guerra I, Carballoso-Acosta M, Caballero-Moreno A. Functional Connectivity and Quantitative EEG in Women with Alcohol Use Disorders: A Resting-State Study. Brain Topogr 2015; 29:368-81. [PMID: 26660886 DOI: 10.1007/s10548-015-0467-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Accepted: 11/24/2015] [Indexed: 12/13/2022]
Abstract
This study was aimed at exploring the electroencephalographic features associated with alcohol use disorders (AUD) during a resting-state condition, by using quantitative EEG and Functional Connectivity analyses. In addition, we explored whether EEG functional connectivity is associated with trait impulsivity. Absolute and relative powers and Synchronization Likelihood (SL) as a measure of functional connectivity were analyzed in 15 AUD women and fifteen controls matched in age, gender and education. Correlation analysis between self-report impulsivity as measured by the Barratt impulsiveness Scale (BIS-11) and SL values of AUD patients were performed. Our results showed increased absolute and relative beta power in AUD patients compared to matched controls, and reduced functional connectivity in AUD patients predominantly in the beta and alpha bands. Impaired connectivity was distributed at fronto-central and occipito-parietal regions in the alpha band, and over the entire scalp in the beta band. We also found that impaired functional connectivity particularly in alpha band at fronto-central areas was negative correlated with non-planning dimension of impulsivity. These findings suggest that functional brain abnormalities are present in AUD patients and a disruption of resting-state EEG functional connectivity is associated with psychopathological traits of addictive behavior.
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Affiliation(s)
| | | | - Lester Melie-Garcia
- LREN, Department of Clinical Neurosciences, Lausanne University Hospital (CHUV), Lausanne, Switzerland
| | - Eduardo Martínez-Montes
- Department of Neuroinformatics, Cuban Neuroscience Center, Havana, Cuba.,Politecnico di Torino, Turin, Italy
| | - Gretel Sanabria-Diaz
- LREN, Department of Clinical Neurosciences, Lausanne University Hospital (CHUV), Lausanne, Switzerland
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24
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Stam CJ. Chaos, Continuous EEG, and Cognitive Mechanisms: a Future for Clinical Neurophysiology. ACTA ACUST UNITED AC 2015. [DOI: 10.1080/1086508x.2003.11079444] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Cornelis Jan Stam
- Department of Clinical Neurophysiology and MEG Center VU University Medical Center, P.O. Box 7057 1007 MB Amsterdam, The Netherlands
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25
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The minimum spanning tree: An unbiased method for brain network analysis. Neuroimage 2015; 104:177-88. [DOI: 10.1016/j.neuroimage.2014.10.015] [Citation(s) in RCA: 230] [Impact Index Per Article: 25.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Revised: 10/03/2014] [Accepted: 10/06/2014] [Indexed: 01/08/2023] Open
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26
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An Efficient Implementation of the Synchronization Likelihood Algorithm for Functional Connectivity. Neuroinformatics 2014; 13:245-58. [DOI: 10.1007/s12021-014-9251-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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27
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Khalid A, Kim BS, Chung MK, Ye JC, Jeon D. Tracing the evolution of multi-scale functional networks in a mouse model of depression using persistent brain network homology. Neuroimage 2014; 101:351-63. [PMID: 25064667 DOI: 10.1016/j.neuroimage.2014.07.040] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Revised: 07/10/2014] [Accepted: 07/17/2014] [Indexed: 01/24/2023] Open
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28
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Hassan M, Dufor O, Merlet I, Berrou C, Wendling F. EEG source connectivity analysis: from dense array recordings to brain networks. PLoS One 2014; 9:e105041. [PMID: 25115932 PMCID: PMC4130623 DOI: 10.1371/journal.pone.0105041] [Citation(s) in RCA: 112] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2014] [Accepted: 07/08/2014] [Indexed: 11/18/2022] Open
Abstract
The recent past years have seen a noticeable increase of interest for electroencephalography (EEG) to analyze functional connectivity through brain sources reconstructed from scalp signals. Although considerable advances have been done both on the recording and analysis of EEG signals, a number of methodological questions are still open regarding the optimal way to process the data in order to identify brain networks. In this paper, we analyze the impact of three factors that intervene in this processing: i) the number of scalp electrodes, ii) the combination between the algorithm used to solve the EEG inverse problem and the algorithm used to measure the functional connectivity and iii) the frequency bands retained to estimate the functional connectivity among neocortical sources. Using High-Resolution (hr) EEG recordings in healthy volunteers, we evaluated these factors on evoked responses during picture recognition and naming task. The main reason for selection this task is that a solid literature background is available about involved brain networks (ground truth). From this a priori information, we propose a performance criterion based on the number of connections identified in the regions of interest (ROI) that belong to potentially activated networks. Our results show that the three studied factors have a dramatic impact on the final result (the identified network in the source space) as strong discrepancies were evidenced depending on the methods used. They also suggest that the combination of weighted Minimum Norm Estimator (wMNE) and the Phase Synchronization (PS) methods applied on High-Resolution EEG in beta/gamma bands provides the best performance in term of topological distance between the identified network and the expected network in the above-mentioned cognitive task.
