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Smitienko O, Feldman T, Shelaev I, Gostev F, Aybush A, Cherepanov D, Nadtochenko V, Ostrovsky M. Reversible Photochromic Reactions of Bacteriorhodopsin from Halobacterium salinarum at Femto- and Picosecond Times. Molecules 2024; 29:4847. [PMID: 39459214 PMCID: PMC11510181 DOI: 10.3390/molecules29204847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Revised: 10/11/2024] [Accepted: 10/11/2024] [Indexed: 10/28/2024] Open
Abstract
The operation of bacteriorhodopsin (BR) from the archaeon Halobacterium salinarum is based on the photochromic reaction of isomerization of the chromophore group (the retinal protonated Schiff base, RPSB) from the all-trans to the 13-cis form. The ultrafast dynamics of the reverse 13-cis → all-trans photoreaction was studied using femtosecond transient absorption spectroscopy in comparison with the forward photoreaction. The forward photoreaction was initiated by photoexcitation of BR by pulse I (540 nm). The reverse photoreaction was initiated by photoexcitation of the product K590 at an early stage of its formation (5 ps) by pulse II (660 nm). The conversion of the excited K590 to the ground state proceeds at times of 0.19, 1.1, and 16 ps with the relative contributions of ~20/60/20, respectively. All these decay channels lead to the formation of the initial state of BR as a product with a quantum yield of ~1. This state is preceded by vibrationally excited intermediates, the relaxation of which occurs in the 16 ps time range. Likely, the heterogeneity of the excited state of K590 is determined by the heterogeneity of its chromophore center. The forward photoreaction includes two components-0.52 and 3.5 ps, with the relative contributions of 91/9, respectively. The reverse photoreaction initiated from K590 proceeds more efficiently in the conical intersection (CI) region but on the whole at a lower rate compared to the forward photoreaction, due to significant heterogeneity of the potential energy surface.
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Affiliation(s)
- Olga Smitienko
- Emanuel Institute of Biochemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119334, Russia; (T.F.); (M.O.)
| | - Tatyana Feldman
- Emanuel Institute of Biochemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119334, Russia; (T.F.); (M.O.)
- Department of Biology, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow 119991, Russia;
| | - Ivan Shelaev
- Moscow Center for Advanced Studies, Kulakova Str. 20, Moscow 123592, Russia; (I.S.); (F.G.)
- N.N. Semenov Federal Research Center for Chemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119991, Russia
| | - Fedor Gostev
- Moscow Center for Advanced Studies, Kulakova Str. 20, Moscow 123592, Russia; (I.S.); (F.G.)
- N.N. Semenov Federal Research Center for Chemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119991, Russia
| | - Arseniy Aybush
- Moscow Center for Advanced Studies, Kulakova Str. 20, Moscow 123592, Russia; (I.S.); (F.G.)
- N.N. Semenov Federal Research Center for Chemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119991, Russia
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow 119991, Russia
| | - Dmitry Cherepanov
- Department of Biology, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow 119991, Russia;
- Moscow Center for Advanced Studies, Kulakova Str. 20, Moscow 123592, Russia; (I.S.); (F.G.)
- N.N. Semenov Federal Research Center for Chemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119991, Russia
| | - Victor Nadtochenko
- Moscow Center for Advanced Studies, Kulakova Str. 20, Moscow 123592, Russia; (I.S.); (F.G.)
- N.N. Semenov Federal Research Center for Chemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119991, Russia
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow 119991, Russia
| | - Mikhail Ostrovsky
- Emanuel Institute of Biochemical Physics of the Russian Academy of Sciences, Kosygin St., 4, Moscow 119334, Russia; (T.F.); (M.O.)
- Department of Biology, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow 119991, Russia;
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2
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Ostrovsky MA, Smitienko OA, Bochenkova AV, Feldman TB. Similarities and Differences in Photochemistry of Type I and Type II Rhodopsins. BIOCHEMISTRY. BIOKHIMIIA 2023; 88:1528-1543. [PMID: 38105022 DOI: 10.1134/s0006297923100097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Revised: 07/20/2023] [Accepted: 08/12/2023] [Indexed: 12/19/2023]
Abstract
The diversity of the retinal-containing proteins (rhodopsins) in nature is extremely large. Fundamental similarity of the structure and photochemical properties unites them into one family. However, there is still a debate about the origin of retinal-containing proteins: divergent or convergent evolution? In this review, based on the results of our own and literature data, a comparative analysis of the similarities and differences in the photoconversion of the rhodopsin of types I and II is carried out. The results of experimental studies of the forward and reverse photoreactions of the bacteriorhodopsin (type I) and visual rhodopsin (type II) rhodopsins in the femto- and picosecond time scale, photo-reversible reaction of the octopus rhodopsin (type II), photovoltaic reactions, as well as quantum chemical calculations of the forward photoreactions of bacteriorhodopsin and visual rhodopsin are presented. The issue of probable convergent evolution of type I and type II rhodopsins is discussed.
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Affiliation(s)
- Mikhail A Ostrovsky
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
- Emanuel Institute of Biochemical Physics, Moscow, 119334, Russia
| | - Olga A Smitienko
- Emanuel Institute of Biochemical Physics, Moscow, 119334, Russia
| | | | - Tatiana B Feldman
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia.
- Emanuel Institute of Biochemical Physics, Moscow, 119334, Russia
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3
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Smitienko OA, Feldman TB, Petrovskaya LE, Nekrasova OV, Yakovleva MA, Shelaev IV, Gostev FE, Cherepanov DA, Kolchugina IB, Dolgikh DA, Nadtochenko VA, Kirpichnikov MP, Ostrovsky MA. Comparative Femtosecond Spectroscopy of Primary Photoreactions of Exiguobacterium sibiricum Rhodopsin and Halobacterium salinarum Bacteriorhodopsin. J Phys Chem B 2021; 125:995-1008. [PMID: 33475375 DOI: 10.1021/acs.jpcb.0c07763] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The primary stages of the Exiguobacterium sibiricum rhodopsin (ESR) photocycle were investigated by femtosecond absorption laser spectroscopy in the spectral range of 400-900 nm with a time resolution of 25 fs. The dynamics of the ESR photoreaction were compared with the reactions of bacteriorhodopsin (bR) in purple membranes (bRPM) and in recombinant form (bRrec). The primary intermediates of the ESR photocycle were similar to intermediates I, J, and K in bacteriorhodopsin photoconversion. The CONTIN program was applied to analyze the characteristic times of the observed processes and to clarify the reaction scheme. A similar photoreaction pattern was observed for all studied retinal proteins, including two consecutive dynamic Stokes shift phases lasting ∼0.05 and ∼0.15 ps. The excited state decays through a femtosecond reactive pathway, leading to retinal isomerization and formation of product J, and a picosecond nonreactive pathway that leads only to the initial state. Retinal photoisomerization in ESR takes 0.69 ps, compared with 0.48 ps in bRPM and 0.74 ps in bRrec. The nonreactive excited state decay takes 5 ps in ESR and ∼3 ps in bR. We discuss the similarity of the primary reactions of ESR and other retinal proteins.
