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Adeyemi OO, Ndodo ND, Sulaiman MK, Ayansola OT, Buhari OIN, Akanbi OA, Bolarinwa OA, Chukwu C, Joel IY, Omoare AA, Wahab KW, Obiekea C, Buhari MO, Ahumibe A, Kolawole CF, Okoi C, Omotesho OB, Mba N, Adeniyi O, Babatunde O, Akintunde N, Ayinla G, Akande OW, Odunola RA, Saka MJ, Musa OI, Durotoye IA, Ihekweazu C, Adetifa IM, Fadeyi A. SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. PLoS One 2023; 18:e0280756. [PMID: 36696405 PMCID: PMC9876355 DOI: 10.1371/journal.pone.0280756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 01/06/2023] [Indexed: 01/26/2023] Open
Abstract
The COVID-19 global pandemic is being driven by evolving SARS-CoV-2 variants with consequential implications on virus transmissibility, host immunity, and disease severity. Continuous molecular and genomic surveillance of the SARS-CoV-2 variants is therefore necessary for public health interventions toward the management of the pandemic. This study is a retrospective analysis of COVID-19 cases reported in a Nigerian tertiary institution from July to December 2021. In total, 705 suspected COVID-19 cases that comprised 547 students and 158 non-students were investigated by real time PCR (RT-PCR); of which 372 (~52.8%) tested positive for COVID-19. Using a set of selection criteria, 74 (~19.9%) COVID-19 positive samples were selected for next generation sequencing. Data showed that there were two outbreaks of COVID-19 within the university community over the study period, during which more females (56.8%) tested positive than males (47.8%) (p<0.05). Clinical data together with phylogenetic analysis suggested community transmission of SARS-CoV-2 through mostly asymptomatic and/or pre-symptomatic individuals. Confirmed COVID-19 cases were mostly mild, however, SARS-CoV-2 delta (77%) and omicron (4.1%) variants were implicated as major drivers of respective waves of infections during the study period. This study highlights the importance of integrated surveillance of communicable disease during outbreaks.
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Affiliation(s)
- Oluwapelumi Olufemi Adeyemi
- Department of Medical Microbiology and Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
- Molecular Diagnostic and Research Laboratory, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | | | - Mariam Kehinde Sulaiman
- Department of Medical Microbiology and Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
- Molecular Diagnostic and Research Laboratory, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | | | - Oluwabunmi Idera Nimat Buhari
- Department of Behavioural Sciences, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | | | - Oladimeji Akeem Bolarinwa
- Department of Epidemiology and Community Health, Faculty of Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | - Chimaobi Chukwu
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
| | - Ireoluwa Yinka Joel
- Molecular Diagnostic and Research Laboratory, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | | | - Kolawole Wasiu Wahab
- Department of Medicine, Faculty of Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | - Celestina Obiekea
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
| | - Mikhail Olayinka Buhari
- Department of Pathology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | - Anthony Ahumibe
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
| | | | - Catherine Okoi
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
| | | | - Nwando Mba
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
| | | | - Olajumoke Babatunde
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
| | | | - Ganiu Ayinla
- Health Services, University of Ilorin, Ilorin, Nigeria
| | | | | | - Mohammed Jimoh Saka
- Department of Epidemiology and Community Health, Faculty of Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | - Omotosho Ibrahim Musa
- Department of Epidemiology and Community Health, Faculty of Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | - Idayat Adenike Durotoye
- Department of Haematology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
| | - Chikwe Ihekweazu
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
- Office of the Director General, Nigeria Centre for Disease Control, Abuja, Nigeria
| | - Ifedayo Morayo Adetifa
- National Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria
- Office of the Director General, Nigeria Centre for Disease Control, Abuja, Nigeria
| | - Abayomi Fadeyi
- Department of Medical Microbiology and Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
- Molecular Diagnostic and Research Laboratory, College of Health Sciences, University of Ilorin, Ilorin, Nigeria
- * E-mail:
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Durotoye I, Odunola R, Adeyemi O, Akanmu A, Bolarinwa O, Adeboye M, Abdullahi A, Bolajoko Z, Durosinmi W, Adebisi G, Aduloju V. Pertinent roles of African higher institutions in the COVID-19 pandemic response: The University of Ilorin, Ilorin, Nigeria; An African Model. Int J Health Plann Manage 2020; 35:1257-1259. [PMID: 32452084 PMCID: PMC7280693 DOI: 10.1002/hpm.2984] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 04/29/2020] [Indexed: 01/24/2023] Open
Affiliation(s)
- Idayat Durotoye
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Haematology, University of Ilorin, Ilorin, Nigeria
| | - Rasheed Odunola
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Health Services, University of Ilorin, Ilorin, Nigeria
| | - Oluwapelumi Adeyemi
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Medical Microbiology and Parasitology, University of Ilorin, Ilorin, Nigeria
| | - Alex Akanmu
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Science Education, University of Ilorin, Ilorin, Nigeria
| | - Oladimeji Bolarinwa
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Epidemiology and Community Health, University of Ilorin, Ilorin, Nigeria
| | - Muhammed Adeboye
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Paediatrics, University of Ilorin, Ilorin, Nigeria
| | - Ali Abdullahi
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Sociology, University of Ilorin, Ilorin, Nigeria
| | - Zulkarnain Bolajoko
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Works, University of Ilorin, Ilorin, Nigeria
| | - Wasiu Durosinmi
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria.,Department of Estate Management, University of Ilorin, Ilorin, Nigeria
| | - George Adebisi
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria
| | - Veronica Aduloju
- The COVID-19 Prevention Committee, Office of The Vice Chancellor, University of Ilorin, Ilorin, Nigeria
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