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Gong D, Scherer NF. Tandem aberration correction optics (TACO) in wide-field structured illumination microscopy. BIOMEDICAL OPTICS EXPRESS 2023; 14:6381-6396. [PMID: 38420301 PMCID: PMC10898552 DOI: 10.1364/boe.503801] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/08/2023] [Accepted: 11/09/2023] [Indexed: 03/02/2024]
Abstract
Structured illumination microscopy (SIM) is a powerful super-resolution imaging technique that uses patterned illumination to down-modulate high spatial-frequency information of samples. However, the presence of spatially-dependent aberrations can severely disrupt the illumination pattern, limiting the quality of SIM imaging. Conventional adaptive optics (AO) techniques that employ wavefront correctors at the pupil plane are not capable of effectively correcting these spatially-dependent aberrations. We introduce the Tandem Aberration Correction Optics (TACO) approach that combines both pupil AO and conjugate AO for aberration correction in SIM. TACO incorporates a deformable mirror (DM) for pupil AO in the detection path to correct for global aberrations, while a spatial light modulator (SLM) is placed at the plane conjugate to the aberration source near the sample plane, termed conjugate AO, to compensate spatially-varying aberrations in the illumination path. Our numerical simulations and experimental results show that the TACO approach can recover the illumination pattern close to an ideal condition, even when severely misshaped by aberrations, resulting in high-quality super-resolution SIM reconstruction. The TACO approach resolves a critical traditional shortcoming of aberration correction for structured illumination. This advance significantly expands the application of SIM imaging in the study of complex, particularly biological, samples and should be effective in other wide-field microscopies.
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Affiliation(s)
- Daozheng Gong
- Graduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637, USA
- Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, USA
| | - Norbert F. Scherer
- Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, USA
- Department of Chemistry, University of Chicago, Chicago, IL 60637, USA
- James Franck Institute, University of Chicago, Chicago, IL 60637, USA
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Akyol E, Hagag AM, Sivaprasad S, Lotery AJ. Adaptive optics: principles and applications in ophthalmology. Eye (Lond) 2021; 35:244-264. [PMID: 33257798 PMCID: PMC7852593 DOI: 10.1038/s41433-020-01286-z] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Revised: 10/19/2020] [Accepted: 11/04/2020] [Indexed: 12/26/2022] Open
Abstract
This is a comprehensive review of the principles and applications of adaptive optics (AO) in ophthalmology. It has been combined with flood illumination ophthalmoscopy, scanning laser ophthalmoscopy, as well as optical coherence tomography to image photoreceptors, retinal pigment epithelium (RPE), retinal ganglion cells, lamina cribrosa and the retinal vasculature. In this review, we highlight the clinical studies that have utilised AO to understand disease mechanisms. However, there are some limitations to using AO in a clinical setting including the cost of running an AO imaging service, the time needed to scan patients, the lack of normative databases and the very small size of area imaged. However, it is undoubtedly an exceptional research tool that enables visualisation of the retina at a cellular level.
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Affiliation(s)
- Engin Akyol
- Faculty of Medicine, University of Southampton, Southampton, SO17 1BJ, UK
| | - Ahmed M Hagag
- NIHR Moorfields Biomedical Research Centre, Moorfields Eye Hospital NHS Foundation Trust, London, EC1V 2PD, UK
- UCL Institute of Ophthalmology, London, EC1V 9EL, UK
| | - Sobha Sivaprasad
- NIHR Moorfields Biomedical Research Centre, Moorfields Eye Hospital NHS Foundation Trust, London, EC1V 2PD, UK
- UCL Institute of Ophthalmology, London, EC1V 9EL, UK
| | - Andrew J Lotery
- Faculty of Medicine, University of Southampton, Southampton, SO17 1BJ, UK.
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Rajaeipour P, Dorn A, Banerjee K, Zappe H, Ataman Ç. Extended field-of-view adaptive optics in microscopy via numerical field segmentation. APPLIED OPTICS 2020; 59:3784-3791. [PMID: 32400506 DOI: 10.1364/ao.388000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 03/19/2020] [Indexed: 06/11/2023]
Abstract
Sample-induced optical aberrations in microscopy are, in general, field dependent, limiting their correction via pupil adaptive optics (AO) to the center of the available field-of-view (FoV). This is a major hindrance, particularly for deep tissue imaging, where AO has a significant impact. We present a new wide-field AO microscopy scheme, in which the deformable element is located at the pupil plane of the objective. To maintain high-quality correction across its entirety, the FoV is partitioned into small segments, and a separate aberration estimation is performed for each via a modal-decomposition-based indirect wavefront sensing algorithm. A final full-field image is synthesized by stitching of the partitions corrected consecutively and independently via their respective measured aberrations. The performance and limitations of the method are experimentally explored on synthetic samples imaged via a custom-developed AO fluorescence microscope featuring an optofluidic refractive wavefront modulator.