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Affiliation(s)
| | - Tatiana B Feldman
- Emanuel Institute of Biochemical Physics, Moscow 119334, Russia.,Department of Biology, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Lada E Petrovskaya
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia
| | - Oksana V Nekrasova
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia
| | | | - Ivan V Shelaev
- Semenov Federal Research Center of Chemical Physics, Moscow 119991, Russia
| | - Fedor E Gostev
- Semenov Federal Research Center of Chemical Physics, Moscow 119991, Russia
| | | | - Irina B Kolchugina
- Department of Biology, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Dmitry A Dolgikh
- Department of Biology, Lomonosov Moscow State University, Moscow 119991, Russia.,Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia
| | - Victor A Nadtochenko
- Semenov Federal Research Center of Chemical Physics, Moscow 119991, Russia.,Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Mikhail P Kirpichnikov
- Department of Biology, Lomonosov Moscow State University, Moscow 119991, Russia.,Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia
| | - Mikhail A Ostrovsky
- Emanuel Institute of Biochemical Physics, Moscow 119334, Russia.,Department of Biology, Lomonosov Moscow State University, Moscow 119991, Russia
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4
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Gurchiek JK, Rose JB, Guberman-Pfeffer MJ, Tilluck RW, Ghosh S, Gascón JA, Beck WF. Fluorescence Anisotropy Detection of Barrier Crossing and Ultrafast Conformational Dynamics in the S 2 State of β-Carotene. J Phys Chem B 2020; 124:9029-9046. [PMID: 32955881 DOI: 10.1021/acs.jpcb.0c06961] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Carotenoids are usually only weakly fluorescent despite being very strong absorbers in the mid-visible region because their first two excited singlet states, S1 and S2, have very short lifetimes. To probe the structural mechanisms that promote the nonradiative decay of the S2 state to the S1 state, we have carried out a series of fluorescence lineshape and anisotropy measurements with a prototype carotenoid, β-carotene, in four aprotic solvents. The anisotropy values observed in the fluorescence emission bands originating from the S2 and S1 states reveal that the large internal rotations of the emission transition dipole moment, as much as 50° relative to that of the absorption transition dipole moment, are initiated during ultrafast evolution on the S2 state potential energy surface and persist upon nonradiative decay to the S1 state. Electronic structure calculations of the orientation of the transition dipole moment account for the anisotropy results in terms of torsional and pyramidal distortions near the center of the isoprenoid backbone. The excitation wavelength dependence of the fluorescence anisotropy indicates that these out-of-plane conformational motions are initiated by passage over a low-activation energy barrier from the Franck-Condon S2 structure. This conclusion is consistent with detection over the 80-200 K range of a broad, red-shifted fluorescence band from a dynamic intermediate evolving on a steep gradient of the S2 state potential energy surface after crossing the activation barrier. The temperature dependence of the oscillator strength and anisotropy indicate that nonadiabatic passage from S2 through a conical intersection seam to S1 is promoted by the out-of-plane motions of the isoprenoid backbone with strong hindrance by solvent friction.
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Affiliation(s)
- J K Gurchiek
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
| | - Justin B Rose
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
| | - Matthew J Guberman-Pfeffer
- Department of Chemistry, University of Connecticut, 55 North Eagleville Road, Storrs, Connecticut 06268-1712, United States
| | - Ryan W Tilluck
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
| | - Soumen Ghosh
- Department of Physics, Politecnico di Milano, Piazza Leonardo da Vinci, 32, Milan, Lombardy 20133, Italy
| | - José A Gascón
- Department of Chemistry, University of Connecticut, 55 North Eagleville Road, Storrs, Connecticut 06268-1712, United States
| | - Warren F Beck
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
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5
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Iyer ESS, Misra R, Maity A, Liubashevski O, Sudo Y, Sheves M, Ruhman S. Temperature Independence of Ultrafast Photoisomerization in Thermophilic Rhodopsin: Assessment versus Other Microbial Proton Pumps. J Am Chem Soc 2016; 138:12401-7. [DOI: 10.1021/jacs.6b05002] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Ramprasad Misra
- Department
of Organic Chemistry, The Weizmann Institute of Science, Rehovot 7610001, Israel
| | - Arnab Maity
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190501, Israel
| | - Oleg Liubashevski
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190501, Israel
| | - Yuki Sudo
- Division
of Pharmaceutical sciences, Okayama University, Kita-Ku, Okayama 700-0082, Japan
| | - Mordechai Sheves
- Department
of Organic Chemistry, The Weizmann Institute of Science, Rehovot 7610001, Israel
| | - Sanford Ruhman
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190501, Israel
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6
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Terpugov EL, Degtyareva OV. Photo-induced processes and the reaction dynamics of bacteriorhodopsin. Biophysics (Nagoya-shi) 2015. [DOI: 10.1134/s0006350915020189] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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7
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Ernst OP, Lodowski DT, Elstner M, Hegemann P, Brown L, Kandori H. Microbial and animal rhodopsins: structures, functions, and molecular mechanisms. Chem Rev 2014; 114:126-63. [PMID: 24364740 PMCID: PMC3979449 DOI: 10.1021/cr4003769] [Citation(s) in RCA: 808] [Impact Index Per Article: 73.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2013] [Indexed: 12/31/2022]
Affiliation(s)
- Oliver P. Ernst
- Departments
of Biochemistry and Molecular Genetics, University of Toronto, 1 King’s College Circle, Medical Sciences Building, Toronto, Ontario M5S 1A8, Canada
| | - David T. Lodowski
- Center
for Proteomics and Bioinformatics, Case
Western Reserve University School of Medicine, 10900 Euclid Avenue, Cleveland, Ohio 44106, United States
| | - Marcus Elstner
- Institute
for Physical Chemistry, Karlsruhe Institute
of Technology, Kaiserstrasse
12, 76131 Karlsruhe, Germany
| | - Peter Hegemann
- Institute
of Biology, Experimental Biophysics, Humboldt-Universität
zu Berlin, Invalidenstrasse
42, 10115 Berlin, Germany
| | - Leonid
S. Brown
- Department
of Physics and Biophysics Interdepartmental Group, University of Guelph, 50 Stone Road East, Guelph, Ontario N1G 2W1, Canada
| | - Hideki Kandori
- Department
of Frontier Materials, Nagoya Institute
of Technology, Showa-ku, Nagoya 466-8555, Japan
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8
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Wand A, Gdor I, Zhu J, Sheves M, Ruhman S. Shedding New Light on Retinal Protein Photochemistry. Annu Rev Phys Chem 2013; 64:437-58. [DOI: 10.1146/annurev-physchem-040412-110148] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Amir Wand
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Jerusalem 91904, Israel;
| | - Itay Gdor
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Jerusalem 91904, Israel;
| | - Jingyi Zhu
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Jerusalem 91904, Israel;
| | - Mordechai Sheves
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Sanford Ruhman
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Jerusalem 91904, Israel;
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9
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Wand A, Loevsky B, Friedman N, Sheves M, Ruhman S. Probing Ultrafast Photochemistry of Retinal Proteins in the Near-IR: Bacteriorhodopsin and Anabaena Sensory Rhodopsin vs Retinal Protonated Schiff Base in Solution. J Phys Chem B 2012; 117:4670-9. [DOI: 10.1021/jp309189y] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Amir Wand