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Affiliation(s)
- Mahmoud Hassan
- INSERM, U642, Rennes, France
- Université de Rennes 1, LTSI, Rennes, France
- * E-mail:
| | - Olivier Dufor
- Télécom Bretagne, Institut Mines-Télécom, UMR CNRS Lab-STICC, Brest, France
| | - Isabelle Merlet
- INSERM, U642, Rennes, France
- Université de Rennes 1, LTSI, Rennes, France
| | - Claude Berrou
- Télécom Bretagne, Institut Mines-Télécom, UMR CNRS Lab-STICC, Brest, France
| | - Fabrice Wendling
- INSERM, U642, Rennes, France
- Université de Rennes 1, LTSI, Rennes, France
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29
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Quraan MA, Protzner AB, Daskalakis ZJ, Giacobbe P, Tang CW, Kennedy SH, Lozano AM, McAndrews MP. EEG power asymmetry and functional connectivity as a marker of treatment effectiveness in DBS surgery for depression. Neuropsychopharmacology 2014; 39:1270-81. [PMID: 24285211 PMCID: PMC3957123 DOI: 10.1038/npp.2013.330] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Revised: 10/30/2013] [Accepted: 10/31/2013] [Indexed: 01/10/2023]
Abstract
Recently, deep brain stimulation (DBS) has been evaluated as an experimental therapy for treatment-resistant depression. Although there have been encouraging results in open-label trials, about half of the patients fail to achieve meaningful benefit. Although progress has been made in understanding the neurobiology of MDD, the ability to characterize differences in brain dynamics between those who do and do not benefit from DBS is lacking. In this study, we investigated EEG resting-state data recorded from 12 patients that have undergone DBS surgery. Of those, six patients were classified as responders to DBS, defined as an improvement of 50% or more on the 17-item Hamilton Rating Scale for Depression (HAMD-17). We compared hemispheric frontal theta and parietal alpha power asymmetry and synchronization asymmetry between responders and non-responders. Hemispheric power asymmetry showed statistically significant differences between responders and non-responders with healthy controls showing an asymmetry similar to responders but opposite to non-responders. This asymmetry was characterized by an increase in frontal theta in the right hemisphere relative to the left combined with an increase in parietal alpha in the left hemisphere relative to the right in non-responders compared with responders. Hemispheric mean synchronization asymmetry showed a statistically significant difference between responders and non-responders in the theta band, with healthy controls showing an asymmetry similar to responders but opposite to non-responders. This asymmetry resulted from an increase in frontal synchronization in the right hemisphere relative to the left combined with an increase in parietal synchronization in the left hemisphere relative to the right in non-responders compared with responders. Connectivity diagrams revealed long-range differences in frontal/central-parietal connectivity between the two groups in the theta band. This pattern was observed irrespective of whether EEG data were collected with active DBS or with the DBS stimulation turned off, suggesting stable functional and possibly structural modifications that may be attributed to plasticity.
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Affiliation(s)
- Maher A Quraan
- Krembil Neuroscience Center, University Health Network, Toronto, ON, Canada,Toronto Western Research Institute, University Health Network, Toronto, ON, Canada,Krembil Neuroscience Centre, University Health Network, 399 Bathurst St., Room 4F-409, Toronto, Ontario M5T 2S8, Canada, Tel: +1 416 603 5800, E-mail:
| | - Andrea B Protzner
- Department of Psychology, University of Calgary, Calgary, AB, Canada,Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada
| | - Zafiris J Daskalakis
- Department of Psychiatry, University of Toronto, Toronto, ON, Canada,Institute of Medical Sciences, University of Toronto, Toronto, ON, Canada,Centre for Addiction and Mental Health, Toronto, ON, Canada
| | - Peter Giacobbe
- Department of Psychiatry, University of Toronto, Toronto, ON, Canada,Department of Psychiatry, University Health Network, Toronto, ON, Canada
| | - Chris W Tang
- Department of Psychiatry, University Health Network, Toronto, ON, Canada
| | - Sidney H Kennedy
- Department of Psychiatry, University of Toronto, Toronto, ON, Canada,Institute of Medical Sciences, University of Toronto, Toronto, ON, Canada,Department of Psychiatry, University Health Network, Toronto, ON, Canada