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Hu L, Hu S, Li Y, Gong W, Si K. Reliability of wavefront shaping based on coherent optical adaptive technique in deep tissue focusing. JOURNAL OF BIOPHOTONICS 2020; 13:e201900245. [PMID: 31622537 DOI: 10.1002/jbio.201900245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Revised: 09/12/2019] [Accepted: 10/16/2019] [Indexed: 06/10/2023]
Abstract
Wavefront shaping can compensate the wavefront distortions in deep tissue focusing, leading to an improved penetration depth. However, when using the backscattered signals as the feedback, unexpected compensation bias may be introduced, resulting in focusing position deviations or even no focus in the illumination focal plane. Here we investigated the reliability of wavefront shaping based on coherent optical adaptive technique in deep tissue focusing by measuring the position deviations between the foci in the illumination focal plane and the epi-detection plane. The experimental results show that when the penetration depth reaches 150 μm in mouse brain tissue (with scattering coefficient ~22.42 mm-1 ) using a 488 nm laser and an objective lens with 0.75 numerical aperture, the center of the real focus will deviate out of one radius range of the Airy disk while the optimized focus in the epi-detection plane maintained basically at the center. With the penetration depth increases, the peak to background ratio of the focus in the illumination focal plane decreases faster than that in the epi-detection plane. The results indicate that when the penetration depth reaches 150 μm, feedback based on backscattered signals will make wavefront shaping lose its reliability, which may provide a guidance for applications of non-invasive precise optogenetics or deep tissue optical stimulation using wavefront shaping methods. A, Intensity distribution in the epi-detection plane and the illumination focal plane before and after correction, corresponding to brain sections with 250 and 300 μm thickness, respectively. Scale bar is 2 μm. B, Averaged focusing deviations in the epi-detection plane (optimized) and the illumination focal plane (monitored) after compensation. The unit of the ordinate is one Airy disk diameter. Black dashed line represents one Airy disk radius. Bars represent the SE of each measurement set.
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Affiliation(s)
- Lejia Hu
- State Key Laboratory of Modern Optical Instrumentation, Department of Neurobiology of the First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Shuwen Hu
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Younong Li
- Centre for Neuroscience, Department of Neurobiology, NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University School of Medicine, Hangzhou, China
| | - Wei Gong
- Centre for Neuroscience, Department of Neurobiology, NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University School of Medicine, Hangzhou, China
| | - Ke Si
- State Key Laboratory of Modern Optical Instrumentation, Department of Neurobiology of the First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
- Centre for Neuroscience, Department of Neurobiology, NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University School of Medicine, Hangzhou, China
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Wu C, Chen J, Si K, Song Y, Zhu X, Hu L, Zheng Y, Gong W. Aberration corrections of doughnut beam by adaptive optics in the turbid medium. JOURNAL OF BIOPHOTONICS 2019; 12:e201900125. [PMID: 31291061 DOI: 10.1002/jbio.201900125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2019] [Revised: 07/03/2019] [Accepted: 07/09/2019] [Indexed: 06/09/2023]
Abstract
The doughnut beam is a spatially structured beam which has been widely used in super-resolution microscopy, laser trapping and so on. However, when it passes through thick scattering medium, aberrations will seriously affect its performance. Currently, adaptive optics (AO) has become one of the most powerful tools to compensate aberrations. However, conventional AO always suffers from limited corrected field of view (FOV). Here, we propose a method with conjugate AO system based on coherent optical adaptive technique. The results show that the corrected FOV can be improved effectively. For a wide range of the optical applications with doughnut beam, our method has potentials in correcting aberrations with high speed in turbid media.(A) Mouse brain slice, (B) the distribution of r PAO , (C) the distribution of r CAO . The vortex beam focus of the blue point in (B) and (C) among a 137.5 × 137.5 μm FOV (D1) ideally, (D2) with scattering, (D3) in pupil AO system and (D4) in conjugate AO system.
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Affiliation(s)
- Chenxue Wu
- State Key Laboratory of Modern Optical Instrumentation, Center for Neuroscience and Department of Neurobiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Jiajia Chen
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Ke Si
- State Key Laboratory of Modern Optical Instrumentation, Center for Neuroscience and Department of Neurobiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Yanchun Song
- State Key Laboratory of Modern Optical Instrumentation, Center for Neuroscience and Department of Neurobiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
| | - Xinpei Zhu
- State Key Laboratory of Modern Optical Instrumentation, Center for Neuroscience and Department of Neurobiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
| | - Lejia Hu
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Yao Zheng
- State Key Laboratory of Modern Optical Instrumentation, Center for Neuroscience and Department of Neurobiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, China
| | - Wei Gong
- State Key Laboratory of Modern Optical Instrumentation, Center for Neuroscience and Department of Neurobiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
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Zhang Y, Wu C, Song Y, Si K, Zheng Y, Hu L, Chen J, Tang L, Gong W. Machine learning based adaptive optics for doughnut-shaped beam. OPTICS EXPRESS 2019; 27:16871-16881. [PMID: 31252906 DOI: 10.1364/oe.27.016871] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 05/20/2019] [Indexed: 06/09/2023]
Abstract
The doughnut-shaped beam has been widely applied in the field of super-resolution microscopic imaging, micro-nanostructure lithography, ultra-high-density storage, and laser trapping. However, how to maintain the doughnut-shaped focus inside the scattering medium becomes a challenge, due to the wavefront aberrations. Here we demonstrate a machine learning based adaptive optics method to recover the doughnut-shaped focus with high speed. In our method, the relationship between the distorted doughnut-shaped intensity point spread function and the coefficients of the first 15 Zernike modes for phase correction is established. Experimental results show that the wavefront aberration with 101,784 optical control elements can be predicted within ~17 ms even using a personal computer, and 97.5% correction accuracy can be achieved in 200 repeated tests. Besides, we successfully apply this method in the scanning microscopy theoretically. With a large number of optical control elements and fast operation speed, our method may pave the way for many important applications in bioimaging, such as deep tissue stimulated emission depletion (STED) microscopy.
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