- Institute of Chemistry
and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Edmond J. Safra
Campus, Givat Ram, Jerusalem 91904, Israel
| | - Boris Loevsky
- Institute of Chemistry
and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Edmond J. Safra
Campus, Givat Ram, Jerusalem 91904, Israel
| | - Noga Friedman
- Department of Organic
Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Mordechai Sheves
- Department of Organic
Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Sanford Ruhman
- Institute of Chemistry
and the Farkas Center for Light-Induced Processes, The Hebrew University of Jerusalem, Edmond J. Safra
Campus, Givat Ram, Jerusalem 91904, Israel
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10
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Kim JE, McCamant DW, Zhu L, Mathies RA. Resonance Raman Structural Evidence that the Cis-to-Trans Isomerization in Rhodopsin Occurs in Femtoseconds. J Phys Chem B 2012; 105:1240-9. [PMID: 16755302 PMCID: PMC1473983 DOI: 10.1021/jp001236s] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Picosecond time-resolved resonance Raman spectroscopy is used to probe the structural changes of rhodopsin's retinal chromophore as the cis-to-trans isomerization reaction occurs that initiates vision. Room-temperature resonance Raman spectra of rhodopsin's photoproduct with time delays from -0.7 to 20.8 ps are measured using 2.2 ps, 480 nm pump and 1.5 ps, 600 nm probe pulses. Hydrogen-out-of-plane (HOOP) modes at 852, 871, and 919 cm(-1), fingerprint peaks at 1272, 1236, 1211, and 1166 cm(-1), and a broad red-shifted ethylenic band at 1530 cm(-1) are present at the earliest positive pump-probe time delay of 0.8 ps, indicating that the chromophore is already in a strained, all-trans configuration. Kinetic analyses of both the HOOP and ethylenic regions of the photoproduct spectra reveal that these features grow in with fast ( approximately 200 fs) and slow ( approximately 2-3 ps) components. These data provide the first structural evidence that photorhodopsin has a thermally unrelaxed, torsionally strained all-trans chromophore within approximately 1 ps, and possibly within 200 fs, of photon absorption. Following this ultrafast product formation, the all-trans chromophore cools and conformationally relaxes within a few picoseconds to form bathorhodopsin. This cooling process is revealed as an ethylenic frequency blue-shift of 6 cm(-1) (tau approximately 3.5 ps) as well as an ethylenic width narrowing (tau approximately 2 ps). The ultrafast production of photorhodopsin is likely accompanied by an impulsively driven, localized protein response. More delocalized protein modes are unable to relax on this ultrafast time scale enabling the chromophore-protein complex to store the large amounts of photon energy (30-35 kcal/mol) that are subsequently used to drive activating protein conformational changes.
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Affiliation(s)
- J E Kim
- Department of Chemistry, University of California, Berkeley, California 94720
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11
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Wand A, Friedman N, Sheves M, Ruhman S. Ultrafast Photochemistry of Light-Adapted and Dark-Adapted Bacteriorhodopsin: Effects of the Initial Retinal Configuration. J Phys Chem B 2012; 116:10444-52. [DOI: 10.1021/jp2125284] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Amir Wand
- Institute of Chemistry and the
Farkash Center for Light-Induced Processes, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat
Ram, Jerusalem 91904, Israel
| | - Noga Friedman
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Mordechai Sheves
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Sanford Ruhman
- Institute of Chemistry and the
Farkash Center for Light-Induced Processes, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat
Ram, Jerusalem 91904, Israel
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12
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Wand A, Rozin R, Eliash T, Jung KH, Sheves M, Ruhman S. Asymmetric Toggling of a Natural Photoswitch: Ultrafast Spectroscopy of Anabaena Sensory Rhodopsin. J Am Chem Soc 2011; 133:20922-32. [DOI: 10.1021/ja208371g] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Amir Wand
- Institute of Chemistry and Farkash Center for Light-Induced Processes, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Rinat Rozin
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Tamar Eliash
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Kwang-Hwan Jung
- Department of Life Science and Institute of Biological Interfaces, Sogang University, Shinsu-Dong 1, Mapo-Gu, Seoul 121-742, South Korea
| | - Mordechai Sheves
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Sanford Ruhman
- Institute of Chemistry and Farkash Center for Light-Induced Processes, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
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13
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Loevsky B, Wand A, Bismuth O, Friedman N, Sheves M, Ruhman S. A New Spectral Window on Retinal Protein Photochemistry. J Am Chem Soc 2011; 133:1626-9. [DOI: 10.1021/ja1087387] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Boris Loevsky
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University, Jerusalem 91904, Israel
| | - Amir Wand
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University, Jerusalem 91904, Israel
| | - Oshrat Bismuth
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University, Jerusalem 91904, Israel
| | - Noga Friedman
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Mordechai Sheves
- Department of Organic Chemistry, The Weizmann Institute of Science, Rehovot 76100, Israel
| | - Sanford Ruhman
- Institute of Chemistry and the Farkas Center for Light-Induced Processes, The Hebrew University, Jerusalem 91904, Israel
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14
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Polívka T, Balashov SP, Chábera P, Imasheva ES, Yartsev A, Sundström V, Lanyi JK. Femtosecond carotenoid to retinal energy transfer in xanthorhodopsin. Biophys J 2009; 96:2268-77. [PMID: 19289053 DOI: 10.1016/j.bpj.2009.01.004] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2008] [Revised: 12/17/2008] [Accepted: 01/08/2009] [Indexed: 10/21/2022] Open
Abstract
Xanthorhodopsin of the extremely halophilic bacterium Salinibacter ruber represents a novel antenna system. It consists of a carbonyl carotenoid, salinixanthin, bound to a retinal protein that serves as a light-driven transmembrane proton pump similar to bacteriorhodopsin of archaea. Here we apply the femtosecond transient absorption technique to reveal the excited-state dynamics of salinixanthin both in solution and in xanthorhodopsin. The results not only disclose extremely fast energy transfer rates and pathways, they also reveal effects of the binding site on the excited-state properties of the carotenoid. We compared the excited-state dynamics of salinixanthin in xanthorhodopsin and in NaBH(4)-treated xanthorhodopsin. The NaBH(4) treatment prevents energy transfer without perturbing the carotenoid binding site, and allows observation of changes in salinixanthin excited-state dynamics related to specific binding. The S(1) lifetimes of salinixanthin in untreated and NaBH(4)-treated xanthorhodopsin were identical (3 ps), confirming the absence of the S(1)-mediated energy transfer. The kinetics of salinixanthin S(2) decay probed in the near-infrared region demonstrated a change of the S(2) lifetime from 66 fs in untreated xanthorhodopsin to 110 fs in the NaBH(4)-treated protein. This corresponds to a salinixanthin-retinal energy transfer time of 165 fs and an efficiency of 40%. In addition, binding of salinixanthin to xanthorhodopsin increases the population of the S(*) state that decays in 6 ps predominantly to the ground state, but a small fraction (<10%) of the S(*) state generates a triplet state.