| | - Andres M Lozano
- Krembil Neuroscience Center, University Health Network, Toronto, ON, Canada,Toronto Western Research Institute, University Health Network, Toronto, ON, Canada,Department of Surgery, University of Toronto, Toronto, ON, Canada
| | - Mary P McAndrews
- Krembil Neuroscience Center, University Health Network, Toronto, ON, Canada,Toronto Western Research Institute, University Health Network, Toronto, ON, Canada,Institute of Medical Sciences, University of Toronto, Toronto, ON, Canada,Department of Psychology, University of Toronto, Toronto, ON, Canada
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A Recurrent Increase of Synchronization in the EEG Continues from Waking throughout NREM and REM Sleep. ISRN NEUROSCIENCE 2014; 2014:756952. [PMID: 24967318 PMCID: PMC4045569 DOI: 10.1155/2014/756952] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Accepted: 12/19/2013] [Indexed: 11/18/2022]
Abstract
Pointwise transinformation (PTI) provides a quantitative nonlinear approach to spatiotemporal synchronization patterns of the rhythms of coupled cortical oscillators. We applied PTI to the waking and sleep EEGs of 21 healthy sleepers; we calculated the mean levels and distances of synchronized episodes and estimated the dominant frequency shift from unsynchronized to synchronized EEG segments by spectral analysis. Recurrent EEG synchronization appeared and ceased abruptly in the anterior, central, and temporal derivations; in the posterior derivations it appeared more fluctuating. This temporal dynamics of synchronization remained stable throughout all states of vigilance, while the dominant frequencies of synchronized phases changed markedly. Mean synchronization had high frontal and occipital levels and low central and midtemporal levels. Thus, a fundamental coupling pattern with recurrent increases of synchronization in the EEG (“RISE”) seems to exist during the brain's resting state. The generators of RISE could be coupled corticocortical neuronal assemblies which might be modulated by subcortical structures. RISE designates the recurrence of transiently synchronized cortical microstates that are independent of specific EEG waves, the spectral content of the EEG, and especially the current state of vigilance. Therefore, it might be suited for EEG analysis in clinical situations without stable vigilance.
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Vyšata O, Schätz M, Kopal J, Burian J, Procházka A, Jiří K, Hort J, Vališ M. Non-Linear EEG Measures in Meditation. ACTA ACUST UNITED AC 2014. [DOI: 10.4236/jbise.2014.79072] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Spatially Nonlinear Interdependence of Alpha-Oscillatory Neural Networks under Chan Meditation. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2013; 2013:360371. [PMID: 24489583 PMCID: PMC3877605 DOI: 10.1155/2013/360371] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2013] [Revised: 10/12/2013] [Accepted: 11/13/2013] [Indexed: 11/29/2022]
Abstract
This paper reports the results of our investigation of the effects of Chan meditation on brain electrophysiological behaviors from the viewpoint of spatially nonlinear interdependence among regional neural networks. Particular emphasis is laid on the alpha-dominated EEG (electroencephalograph). Continuous-time wavelet transform was adopted to detect the epochs containing substantial alpha activities. Nonlinear interdependence quantified by similarity index S(X∣Y), the influence of source signal Y on sink signal X, was applied to the nonlinear dynamical model in phase space reconstructed from multichannel EEG. Experimental group involved ten experienced Chan-Meditation practitioners, while control group included ten healthy subjects within the same age range, yet, without any meditation experience. Nonlinear interdependence among various cortical regions was explored for five local neural-network regions, frontal, posterior, right-temporal, left-temporal, and central regions. In the experimental group, the inter-regional interaction was evaluated for the brain dynamics under three different stages, at rest (stage R, pre-meditation background recording), in Chan meditation (stage M), and the unique Chakra-focusing practice (stage C). Experimental group exhibits stronger interactions among various local neural networks at stages M and C compared with those at stage R. The intergroup comparison demonstrates that Chan-meditation brain possesses better cortical inter-regional interactions than the resting brain of control group.
