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Ebenryter-Olbinska K, Karolak-Wojciechowska J, Sochacka E. Efficient synthesis of 2'-deoxyzebularine and its α-anomer by the silyl method of N-glycosylation. Crystal structures and conformational study in solution. Carbohydr Res 2014; 392:7-15. [PMID: 24814656 DOI: 10.1016/j.carres.2014.03.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2014] [Revised: 03/17/2014] [Accepted: 03/18/2014] [Indexed: 10/25/2022]
Abstract
2'-Deoxyzebularine and its α-anomer have been efficiently synthesized with relatively high stereoselectivity by a modified procedure of the silyl method of the N-glycosidic bond formation. An SnCl4-catalyzed condensation of silylated pyrimidin-2-one with 1-α-chloro-3,5-di-O-p-toluoyl-2-deoxy-d-ribofuranose under kinetic control condition (-33°C, 1,2-dichloroethane) led to the mixture of β- and α-anomeric nucleosides in 3:1 ratio. Analogous condensation at +35°C (thermodynamic control conditions) provided mainly p-toluoyl protected α-2'-deoxyzebularine (α:β=4:1), easily separated by crystallization from the anomeric mixture. The structures of both 2'-deoxyzebularine anomers were confirmed by X-ray analysis of the crystals and conformational studies in solution performed using an NMR method.
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Affiliation(s)
| | - Janina Karolak-Wojciechowska
- Institute of General and Ecological Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland
| | - Elzbieta Sochacka
- Institute of Organic Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
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2
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Sahabuddin S, Ghosh R, Achari B, Mandal SB. Nucleoside synthesis from 3-alkylated sugars: role of 3beta-oxy substituents in directing nucleoside formation. Org Biomol Chem 2006; 4:551-7. [PMID: 16446814 DOI: 10.1039/b514028e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using Vorbrüggen's protocol, reaction of persilylated uracil with xylofuranose derivatives having 3beta-oxy-3alpha-alkyl substitution produced both alpha- and beta-nucleosides. Only the beta-nucleosides were formed from substrates having the reverse stereochemistry at C-3 or lacking the 3-alkyl substituent. Participation of the 3beta-oxy substituent in stabilizing the incipient C-1 carbonium ion (or oxonium ion) intermediate has been suggested from analysis of energy-minimized conformations.
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Affiliation(s)
- Sk Sahabuddin
- Department of Medicinal Chemistry, Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Kolkata, 700 032, India.
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3
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De Bernardini S, Graf G, Leach CA, Bühlmayer P, Waldmeier F, Tamm C. Nucleosides and Nucleotides. Part 21. Synthesis of a Tridecanucleoside Dodecaphosphate Incorporating the Unnatural Base 2 (1H)-Pyridone. Helv Chim Acta 2004. [DOI: 10.1002/hlca.19830660226] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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4
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Cerletti N, Séquin U, Tamm C, Zürcher W. Nucleosides and Nucleotides. Part 13. Synthesis and spectral properties of 1- (3′-O-Phosphoryl-2′-deoxy-β -D-ribofuranosyl)-2(1H)-pyridone-(3′-5′)-1-(2′-deoxy-β-D-ribofuranosyl)-2 (1H)-pyridone. Helv Chim Acta 2004. [DOI: 10.1002/hlca.19780610729] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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5
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Bühlmayer P, Graf G, Waldmeier F, Tamm C. Nucleoside und Nucleotide. Teil 14. Synthese des Octanucleosidheptaphosphats d(G-A-T-T-T-T-G-A). Helv Chim Acta 2004. [DOI: 10.1002/hlca.19800630841] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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6
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Zhong JH, Fishman A, Lee-Ruff E. Photochemistry on soluble polymer supports: synthesis of nucleosides. Org Lett 2002; 4:4415-7. [PMID: 12465901 DOI: 10.1021/ol026881r] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
[reaction: see text] A new soluble polymer support synthesis of nucleosides is described. The photochemical ring expansion of cyclobutanones in the presence of poly(ethylene glycol) (PEG) results in polymer-supported ribosides. These photoadducts can be cleaved from the polymer under Vorbrüggen coupling conditions with TMS-protected purines and pyrimidines to give ribonucleosides. The method has been extended to include modified PEGs with dendritic end-groups in order to improve the loading levels for these coupling reactions.