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Affiliation(s)
- Tomás Polívka
- Institute of Physical Biology, University of South Bohemia, Nové Hrady, Czech Republic.
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15
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Alexandre MTA, van Grondelle R, Hellingwerf KJ, Robert B, Kennis JTM. Perturbation of the ground-state electronic structure of FMN by the conserved cysteine in phototropin LOV2 domains. Phys Chem Chem Phys 2008; 10:6693-702. [PMID: 18989482 DOI: 10.1039/b810040c] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In LOV2, the blue-light sensitive domain of phototropin, the primary photophysical event involves intersystem crossing (ISC) from the singlet-excited state to the triplet state. The ISC rate is enhanced in LOV2 as compared to flavin mononucleotide (FMN) in solution, which likely results from a heavy-atom effect of a nearby conserved cysteine, C450. Here, we applied fluorescence line narrowing (FLN), resonance Raman (RR) and Fourier-transform infrared (FTIR) spectroscopy to investigate the electronic structure of FMN bound to Avena sativa LOV2 (AsLOV2), its C450A mutant and Adiantum LOV2 (Phy3LOV2). We demonstrate that FLN is the method of choice to obtain accurate vibrational spectra on highly fluorescent flavoproteins. The vibrational spectrum of AsLOV2-C450A showed small but significant shifts with respect to those of wild type AsLOV2 and Phy3LOV2, with a systematic down-shift of Ring I vibrations, upshifts of Ring II and III vibrations and an upshift of the C2=O mode. These trends are similar to those in FMN model systems with an electron-donating group substituted at Ring I, known to induce a quinoid character to the electronic structure of oxidized flavin. Thus, enhancement of the ISC rate in LOV2 is induced through weak electron donation by the cysteine which mixes the FMN pi-electrons with the heavy sulfur orbitals, manifesting itself in a quinoid character of the ground electronic state of oxidized FMN. The proximity of the cysteine to FMN thus not only enables formation of a covalent adduct between FMN and cysteine, but also facilitates the rapid electronic formation of the reactive FMN triplet state.
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Affiliation(s)
- Maxime T A Alexandre
- Department of Biophysics, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081HV, Amsterdam, The Netherlands.
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16
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Excitation energy-transfer and the relative orientation of retinal and carotenoid in xanthorhodopsin. Biophys J 2008; 95:2402-14. [PMID: 18515390 DOI: 10.1529/biophysj.108.132175] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The cell membrane of Salinibacter ruber contains xanthorhodopsin, a light-driven transmembrane proton pump with two chromophores: a retinal and the carotenoid, salinixanthin. Action spectra for transport had indicated that light absorbed by either is utilized for function. If the carotenoid is an antenna in this protein, its excited state energy has to be transferred to the retinal and should be detected in the retinal fluorescence. From fluorescence studies, we show that energy transfer occurs from the excited singlet S(2) state of salinixanthin to the S(1) state of the retinal. Comparison of the absorption spectrum with the excitation spectrum for retinal emission yields 45 +/- 5% efficiency for the energy transfer. Such high efficiency would require close proximity and favorable geometry for the two polyene chains, but from the heptahelical crystallographic structure of the homologous retinal protein, bacteriorhodopsin, it is not clear where the carotenoid can be located near the retinal. The fluorescence excitation anisotropy spectrum reveals that the angle between their transition dipole moments is 56 +/- 3 degrees . The protein accommodates the carotenoid as a second chromophore in a distinct binding site to harvest light with both extended wavelength and polarization ranges. The results establish xanthorhodopsin as the simplest biological excited-state donor-acceptor system for collecting light.