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Tarapore PE, Findlay AM, Lahue SC, Lee H, Honma SM, Mizuiri D, Luks TL, Manley GT, Nagarajan SS, Mukherjee P. Resting state magnetoencephalography functional connectivity in traumatic brain injury. J Neurosurg 2013; 118:1306-16. [PMID: 23600939 DOI: 10.3171/2013.3.jns12398] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
OBJECT Traumatic brain injury (TBI) is one of the leading causes of morbidity worldwide. One mechanism by which blunt head trauma may disrupt normal cognition and behavior is through alteration of functional connectivity between brain regions. In this pilot study, the authors applied a rapid automated resting state magnetoencephalography (MEG) imaging technique suitable for routine clinical use to test the hypothesis that there is decreased functional connectivity in patients with TBI compared with matched controls, even in cases of mild TBI. Furthermore, they posit that these abnormal reductions in MEG functional connectivity can be detected even in TBI patients without specific evidence of traumatic lesions on 3-T MR images. Finally, they hypothesize that the reductions of functional connectivity can improve over time across serial MEG scans during recovery from TBI. METHODS Magnetoencephalography maps of functional connectivity in the alpha (8- to 12-Hz) band from 21 patients who sustained a TBI were compared with those from 18 age- and sex-matched controls. Regions of altered functional connectivity in each patient were detected in automated fashion through atlas-based registration to the control database. The extent of reduced functional connectivity in the patient group was tested for correlations with clinical characteristics of the injury as well as with findings on 3-T MRI. Finally, the authors compared initial connectivity maps with 2-year follow-up functional connectivity in a subgroup of 5 patients with TBI. RESULTS Fourteen male and 7 female patients (17-53 years old, median 29 years) were enrolled. By Glasgow Coma Scale (GCS) criteria, 11 patients had mild, 1 had moderate, and 3 had severe TBI, and 6 had no GCS score recorded. On 3-T MRI, 16 patients had abnormal findings attributable to the trauma and 5 had findings in the normal range. As a group, the patients with TBI had significantly lower functional connectivity than controls (p < 0.01). Three of the 5 patients with normal findings on 3-T MRI showed regions of abnormally reduced MEG functional connectivity. No significant correlations were seen between extent of functional disconnection and injury severity or posttraumatic symptoms (p > 0.05). In the subgroup undergoing 2-year follow-up, the second MEG scan demonstrated a significantly lower percentage of voxels with decreased connectivity (p < 0.05) than the initial MEG scan. CONCLUSIONS A rapid automated resting-state MEG imaging technique demonstrates abnormally decreased functional connectivity that may persist for years after TBI, including cases classified as "mild" by GCS criteria. Disrupted MEG connectivity can be detected even in some patients with normal findings on 3-T MRI. Analysis of follow-up MEG scans in a subgroup of patients shows that, over time, the abnormally reduced connectivity can improve, suggesting neuroplasticity during the recovery from TBI. Resting state MEG deserves further investigation as a prognostic and predictive biomarker for TBI.
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Affiliation(s)
- Phiroz E Tarapore
- Department of Neurological Surgery, University of California, San Francisco, California 94107-0946, USA
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Kim DJ, Bolbecker AR, Howell J, Rass O, Sporns O, Hetrick WP, Breier A, O'Donnell BF. Disturbed resting state EEG synchronization in bipolar disorder: A graph-theoretic analysis. NEUROIMAGE-CLINICAL 2013; 2:414-23. [PMID: 24179795 PMCID: PMC3777715 DOI: 10.1016/j.nicl.2013.03.007] [Citation(s) in RCA: 95] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2013] [Revised: 03/11/2013] [Accepted: 03/13/2013] [Indexed: 01/24/2023]
Abstract
Disruption of functional connectivity may be a key feature of bipolar disorder (BD) which reflects disturbances of synchronization and oscillations within brain networks. We investigated whether the resting electroencephalogram (EEG) in patients with BD showed altered synchronization or network properties. Resting-state EEG was recorded in 57 BD type-I patients and 87 healthy control subjects. Functional connectivity between pairs of EEG channels was measured using synchronization likelihood (SL) for 5 frequency bands (δ, θ, α, β, and γ). Graph-theoretic analysis was applied to SL over the electrode array to assess network properties. BD patients showed a decrease of mean synchronization in the alpha band, and the decreases were greatest in fronto-central and centro-parietal connections. In addition, the clustering coefficient and global efficiency were decreased in BD patients, whereas the characteristic path length increased. We also found that the normalized characteristic path length and small-worldness were significantly correlated with depression scores in BD patients. These results suggest that BD patients show impaired neural synchronization at rest and a disruption of resting-state functional connectivity. Global synchronization of BD patients was reduced in the alpha-band at resting. De-synchronized connectivity was localized in fronto-centro-parietal connections. Global topology of BD had decreased network clustering and increased path length. BD showed the less efficient network processing. Network characteristics of BD patients were associated with depression severity.