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Affiliation(s)
- Jian-Hua Zhong
- Department of Chemistry, York University, 4700 Keele Street, Toronto, Ontario M3J 1P3, Canada
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7
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Lee-Ruff E, Margau R. Photochemical synthesis of novel dideoxynucleosides. NUCLEOSIDES, NUCLEOTIDES & NUCLEIC ACIDS 2001; 20:185-96. [PMID: 11393396 DOI: 10.1081/ncn-100002080] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
A series of 2',3'-dideoxynucleosides based on the apiose family was prepared from photochemical ring-expansion of a common cyclobutanone precursor. The starting ketone, (+/-) 3-[2'-(benzoyloxy)ethyl]-2,2-dimethylcyclobutanone (12) was prepared from commercially available (+/-)alpha-pinene. Since the optically pure antipodes of alpha-pinene are also commercially available, these nucleosides can be prepared optically pure using the identical procedure.
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Affiliation(s)
- E Lee-Ruff
- Department of Chemistry, York University, Toronto, Ontario, Canada
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8
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Noe CR, Buchstaller HP, Haberhauer G, Holzner A. Darstellung von 2?,3?-Dideoxy-2?-hydroxymethyl-nucleosiden. MONATSHEFTE FUR CHEMIE 1997. [DOI: 10.1007/bf00806859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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9
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Lee-Ruff E, Ostrowski M, Ladha A, Stynes DV, Vernik I, Jiang JL, Wan WQ, Ding SF, Joshi S. Synthesis and HIV inhibition activity of 2',3'-dideoxy-3'-C-hydroxymethyl nucleosides. J Med Chem 1996; 39:5276-80. [PMID: 8978856 DOI: 10.1021/jm950822k] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
A series if 2',3'-dideoxy-3'-C-hydroxymethyl purine nucleosides were prepared based on the photochemical ring expansion of a chiral cyclobutanone precursor, (2S)-trans-2,3-bis[(benzoyloxy)methyl]cyclobutanone, in the presence of a 6-substituted purine. Both alpha- and beta-anomers are produced in this transformation. Deprotection was effected by reaction of the photoadducts with saturated methanolic ammonia. Nine purine nucleosides were tested for their inhibitory effect of HIV IIIB virus on H9 cells. The 6-hexyloxy and adenine derivatives 4e,c, respectively, appeared to be most effective at inhibiting viral reproduction with 4c comparable in activity to ddI and AZT.
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Affiliation(s)
- E Lee-Ruff
- Department of Chemistry, York University, Toronto, Ontario, Canada
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10
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Diekmann E, Friedrich K, Fritz HG. Didesoxy-Ribonucleoside durch Schmelzkondensation. ACTA ACUST UNITED AC 1993. [DOI: 10.1002/prac.19933350504] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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11
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Ghosh MK, Cohen JS. Oligodeoxynucleotides as antisense inhibitors of gene expression. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1992; 42:79-126. [PMID: 1574591 DOI: 10.1016/s0079-6603(08)60574-7] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- M K Ghosh
- Pharmacology Department, Georgetown University Medical School, Washington, D.C. 20007
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12
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Morvan F, Rayner B, Imbach JL. α-Oligodeoxynucleotides (α-DNA): A New Chimeric Nucleic Acid Analog. GENETIC ENGINEERING 1990; 12:37-52. [PMID: 1369999 DOI: 10.1007/978-1-4613-0641-2_3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/25/2023]
Affiliation(s)
- F Morvan
- UA 488 CNRS, Université des Sciences et Techniques du Languedoc, Montpellier, France
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13
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14
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Seela F, Bindig U. Glycosylations of Ambident Anions of 2(1H)- and 4(1H)-Pyridone and Stereoselective Synthesis of 2(1H)-PyrimidinoneN-(2′-Deoxy-α-D-ribofuranoside). ACTA ACUST UNITED AC 1989. [DOI: 10.1002/jlac.198919890241] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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15