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17
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Biesso A, Qian W, El-Sayed MA. Gold nanoparticle plasmonic field effect on the primary step of the other photosynthetic system in nature, bacteriorhodopsin. J Am Chem Soc 2008; 130:3258-9. [PMID: 18290646 DOI: 10.1021/ja7099858] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Arianna Biesso
- Georgia Institute of Technology, Department of Chemistry and Biochemistry 770 State Street, Atlanta, Georgia 30332, USA
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18
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Akemann W, Laage D, Plaza P, Martin MM, Blanchard-Desce M. Photoinduced intramolecular charge transfer in push-pull polyenes: effects of solvation, electron-donor group, and polyenic chain length. J Phys Chem B 2007; 112:358-68. [PMID: 17997542 DOI: 10.1021/jp075418z] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Subpicosecond absorption spectroscopy is used to characterize the primary photoinduced processes in a class of push-pull polyenes bearing a julolidine end group as the electron donor and a diethylthiobarbituric acid end group as the electron acceptor. The excited-state decay time and relaxation pathway have been studied for four polyenes of increasing chain length (n = 2-5 double bonds) in aprotic solvents of different solvation time, polarity, and viscosity. Intramolecular charge transfer (ICT) leading to a transient state of cyanine-like structure (fully conjugated with no bond length alternation) is observed in all polar solvents at a solvent dependent rate, but the reaction is not observed in cyclohexane, a nonpolar solvent. In polar solvents, the reaction time increases with the average solvation time but remains slightly larger, except in the viscous solvent triacetin. These facts are interpreted as an indication that both solvent reorganization and internal restructuring are involved in the ICT-state formation. The observed photodynamics resemble those we previously found for another class of polyenes bearing a dibutylaniline group as the donor, including a similar charge-transfer rate in spite of the larger electron donor character of the julolidine group. This observation brings further support to the proposal that an intramolecular coordinate is involved in the charge-transfer reaction, possibly a torsional motion of the donor end group. On the other hand, relaxation of the ICT state leads to cis-trans isomerization or crossing to the triplet state, depending on the length of the polyenic chain. In dioxane, tetrahydrofuran, and triacetin, the ICT state of the shorter chains (n = 2, 3) relaxes to the isomer with a viscosity-dependent rate, while that of the longer ones (n = 4, 5) leads to the triplet state with a viscosity-independent rate, as expected. In acetonitrile, the ICT-state lifetime is generally much shorter. A change from photoisomerization to intersystem crossing at n = 4 is also proposed in this solvent, but the formation of a photoproduct at n = 2 is not clear. In cyclohexane, where the ICT state is not formed, the relaxation pathway of the initially excited state is found to lead to an isomer for n = 2. As in polar solvents, a change to intersystem crossing at n = 4 is proposed. The direct relaxation to the ground state found at n = 3 for the series bearing a dibutylaniline group is not observed with the julolidine group. The results clearly illustrate that photoinduced reaction trajectories in push-pull polyenes are controlled by the static and dynamic properties of the solvent, the chemical nature and size of the end groups, and the conjugated-chain length and flexibility.
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Affiliation(s)
- Walther Akemann
- UMR CNRS 8640, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France
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19
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Bismuth O, Friedman N, Sheves M, Ruhman S. Photochemical dynamics of all-trans retinal protonated Schiff-base in solution: Excitation wavelength dependence. Chem Phys 2007. [DOI: 10.1016/j.chemphys.2007.06.052] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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20
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Schenkl S, Zgrablić G, Portuondo-Campa E, Haacke S, Chergui M. On the excitation wavelength dependence of the fluorescence of bacteriorhodopsin. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.04.086] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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21
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McCamant DW, Kukura P, Mathies RA. Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin. J Phys Chem B 2007; 109:10449-57. [PMID: 16852266 PMCID: PMC1544036 DOI: 10.1021/jp050095x] [Citation(s) in RCA: 105] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Femtosecond time-resolved stimulated Raman spectroscopy (FSRS) is used to examine the photoisomerization dynamics in the excited state of bacteriorhodopsin. Near-IR stimulated emission is observed in the FSRS probe window that decays with a 400-600-fs time constant. Additionally, dispersive vibrational lines appear at the locations of the ground-state vibrational frequencies and decay with a 260-fs time constant. The dispersive line shapes are caused by a nonlinear effect we term Raman initiated by nonlinear emission (RINE) that generates vibrational coherence on the ground-state surface. Theoretical expressions for the RINE line shapes are developed and used to fit the spectral and temporal evolution of the spectra. The rapid 260-fs decay of the RINE peak intensity, compared to the slower evolution of the stimulated emission, indicates that the excited-state population moves in approximately 260 fs to a region on the potential energy surface where the RINE signal is attenuated. This loss of RINE signal is best explained by structural evolution of the excited-state population along multiple low-frequency modes that carry the molecule out of the harmonic photochemically inactive Franck-Condon region and into the photochemically active geometry.
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Affiliation(s)
- David W McCamant
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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22
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Masciangioli T, Devanathan S, Cusanovich MA, Tollin G, El-Sayed MA. Probing the Primary Event in the Photocycle of Photoactive Yellow Protein Using Photochemical Hole-burning Technique¶. Photochem Photobiol 2007. [DOI: 10.1562/0031-8655(2000)0720639ptpeit2.0.co2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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23
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Schenkl S, van Mourik F, Friedman N, Sheves M, Schlesinger R, Haacke S, Chergui M. Insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption. Proc Natl Acad Sci U S A 2006; 103:4101-6. [PMID: 16537491 PMCID: PMC1449653 DOI: 10.1073/pnas.0506303103] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A visible-pump/UV-probe transient absorption is used to characterize the ultrafast dynamics of bacteriorhodopsin with 80-fs time resolution. We identify three spectral components in the 265- to 310-nm region, related to the all-trans retinal, tryptophan (Trp)-86 and the isomerized photoproduct, allowing us to map the dynamics from reactants to products, along with the response of Trp amino acids. The signal of the photoproduct appears with a time delay of approximately 250 fs and is characterized by a steep rise ( approximately 150 fs), followed by additional rise and decay components, with time scales characteristic of the J intermediate. The delayed onset and the steep rise point to an impulsive formation of a transition state on the way to isomerization. We argue that this impulsive formation results from a splitting of a wave packet of torsional modes on the potential surface at the branching between the all-trans and the cis forms. Parallel to these dynamics, the signal caused by Trp response rises in approximately 200 fs, because of the translocation of charge along the conjugate chain, and possible mechanisms are presented, which trigger isomerization.