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Key Words
- BD, bipolar disorder
- Bipolar disorder
- C, clustering coefficients
- DSM-IV, diagnostic and statistical manual of mental disorders, the 4th-edition
- DTI, diffusion tensor imaging (image)
- EEG, electroencephalogram
- EOG, electrooculogram
- Eg, global efficiency
- El, local efficiency
- Electroencephalogram
- FA, fractional anisotropy
- FDR, false discovery rate
- Functional connectivity
- GABA, gamma-amino butyric acid
- Graph theory
- L, characteristic path length
- MADRS, Montgomery–Asberg Depression Rating Scale
- MEG, magnetoencephalogram
- MRI, magnetic resonance imaging
- NBS, network-based statistics
- NC, normal healthy control
- PLI, phase lag index
- Resting state
- SCID, Structured Clinical Interview for DSM Disorders
- SL, synchronization likelihood
- Synchronization likelihood
- WASI, Wechsler Abbreviated Scale of Intelligence
- WM, white matter
- YMRS, Young Mania Rating Scale
- b, node betweenness centrality
- fMRI, functional magnetic resonance imaging
- s, node strength
- γ, normalized clustering coefficients
- λ, normalized characteristic path length
- σ, small-worldness
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Affiliation(s)
- Dae-Jin Kim
- Department of Psychological and Brain Sciences, Indiana University, 1101 East 10th Street, Bloomington, IN 47405, USA
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35
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On the Quantization of Time-Varying Phase Synchrony Patterns into Distinct Functional Connectivity Microstates (FCμstates) in a Multi-trial Visual ERP Paradigm. Brain Topogr 2013; 26:397-409. [DOI: 10.1007/s10548-013-0276-z] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2012] [Accepted: 02/08/2013] [Indexed: 11/26/2022]
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You Y, Bai L, Dai R, Zhong C, Xue T, Wang H, Liu Z, Wei W, Tian J. Acupuncture induces divergent alterations of functional connectivity within conventional frequency bands: evidence from MEG recordings. PLoS One 2012; 7:e49250. [PMID: 23152881 PMCID: PMC3494681 DOI: 10.1371/journal.pone.0049250] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2012] [Accepted: 10/05/2012] [Indexed: 11/19/2022] Open
Abstract
As an ancient Chinese healing modality which has gained increasing popularity in modern society, acupuncture involves stimulation with fine needles inserted into acupoints. Both traditional literature and clinical data indicated that modulation effects largely depend on specific designated acupoints. However, scientific representations of acupoint specificity remain controversial. In the present study, considering the new findings on the sustained effects of acupuncture and its time-varied temporal characteristics, we employed an electrophysiological imaging modality namely magnetoencephalography with a temporal resolution on the order of milliseconds. Taken into account the differential band-limited signal modulations induced by acupuncture, we sought to explore whether or not stimulation at Stomach Meridian 36 (ST36) and a nearby non-meridian point (NAP) would evoke divergent functional connectivity alterations within delta, theta, alpha, beta and gamma bands. Whole-head scanning was performed on 28 healthy participants during an eyes-closed no-task condition both preceding and following acupuncture. Data analysis involved calculation of band-limited power (BLP) followed by pair-wise BLP correlations. Further averaging was conducted to obtain local and remote connectivity. Statistical analyses revealed the increased connection degree of the left temporal cortex within delta (0.5-4 Hz), beta (13-30 Hz) and gamma (30-48 Hz) bands following verum acupuncture. Moreover, we not only validated the closer linkage of the left temporal cortex with the prefrontal and frontal cortices, but further pinpointed that such patterns were more extensively distributed in the ST36 group in the delta and beta bands compared to the restriction only to the delta band for NAP. Psychophysical results for significant pain threshold elevation further confirmed the analgesic effect of acupuncture at ST36. In conclusion, our findings may provide a new perspective to lend support for the specificity of neural expression underlying acupuncture.
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Affiliation(s)
- Youbo You
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Lijun Bai
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Ruwei Dai
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Chongguang Zhong
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Ting Xue
- Life Science Research Center, School of Electronic Engineering, Xidian University, Xi'an, Shaanxi, China
| | - Hu Wang
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Zhenyu Liu
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Wenjuan Wei
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
| | - Jie Tian
- Intelligent Medical Research Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China
- Life Science Research Center, School of Electronic Engineering, Xidian University, Xi'an, Shaanxi, China
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del Río D, Cuesta P, Bajo R, García-Pacios J, López-Higes R, del-Pozo F, Maestú F. Efficiency at rest: Magnetoencephalographic resting-state connectivity and individual differences in verbal working memory. Int J Psychophysiol 2012; 86:160-7. [DOI: 10.1016/j.ijpsycho.2012.08.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2011] [Revised: 08/08/2012] [Accepted: 08/23/2012] [Indexed: 11/30/2022]
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Sweeney-Reed CM, Riddell PM, Ellis JA, Freeman JE, Nasuto SJ. Neural correlates of true and false memory in mild cognitive impairment. PLoS One 2012; 7:e48357. [PMID: 23118992 PMCID: PMC3485202 DOI: 10.1371/journal.pone.0048357] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2012] [Accepted: 09/24/2012] [Indexed: 12/04/2022] Open
Abstract
The goal of this research was to investigate the changes in neural processing in mild cognitive impairment. We measured phase synchrony, amplitudes, and event-related potentials in veridical and false memory to determine whether these differed in participants with mild cognitive impairment compared with typical, age-matched controls. Empirical mode decomposition phase locking analysis was used to assess synchrony, which is the first time this analysis technique has been applied in a complex cognitive task such as memory processing. The technique allowed assessment of changes in frontal and parietal cortex connectivity over time during a memory task, without a priori selection of frequency ranges, which has been shown previously to influence synchrony detection. Phase synchrony differed significantly in its timing and degree between participant groups in the theta and alpha frequency ranges. Timing differences suggested greater dependence on gist memory in the presence of mild cognitive impairment. The group with mild cognitive impairment had significantly more frontal theta phase locking than the controls in the absence of a significant behavioural difference in the task, providing new evidence for compensatory processing in the former group. Both groups showed greater frontal phase locking during false than true memory, suggesting increased searching when no actual memory trace was found. Significant inter-group differences in frontal alpha phase locking provided support for a role for lower and upper alpha oscillations in memory processing. Finally, fronto-parietal interaction was significantly reduced in the group with mild cognitive impairment, supporting the notion that mild cognitive impairment could represent an early stage in Alzheimer's disease, which has been described as a 'disconnection syndrome'.