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Miwa T, Narasaka K, Mukaiyama T. A NEW METHOD FOR THE STEREOSELECTIVE SYNTHESIS OF NUCLEOSIDES FROM ACYCLIC EPOXY ALDEHYDES. CHEM LETT 1984. [DOI: 10.1246/cl.1984.1093] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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16
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Konno K, Hayano K, Shirahama H, Saito H, Matsumoto T. Clitidine, a new toxic pyridine nucleoside from clitocybe acromelalga. Tetrahedron 1982. [DOI: 10.1016/0040-4020(82)80107-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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17
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Kohler P, Wachtl M, Tamm C. Nucleoside und Nucleotide. Teil 15. Synthese von Desoxyribonucleosid-monophosphaten und -triphosphaten mit 2(1H)-Pyrimidinon, 2(1H)-Pyridinon und 4-Amino-2(1H)-pyridinon als Basen. Helv Chim Acta 1980. [DOI: 10.1002/hlca.19800630842] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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18
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Volz E, Tamm C. Nucleoside und Nucleotide, Teil 12. Synthese von Dinucleosidmonophosphaten mit 1-(2?-Desoxy-?-D-ribofuranosyl)-2(1H)-pyrimidon als Baustein. Helv Chim Acta 1978. [DOI: 10.1002/hlca.19780610728] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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19
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Waldmeier F, Tamm C. Nucleoside und Nucleotide. Teil 11. Phosphorylierung von 1-(2?-Desoxy-?-D-ribofuranosyl)-2(1H)-pyridon und dessen Verhalten bei der Synthese von Dinucleotiden. Helv Chim Acta 1978. [DOI: 10.1002/hlca.19780610513] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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20
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Cerletti N, Tamm C. Nucleoside und Nucleotide. Teil 10. Synthese von Thymidylyl-(3?-5?) -thymidylyl-(3?-5?)-1-(2?-desoxy-?-D-ribofuranosyl)-2(1H)-pyridon. Helv Chim Acta 1977. [DOI: 10.1002/hlca.19770600406] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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21
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Gregor I, Séquin U, Tamm C. [Nucleosides and nucleotides. Part 8. Synthesis of dinucleotides with thymidine and 1-(deoxy-beta-D-ribofuranosyl)-2(1H)-pyridone as building blocks]. Helv Chim Acta 1975; 58:712-38. [PMID: 1158733 DOI: 10.1002/hlca.19750580309] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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22
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23
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Séquin U. Nucleosides and nucleotides. Part 7. Four dithymidine monophosphates with different anomeric configurations, their synthesis and behaviour towards phosphodiesterases. Helv Chim Acta 1974; 57:68-81. [PMID: 4377267 DOI: 10.1002/hlca.19740570108] [Citation(s) in RCA: 34] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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24
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Séquin U. Nucleosides and nucleotides. 5. The stereochemistry of oligonucleotides consisting of 2'-deoxy-alpha-D-ribosides, a study with Drieding stereomodels. EXPERIENTIA 1973; 29:1059-62. [PMID: 4744843 DOI: 10.1007/bf01946717] [Citation(s) in RCA: 38] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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25
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Glaser R, Séquin U, Tamm C. [Nucleosides and nucleotides. Solid-phase synthesis of oligonucleotides on an insoluble, macroporous carrier]. Helv Chim Acta 1973; 56:654-70. [PMID: 4753797 DOI: 10.1002/hlca.19730560212] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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26
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27
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Falk W, Tamm C. [Nucleosides and nucleotides. 3. Polycondensation of thymidine-3'-phosphate by the triester method]. Helv Chim Acta 1972; 55:1928-47. [PMID: 5077583 DOI: 10.1002/hlca.19720550611] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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