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Affiliation(s)
- S. Schenkl
- *Laboratoire de Spectroscopie Ultrarapide, Institut des Sciences et Ingeniérie Chimiques, Faculté des Sciences de Base, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland
| | - F. van Mourik
- *Laboratoire de Spectroscopie Ultrarapide, Institut des Sciences et Ingeniérie Chimiques, Faculté des Sciences de Base, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland
| | - N. Friedman
- Departments of Organic Chemistry and Chemical Services, The Weizmann Institute of Sciences, Rehovot 76100, Israel; and
| | - M. Sheves
- Departments of Organic Chemistry and Chemical Services, The Weizmann Institute of Sciences, Rehovot 76100, Israel; and
| | - R. Schlesinger
- Institute for Structural Biology, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - S. Haacke
- *Laboratoire de Spectroscopie Ultrarapide, Institut des Sciences et Ingeniérie Chimiques, Faculté des Sciences de Base, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland
| | - M. Chergui
- *Laboratoire de Spectroscopie Ultrarapide, Institut des Sciences et Ingeniérie Chimiques, Faculté des Sciences de Base, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland
- To whom correspondence should be addressed. E-mail:
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25
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Gensch T, Viappiani C. Introducing the Time-resolved methods in biophysics series. Photochem Photobiol Sci 2006; 5:1101-2. [PMID: 17136273 DOI: 10.1039/b615863n] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Nozaki D, Iwata T, Tokutomi S, Kandori H. Unique temperature dependence in the adduct formation between FMN and cysteine S-H group in the LOV2 domain of Adiantum phytochrome3. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.05.049] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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27
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Balzer B, Stock G. Modeling of decoherence and dissipation in nonadiabatic photoreactions by an effective-scaling nonsecular Redfield algorithm. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2004.10.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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28
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Vengris M, Larsen DS, van der Horst MA, Larsen OFA, Hellingwerf KJ, van Grondelle R. Ultrafast Dynamics of Isolated Model Photoactive Yellow Protein Chromophores: “Chemical Perturbation Theory” in the Laboratory. J Phys Chem B 2005; 109:4197-208. [PMID: 16851482 DOI: 10.1021/jp045763d] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Pump-probe and pump-dump probe experiments have been performed on several isolated model chromophores of the photoactive yellow protein (PYP). The observed transient absorption spectra are discussed in terms of the spectral signatures ascribed to solvation, excited-state twisting, and vibrational relaxation. It is observed that the protonation state has a profound effect on the excited-state lifetime of p-coumaric acid. Pigments with ester groups on the coumaryl tail end and charged phenolic moieties show dynamics that are significantly different from those of other pigments. Here, an unrelaxed ground-state intermediate could be observed in pump-probe signals. A similar intermediate could be identified in the sinapinic acid and in isomerization-locked chromophores by means of pump-dump probe spectroscopy; however, in these compounds it is less pronounced and could be due to ground-state solvation and/or vibrational relaxation. Because of strong protonation-state dependencies and the effect of electron donor groups, it is argued that charge redistribution upon excitation determines the twisting reaction pathway, possibly through interaction with the environment. It is suggested that the same pathway may be responsible for the initiation of the photocycle in native PYP.
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Affiliation(s)
- Mikas Vengris
- Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands.
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29
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Salgado GFJ, Struts AV, Tanaka K, Fujioka N, Nakanishi K, Brown MF. Deuterium NMR structure of retinal in the ground state of rhodopsin. Biochemistry 2004; 43:12819-28. [PMID: 15461454 DOI: 10.1021/bi0491191] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The conformation of retinal bound to the G protein-coupled receptor rhodopsin is intimately linked to its photochemistry, which initiates the visual process. Site-directed deuterium ((2)H) NMR spectroscopy was used to investigate the structure of retinal within the binding pocket of bovine rhodopsin. Aligned recombinant membranes were studied containing rhodopsin that was regenerated with retinal (2)H-labeled at the C(5), C(9), or C(13) methyl groups by total synthesis. Studies were conducted at temperatures below the gel to liquid-crystalline phase transition of the membrane lipid bilayer, where rotational and translational diffusion of rhodopsin is effectively quenched. The experimental tilt series of (2)H NMR spectra were fit to a theoretical line shape analysis [Nevzorov, A. A., Moltke, S., Heyn, M. P., and Brown, M. F. (1999) J. Am. Chem. Soc. 121, 7636-7643] giving the retinylidene bond orientations with respect to the membrane normal in the dark state. Moreover, the relative orientations of pairs of methyl groups were used to calculate effective torsional angles between different planes of unsaturation of the retinal chromophore. Our results are consistent with significant conformational distortion of retinal, and they have important implications for quantum mechanical calculations of its electronic spectral properties. In particular, we find that the beta-ionone ring has a twisted 6-s-cis conformation, whereas the polyene chain is twisted 12-s-trans. The conformational strain of retinal as revealed by solid-state (2)H NMR is significant for explaining the quantum yields and mechanism of its ultrafast photoisomerization in visual pigments. This work provides a consensus view of the retinal conformation in rhodopsin as seen by X-ray diffraction, solid-state NMR spectroscopy, and quantum chemical calculations.
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Affiliation(s)
- Gilmar F J Salgado
- Departments of Biochemistry and Molecular Biophysics, University of Arizona, Tucson, Arizona 85721, USA
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30
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Balzer B, Stock G. Transient Spectral Features of a cis−trans Photoreaction in the Condensed Phase: A Model Study. J Phys Chem A 2004. [DOI: 10.1021/jp048965i] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Birgit Balzer
- Institute of Physical and Theoretical Chemistry, J. W. Goethe University, Marie-Curie-Strasse 11, D-60439 Frankfurt, Germany
| | - Gerhard Stock
- Institute of Physical and Theoretical Chemistry, J. W. Goethe University, Marie-Curie-Strasse 11, D-60439 Frankfurt, Germany
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31
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Glasbeek M, Zhang H. Femtosecond Studies of Solvation and Intramolecular Configurational Dynamics of Fluorophores in Liquid Solution. Chem Rev 2004; 104:1929-54. [PMID: 15080717 DOI: 10.1021/cr0206723] [Citation(s) in RCA: 214] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Max Glasbeek
- Laboratory for Physical Chemistry, University of Amsterdam, Nieuwe Achtergracht 129, 1018 WS Amsterdam, The Netherlands.
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32
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Chosrowjan H, Taniguchi S, Mataga N, Unno M, Yamauchi S, Hamada N, Kumauchi M, Tokunaga F. Low-Frequency Vibrations and Their Role in Ultrafast Photoisomerization Reaction Dynamics of Photoactive Yellow Protein. J Phys Chem B 2004. [DOI: 10.1021/jp031126w] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Haik Chosrowjan
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Seiji Taniguchi
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Noboru Mataga
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Masashi Unno
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Seigo Yamauchi
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Norio Hamada
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Masato Kumauchi
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
| | - Fumio Tokunaga
- Institute for Laser Technology, Utsubo-Hommachi 1-8-4, Nishiku, Osaka 550-0004, Japan, Institute for Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan, and Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 550-0043, Japan
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33
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Ankerhold J, Lehle H. Low temperature electron transfer in strongly condensed phase. J Chem Phys 2004; 120:1436-49. [PMID: 15268269 DOI: 10.1063/1.1630297] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Electron transfer coupled to a collective vibronic degree of freedom is studied in strongly condensed phase and at lower temperatures where quantum fluctuations are essential. Based on an exact representation of the reduced density matrix of the electronic + reaction coordinate compound in terms of path integrals, recent findings on the overdamped limit in quantum dissipative systems are employed. This allows us to give a consistent generalization of the well-known Zusman equations to the quantum domain. Detailed conditions for the range of validity are specified. Using the Wigner transform these results are also extended to the quantum dynamics in full phase space. As an important application electronic transfer rates are derived that comprise adiabatic and nonadiabatic processes in the low temperature regime including nuclear tunneling. Accurate agreement with precise quantum Monte Carlo data is observed.