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Affiliation(s)
- Catherine M Sweeney-Reed
- Memory and Consciousness Research Group, University Clinic for Neurology and Stereotactic Neurosurgery, Medical Faculty, Otto von Guericke University, Magdeburg, Germany.
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Wilmer A, de Lussanet M, Lappe M. Time-delayed mutual information of the phase as a measure of functional connectivity. PLoS One 2012; 7:e44633. [PMID: 23028571 PMCID: PMC3445535 DOI: 10.1371/journal.pone.0044633] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2012] [Accepted: 08/06/2012] [Indexed: 11/19/2022] Open
Abstract
We propose a time-delayed mutual information of the phase for detecting nonlinear synchronization in electrophysiological data such as MEG. Palus already introduced the mutual information as a measure of synchronization. To obtain estimates on small data-sets as reliably as possible, we adopt the numerical implementation as proposed by Kraskov and colleagues. An embedding with a parametric time-delay allows a reconstruction of arbitrary nonstationary connective structures--so-called connectivity patterns--in a wide class of systems such as coupled oscillatory or even purely stochastic driven processes. By using this method we do not need to make any assumptions about coupling directions, delay times, temporal dynamics, nonlinearities or underlying mechanisms. For verifying and refining the methods we generate synthetic data-sets by a mutual amplitude coupled network of Rössler oscillators with an a-priori known connective structure. This network is modified in such a way, that the power-spectrum forms a 1/f power law, which is also observed in electrophysiological recordings. The functional connectivity measure is tested on robustness to additive uncorrelated noise and in discrimination of linear mixed input data. For the latter issue a suitable de-correlation technique is applied. Furthermore, the compatibility to inverse methods for a source reconstruction in MEG such as beamforming techniques is controlled by dedicated dipole simulations. Finally, the method is applied on an experimental MEG recording.
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Affiliation(s)
- Andreas Wilmer
- Department of Psychology, Otto-Creutzfeldt Center for Cognitive and Behavioral Neuroscience (OCC), Westfälische Wilhelms-Universität, Münster, Germany.
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A signal-processing-based approach to time-varying graph analysis for dynamic brain network identification. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2012; 2012:451516. [PMID: 22934122 PMCID: PMC3427740 DOI: 10.1155/2012/451516] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2012] [Revised: 07/03/2012] [Accepted: 07/10/2012] [Indexed: 01/21/2023]
Abstract
In recent years, there has been a growing need to
analyze the functional connectivity of the human brain. Previous
studies have focused on extracting static or time-independent
functional networks to describe the long-term behavior of brain
activity. However, a static network is generally not sufficient to
represent the long term communication patterns of the brain and
is considered as an unreliable snapshot of functional connectivity.
In this paper, we propose a dynamic network summarization
approach to describe the time-varying evolution of connectivity
patterns in functional brain activity. The proposed approach
is based on first identifying key event intervals by quantifying
the change in the connectivity patterns across time and then
summarizing the activity in each event interval by extracting the
most informative network using principal component decomposition.
The proposed method is evaluated for characterizing time-varying
network dynamics from event-related potential (ERP)
data indexing the error-related negativity (ERN) component related
to cognitive control. The statistically significant connectivity
patterns for each interval are presented to illustrate the dynamic
nature of functional connectivity.
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Polanía R, Paulus W, Nitsche MA. Noninvasively Decoding the Contents of Visual Working Memory in the Human Prefrontal Cortex within High-gamma Oscillatory Patterns. J Cogn Neurosci 2012; 24:304-14. [DOI: 10.1162/jocn_a_00151] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Abstract
The temporal maintenance and subsequent retrieval of information that no longer exists in the environment is called working memory. It is believed that this type of memory is controlled by the persistent activity of neuronal populations, including the prefrontal, temporal, and parietal cortex. For a long time, it has been controversially discussed whether, in working memory, the PFC stores past sensory events or, instead, its activation is an extramnemonic source of top–down control over posterior regions. Recent animal studies suggest that specific information about the contents of working memory can be decoded from population activity in prefrontal areas. However, it has not been shown whether the contents of working memory during the delay periods can be decoded from EEG recordings in the human brain. We show that by analyzing the nonlinear dynamics of EEG oscillatory patterns it is possible to noninvasively decode with high accuracy, during encoding and maintenance periods, the contents of visual working memory information within high-gamma oscillations in the human PFC. These results are thus in favor of an active storage function of the human PFC in working memory; this, without ruling out the role of PFC in top–down processes. The ability to noninvasively decode the contents of working memory is promising in applications such as brain computer interfaces, together with computation of value function during planning and decision making processes.