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Affiliation(s)
- Joachim Ankerhold
- Physikalisches Institut, Albert-Ludwigs-Universitat Freiburg, Hermann-Herder-Strasse 3, 79104 Freiburg, Germany.
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34
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Kim JE, Tauber MJ, Mathies RA. Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin. Biophys J 2003; 84:2492-501. [PMID: 12668457 PMCID: PMC1302815 DOI: 10.1016/s0006-3495(03)75054-1] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
The photoreaction quantum yield of rhodopsin is wavelength dependent: phi(lambda) is reduced by up to 5% at wavelengths to the red of 500 nm but is invariant (phi = 0.65 +/- 0.01) between 450 and 500 nm (Kim et al., 2001). To understand this nonstatistical internal conversion process, these results are compared with predictions of a Landau-Zener model for dynamic curve crossing. The initial distribution of excess photon energy in the 28 Franck-Condon active vibrational modes of rhodopsin is defined by a fully thermalized sum-over-states vibronic calculation. This calculation reveals that absorption by high-frequency unreactive modes (e.g., C[double bond]C stretches) increases as the excitation wavelength is shifted from 570 to 450 nm whereas relatively less energy is deposited into reactive low-frequency modes. This result qualitatively explains the experimentally observed wavelength dependence of phi(lambda) for rhodopsin and reveals the importance of delocalized, torsional modes in the reactive pathway.
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Affiliation(s)
- Judy E Kim
- Department of Chemistry, University of California at Berkeley, Berkeley, California 94720 USA
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35
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Ruhman S, Hou B, Friedman N, Ottolenghi M, Sheves M. Following evolution of bacteriorhodopsin in its reactive excited state via stimulated emission pumping. J Am Chem Soc 2002; 124:8854-8. [PMID: 12137538 DOI: 10.1021/ja026426q] [Citation(s) in RCA: 102] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
New information concerning the photochemical dynamics of bacteriorhodopsin (BR) is obtained by impulsively stimulating emission from the reactive fluorescent state. Depletion of the excited-state fluorescence leads to an equal reduction in production of later photoproducts. Accordingly, chromophores which are forced back to the ground state via emission do not continue on in the photocycle, conclusively demonstrating that the fluorescent state is a photocycle intermediate. The insensitivity of depletion dynamics to the "dump" pulse timing, throughout the fluorescent states lifetime, and the biological inactivity of the dumped population suggest that the fluorescent-state structure is constant, well-defined, and significantly different than that where crossing to the ground state takes place naturally. In conjunction with conclusions from comparing the photophysics of BR with those of synthetic analogues containing "locked" retinals, present results show that large-amplitude torsion around C13=C14 is required to go between the above structures.
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Affiliation(s)
- Sanford Ruhman
- Department of Physical Chemistry and The Farkas Center for Light Induced Processes, The Hebrew University, Jerusalem 91904, Israel.
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36
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Laage D, Plaza P, Blanchard-Desce M, Martin MM. Multiple relaxation pathways in push-pull polyenes. Photochem Photobiol Sci 2002; 1:526-35. [PMID: 12659165 DOI: 10.1039/b203201p] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Subpicosecond absorption and gain spectroscopy are used to investigate the excited-state behavior of push-pull polyenes made of a diethylthiobarbituric acid electron-acceptor group and a dibutylaniline electron-donor group linked by a pi-conjugated chain. Four polyenes of increasing length, ranging from n = 2 to 5 double bonds, are compared. The relaxation path and relaxation kinetics are studied in dioxane and in cyclohexane, a polar and a nonpolar solvent, respectively. In dioxane, the results provide evidence for the formation of an emissive transient state on an ultrashort time scale (2-3 ps) attributed to a charge transfer (CT) state. The regular shift of the gain peak of this transient state with increase in the chain length (ca. 100 nm per added double bond) indicates that its structure is similar to that of a cyanine, i.e. with a fully conjugated polyenic chain. Its lifetime ranges from a few tens to a few hundreds of picoseconds depending on the chain length. When the number of double bonds increases from n = 2 to 3, the lifetime increases, then decreases continuously for longer chains. In cyclohexane, where the transient CT state is not formed, the decay of the initial excited state follows the same trend when the chain length increases but the lifetimes are shorter than that of the CT state in dioxane. In both solvents, the characterization of long-lived photoproducts by synchronizing two low repetition-rate subpicosecond laser systems demonstrates a change in the relaxation route as the chain length increases. Isomerization occurs for n = 2, whereas intersystem crossing to the triplet state occurs for n = 4. The change in the relaxation channel is observed for n = 3 in both solvents with however a solvent-dependent behavior. In dioxane, relaxation to the triplet state is already observed for n = 3, while an intermediate regime with a relaxation directly to the ground state is observed in cyclohexane. The photophysics of the studied push-pull polyenes is tentatively compared to that of polymethine cyanines and substituted carotenoids.
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Affiliation(s)
- Damien Laage
- Département de Chimie, Ecole Normale Supérieure (UMR CNRS 8640 PASTEUR), 24 rue Lhomond, 75231 Paris Cedex 05, France
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37
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Kandori H, Ichioka T, Sasaki M. Photoisomerization of the rhodopsin chromophore in clay interlayers at 77 K. Chem Phys Lett 2002. [DOI: 10.1016/s0009-2614(02)00096-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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38
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Kandori H, Tomioka H, Sasabe H. Excited-State Dynamics of pharaonis Phoborhodopsin Probed by Femtosecond Fluorescence Spectroscopy. J Phys Chem A 2002. [DOI: 10.1021/jp012447f] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hideki Kandori
- Department of Applied Chemistry, Nagoya Institute of Technology, Showa-ku, Nagoya 466-8555, Japan
| | - Hiroaki Tomioka
- Department of Chemistry, Faculty of Education, Saitama University, 255 Shimo-Ohokubo, Saitama 338-8570, Japan
| | - Hiroyuki Sasabe
- Department of Photonics Materials Science, Chitose Institute of Science & Technology, 758-65 Bibi, Chitose, Hokkaido 066-8655, Japan
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39
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Schenkl S, Portuondo E, Zgrablić G, Chergui M, Haacke S, Friedman N, Sheves M. Ultrafast energy relaxation in bacteriorhodopsin studied by time-integrated fluorescence. Phys Chem Chem Phys 2002. [DOI: 10.1039/b205453a] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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41
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Xu QH, Fleming GR. Isomerization Dynamics of 1,1’-Diethyl-4,4’-Cyanine (1144C) Studied by Different Third-Order Nonlinear Spectroscopic Measurements. J Phys Chem A 2001. [DOI: 10.1021/jp011924r] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Qing-Hua Xu
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
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Hou B, Friedman N, Ruhman S, Sheves M, Ottolenghi M. Ultrafast Spectroscopy of the Protonated Schiff Bases of Free and C13C14 Locked Retinals. J Phys Chem B 2001. [DOI: 10.1021/jp0034980] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- B. Hou
- Department of Physical Chemistry, The Hebrew University, Jerusalem 91904, Israel and The Weizmann Institute of Science, Rehovot 76100, Israel
| | - N. Friedman
- Department of Physical Chemistry, The Hebrew University, Jerusalem 91904, Israel and The Weizmann Institute of Science, Rehovot 76100, Israel
| | - S. Ruhman
- Department of Physical Chemistry, The Hebrew University, Jerusalem 91904, Israel and The Weizmann Institute of Science, Rehovot 76100, Israel
| | - M. Sheves
- Department of Physical Chemistry, The Hebrew University, Jerusalem 91904, Israel and The Weizmann Institute of Science, Rehovot 76100, Israel
| | - M. Ottolenghi
- Department of Physical Chemistry, The Hebrew University, Jerusalem 91904, Israel and The Weizmann Institute of Science, Rehovot 76100, Israel
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Haacke S, Vinzani S, Schenkl S, Chergui M. Spectral and Kinetic Fluorescence Properties of Native and Nonisomerizing Retinal in Bacteriorhodopsin. Chemphyschem 2001; 2:310-5. [DOI: 10.1002/1439-7641(20010518)2:5<310::aid-cphc310>3.0.co;2-c] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2000] [Indexed: 11/11/2022]
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45
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Lutz I, Sieg A, Wegener AA, Engelhard M, Boche I, Otsuka M, Oesterhelt D, Wachtveitl J, Zinth W. Primary reactions of sensory rhodopsins. Proc Natl Acad Sci U S A 2001; 98:962-7. [PMID: 11158578 PMCID: PMC14692 DOI: 10.1073/pnas.98.3.962] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The first steps in the photocycles of the archaeal photoreceptor proteins sensory rhodopsin (SR) I and II from Halobacterium salinarum and SRII from Natronobacterium pharaonis have been studied by ultrafast pump/probe spectroscopy and steady-state fluorescence spectroscopy. The data for both species of the blue-light receptor SRII suggests that their primary reactions are nearly analogous with a fast decay of the excited electronic state in 300-400 fs and a transition between two red-shifted product states in 4-5 ps. Thus SRII behaves similarly to bacteriorhodopsin. In contrast for SRI at pH 6.0, which absorbs in the orange part of the spectrum, a strongly increased fluorescence quantum yield and a drastically slower and biexponential decay of the excited electronic state occurring on the picosecond time scale (5 ps and 33 ps) is observed. The results suggest that the primary reactions are controlled by the charge distribution in the vicinity of the Schiff base and demonstrate that there is no direct connection between absorption properties and reaction dynamics for the retinal protein family.
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Affiliation(s)
- I Lutz
- Sektion Physik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, 80538 Munich, Germany
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Yan M, Rothberg L, Callender R. Femtosecond Dynamics of Rhodopsin Photochemistry Probed by a Double Pump Spectroscopic Approach. J Phys Chem B 2001. [DOI: 10.1021/jp002036j] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ming Yan
- Lawrence Livermore National Laboratory, Livermore, California 94550, Department of Chemistry, University of Rochester, Rochester, New York 14627, and Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461
| | - Louis Rothberg
- Lawrence Livermore National Laboratory, Livermore, California 94550, Department of Chemistry, University of Rochester, Rochester, New York 14627, and Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461
| | - Robert Callender
- Lawrence Livermore National Laboratory, Livermore, California 94550, Department of Chemistry, University of Rochester, Rochester, New York 14627, and Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461
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47
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Chapter 2 Triggering of photomovement - molecular basis. ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s1568-461x(01)80006-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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48
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Masciangioli T, Devanathan S, Cusanovich MA, Tollin G, el-Sayed MA. Probing the primary event in the photocycle of photoactive yellow protein using photochemical hole-burning technique. Photochem Photobiol 2000; 72:639-44. [PMID: 11107849 DOI: 10.1562/0031-8655(2000)072<0639:ptpeit>2.0.co;2] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Photochemical hole-burning spectroscopy was used to study the excited-state electronic structure of the 4-hydroxycinnamyl chromophore in photoactive yellow protein (PYP). This system is known to undergo a trans-to-cis isomerization process on a femtosecond-to-picosecond time scale, similar to membrane-bound rhodopsins, and is characterized by a broad featureless absorbance at 446 nm. Resolved vibronic structure was observed for the hole-burned spectra obtained when PYP in phosphate buffer at pH 7 was frozen at low temperature and irradiated with narrow bandwidth laser light at 431 nm. The approximate homogeneous width of 752 cm-1 could be calculated from the deconvolution of the hole-burned spectra leading to an estimated dephasing time of approximately 14 fs for the PYP excited-state structure. The resolved vibronic structure also enabled us to obtain an estimated change in the C=C stretching frequency, from 1663 cm-1 in the ground state to approximately 1429 cm-1 upon photoexcitation. The results obtained allowed us to speculate about the excited-state structure of PYP. We discuss the data for PYP in relation to the excited-state model proposed for the photosynthetic membrane protein bacteriorhodopsin, and use it to explain the primary event in the function of photoactive biological protein systems. Photoexcitation was also carried out at 475 nm. The vibronic structure obtained was quite different both in terms of the frequencies and Franck-Condon envelope. The origin of this spectrum was tentatively assigned.
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Affiliation(s)
- T Masciangioli
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta 30332, USA
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49
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Mataga N, Chosrowjan H, Shibata Y, Imamoto Y, Tokunaga F. Effects of Modification of Protein Nanospace Structure and Change of Temperature on the Femtosecond to Picosecond Fluorescence Dynamics of Photoactive Yellow Protein. J Phys Chem B 2000. [DOI: 10.1021/jp994205+] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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50
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Lou J, Tan Q, Karnaukhova E, Berova N, Nakanishi K, Crouch RK. Synthetic retinals: convenient probes of rhodopsin and visual transduction process. Methods Enzymol 2000; 315:219-37. [PMID: 10736705 DOI: 10.1016/s0076-6879(00)15846-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/14/2023]
Affiliation(s)
- J Lou
- Department of Chemistry, Columbia University, New York, New York 10027, USA
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