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Ho MC, Huang CF, Chou CY, Lin YT, Shih CS, Wu MT, Hung CM, Liu CJ. Task-related brain oscillations in normal aging. Health (London) 2012. [DOI: 10.4236/health.2012.429118] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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KOZMA ROBERT, PULJIC MARKO, PERLOVSKY LEONID. MODELING GOAL-ORIENTED DECISION MAKING THROUGH COGNITIVE PHASE TRANSITIONS. ACTA ACUST UNITED AC 2011. [DOI: 10.1142/s1793005709001246] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Cognitive experiments indicate the presence of discontinuities in brain dynamics during high-level cognitive processing. Non-linear dynamic theory of brains pioneered by Freeman explains the experimental findings through the theory of metastability and edge-of-criticality in cognitive systems, which are key properties associated with robust operation and fast and reliable decision making. Recently, neuropercolation has been proposed to model such critical behavior. Neuropercolation is a family of probabilistic models based on the mathematical theory of bootstrap percolations on lattices and random graphs and motivated by structural and dynamical properties of neural populations in the cortex. Neuropercolation exhibits phase transitions and it provides a novel mathematical tool for studying spatio-temporal dynamics of multi-stable systems. The present work reviews the theory of cognitive phase transitions based on neuropercolation models and outlines the implications to decision making in brains and in artificial designs.
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Affiliation(s)
- ROBERT KOZMA
- Computational NeuroDynamics Laboratory, FedEx Institute of Technology, 373 Dunn Hall, University of Memphis, Memphis, TN 38152, USA
| | - MARKO PULJIC
- Computational NeuroDynamics Laboratory, FedEx Institute of Technology, 373 Dunn Hall, University of Memphis, Memphis, TN 38152, USA
| | - LEONID PERLOVSKY
- US Air Force Research Laboratory, Sensors Directorate, 80 Scott Drive, Hanscom AFB, MA 01731, USA
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44
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Localization of cortico-peripheral coherence with electroencephalography. Neuroimage 2011; 57:1348-57. [DOI: 10.1016/j.neuroimage.2011.05.076] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2011] [Revised: 05/04/2011] [Accepted: 05/27/2011] [Indexed: 11/21/2022] Open
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45
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Martino J, Honma SM, Findlay AM, Guggisberg AG, Owen JP, Kirsch HE, Berger MS, Nagarajan SS. Resting functional connectivity in patients with brain tumors in eloquent areas. Ann Neurol 2011; 69:521-32. [PMID: 21400562 DOI: 10.1002/ana.22167] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2010] [Revised: 06/23/2010] [Accepted: 07/16/2010] [Indexed: 11/08/2022]
Abstract
OBJECTIVE Resection of brain tumors adjacent to eloquent areas represents a challenge in neurosurgery. If maximal resection is desired without inducing postoperative neurological deficits, a detailed knowledge of the functional topography in and around the tumor is crucial. The aim of the present work is to evaluate the value of preoperative magnetoencephalography (MEG) imaging of functional connectivity to predict the results of intraoperative electrical stimulation (IES) mapping, the clinical gold standard for neurosurgical localization of functional areas. METHODS Resting-state whole-cortex MEG recordings were obtained from 57 consecutive subjects with focal brain tumors near or within motor, sensory, or language areas. Neural activity was estimated using adaptive spatial filtering algorithms, and the mean imaginary coherence between the rest of the brain and voxels in and around brain tumors were compared to the mean imaginary coherence between the rest of the brain and contralesional voxels as an index of functional connectivity. IES mapping was performed in all subjects. The cortical connectivity pattern near the tumor was compared to the IES results. RESULTS Maps with decreased resting-state functional connectivity in the entire tumor area had a negative predictive value of 100% for absence of eloquent cortex during IES. Maps showing increased resting-state functional connectivity within the tumor area had a positive predictive value of 64% for finding language, motor, or sensory cortical sites during IES mapping. INTERPRETATION Preoperative resting state MEG connectivity analysis is a useful noninvasive tool to evaluate the functionality of the tissue surrounding tumors within eloquent areas, and could potentially contribute to surgical planning and patient counseling.
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Affiliation(s)
- Juan Martino
- Department of Neurological Surgery, Hospital Universitario Marqués de Valdecilla, Instituto de Formación e Investigación Marqués de Valdecilla, Santander, Cantabria, Spain
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Wendling F, Chauvel P, Biraben A, Bartolomei F. From intracerebral EEG signals to brain connectivity: identification of epileptogenic networks in partial epilepsy. Front Syst Neurosci 2010; 4:154. [PMID: 21152345 PMCID: PMC2998039 DOI: 10.3389/fnsys.2010.00154] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2010] [Accepted: 11/03/2010] [Indexed: 11/13/2022] Open
Abstract
Epilepsy is a complex neurological disorder characterized by recurring seizures. In 30% of patients, seizures are insufficiently reduced by anti-epileptic drugs. In the case where seizures originate from a relatively circumscribed region of the brain, epilepsy is said to be partial and surgery can be indicated. The success of epilepsy surgery depends on the accurate localization and delineation of the epileptogenic zone (which often involves several structures), responsible for seizures. It requires a comprehensive pre-surgical evaluation of patients that includes not only imaging data but also long-term monitoring of electrophysiological signals (scalp and intracerebral EEG). During the past decades, considerable effort has been devoted to the development of signal analysis techniques aimed at characterizing the functional connectivity among spatially distributed regions over interictal (outside seizures) or ictal (during seizures) periods from EEG data. Most of these methods rely on the measurement of statistical couplings among signals recorded from distinct brain sites. However, methods differ with respect to underlying theoretical principles (mostly coming from the field of statistics or the field of non-linear physics). The objectives of this paper are: (i) to provide an brief overview of methods aimed at characterizing functional brain connectivity from electrophysiological data, (ii) to provide concrete application examples in the context of drug-refractory partial epilepsies, and iii) to highlight some key points emerging from results obtained both on real intracerebral EEG signals and on signals simulated from physiologically plausible models in which the underlying connectivity patterns are known a priori (ground truth).
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The relationship between structural and functional connectivity: Graph theoretical analysis of an EEG neural mass model. Neuroimage 2010; 52:985-94. [DOI: 10.1016/j.neuroimage.2009.10.049] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2008] [Revised: 10/14/2009] [Accepted: 10/15/2009] [Indexed: 12/17/2022] Open
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Ruiz Y, Pockett S, Freeman WJ, Gonzalez E, Li G. A method to study global spatial patterns related to sensory perception in scalp EEG. J Neurosci Methods 2010; 191:110-8. [DOI: 10.1016/j.jneumeth.2010.05.021] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2010] [Accepted: 05/27/2010] [Indexed: 10/19/2022]
Affiliation(s)
- Yusely Ruiz
- Center for Studies on Electronic and Information Technologies, Universidad Central Marta Abreu de Las Villas, Santa Clara, VC, CP 54830, Cuba.
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van den Heuvel MP, Hulshoff Pol HE. Specific somatotopic organization of functional connections of the primary motor network during resting state. Hum Brain Mapp 2010; 31:631-44. [PMID: 19830684 DOI: 10.1002/hbm.20893] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Regions of the primary motor network are known to show a high level of spontaneous functional connectivity during rest. Resting-state functional magnetic resonance imaging (fMRI) studies have reported the left and right motor cortex to form a single resting-state network, without examining the specific organization of the functional connections between subregions of the primary motor network. The primary motor cortex has a somatotopic organization, clearly separating regions that control our feet from regions that control our fingers and other body parts. In this study, 3 T resting-state fMRI time-series of 46 healthy subjects were acquired; and for all subregions along the precentral gyrus, the location of the maximum level of functional connectivity within the contralateral primary motor cortex was computed, together with whole brain functional connectivity maps, to examine a possible somatotopic organization of the functional connections of the motor network. Subregions of the primary motor cortex were found to be most strongly functionally linked to regions in the contralateral hemisphere with a similar spatial location along the contralateral primary motor cortex as the selected seed regions. On the basis of the knowledge of a somatopic organization of the primary motor network, these findings suggest that functional subregions of the motor network are one-on-one linked to their functional homolog in the contralateral hemisphere and organized in a somatotopic fashion. Examining the specific organization of the functional connections within the primary motor network could enhance our overall understanding of the organization of resting-state functional communication within the brain.
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Affiliation(s)
- Martijn P van den Heuvel
- Rudolf Magnus Institute of Neuroscience, University Medical Center Utrecht, Heidelberglaan 100, Utrecht, The Netherlands.
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Chavez M, Valencia M, Navarro V, Latora V, Martinerie J. Functional modularity of background activities in normal and epileptic brain networks. PHYSICAL REVIEW LETTERS 2010; 104:118701. [PMID: 20366507 DOI: 10.1103/physrevlett.104.118701] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2008] [Indexed: 05/29/2023]
Abstract
We analyze the connectivity structure of weighted brain networks extracted from spontaneous magnetoencephalographic signals of healthy subjects and epileptic patients (suffering from absence seizures) recorded at rest. We find that, for the activities in the 5-14 Hz range, healthy brains exhibit a sparse connectivity, whereas the brain networks of patients display a rich connectivity with a clear modular structure. Our results suggest that modularity plays a key role in the functional organization of brain areas during normal and pathological neural activities at rest.
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Affiliation(s)
- M Chavez
- CNRS UMR-7225, Hôpital de la Salpêtrière, 47 Boulevard de l'Hôpital, 75013 Paris, France
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