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Tu Quyen LT, Tung BN, Thach PN, Tri NN, Trung NT. Characteristics of nonconventional hydrogen bonds and stability of dimers of chalcogenoaldehyde derivatives: a noticeable role of oxygen compared to other chalcogens. RSC Adv 2024; 14:14114-14125. [PMID: 38686288 PMCID: PMC11057360 DOI: 10.1039/d4ra01837k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Accepted: 04/17/2024] [Indexed: 05/02/2024] Open
Abstract
In this work, twenty-four stable dimers of RCHZ with R = H, F, Cl, Br, CH3 or NH2 and Z = O, S, Se or Te were determined. It was found that the stability of most dimers is primarily contributed by the electrostatic force, except for the dominant role of the induction term in those involving a Te atom, which has been rarely observed. Both electron-donating and -withdrawing groups in substituted formaldehyde cause an increase in the strength of nonconventional Csp2-H⋯Z hydrogen bonds, as well as the dimers, in which the electron donating effect plays a more crucial role. The strength of nonconventional hydrogen bonds decreases in the following order: Csp2-H⋯O ≫ Csp2-H⋯S > Csp2-H⋯Se > Csp2-H⋯Te. Remarkably, a highly significant role of the O atom compared to S, Se and Te in increasing the Csp2-H stretching frequency and strength of the nonconventional hydrogen bonds and dimers is found. A Csp2-H stretching frequency red-shift is observed in Csp2-H⋯S/Se/Te, while a blue-shift is obtained in Csp2-H⋯O. When Z changes from O to S to Se and to Te, the Csp2-H blue-shift tends to decrease and eventually turns to a red-shift, in agreement with the increasing order of the proton affinity at Z in the isolated monomer. The magnitude of the Csp2-H stretching frequency red-shift is larger for Csp2-H⋯Te than Csp2-H⋯S/Se, consistent with the rising trend of proton affinity at the Z site and the polarity of the Csp2-H bond in the substituted chalcogenoaldehydes. The Csp2-H blue-shifting of the Csp2-H⋯O hydrogen bonds is observed in all dimers regardless of the electron effect of the substituents. Following complexation, the electron-donating derivatives exhibit a stronger Csp2-H blue-shift compared to the electron-withdrawing ones. Notably, the stronger Csp2-H blue-shift turns out to involve a less polarized Csp2-H bond and a decrease in the occupation at the σ*(Csp2-H) antibonding orbital in the isolated monomer.
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Affiliation(s)
- Le Thi Tu Quyen
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
| | - Bui Nhat Tung
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
| | - Pham Ngoc Thach
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
- Faculty of Natural Sciences, Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
| | - Nguyen Ngoc Tri
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
- Faculty of Natural Sciences, Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
| | - Nguyen Tien Trung
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
- Faculty of Natural Sciences, Quy Nhon University 170 An Duong Vuong Street Quy Nhon City 590000 Vietnam
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DFT study on binding of single and double methane with aromatic hydrocarbons and graphene: stabilizing CH…HC interactions between two methane molecules. Struct Chem 2020. [DOI: 10.1007/s11224-020-01657-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Trung NT, Khanh PN, Carvalho AJP, Nguyen MT. Remarkable shifts of C sp2 -H and O-H stretching frequencies and stability of complexes of formic acid with formaldehydes and thioformaldehydes. J Comput Chem 2019; 40:1387-1400. [PMID: 30715728 DOI: 10.1002/jcc.25793] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2018] [Revised: 01/08/2019] [Accepted: 01/08/2019] [Indexed: 11/07/2022]
Abstract
Thirty-six stable complexes of formic acid with formaldehydes and thioformaldehydes were determined on the potential energy surface, in which the XCHO···HCOOH complexes are found to be more stable than the XCHS···HCOOH counterparts, with X = H, F, Cl, Br, CH3 , NH2 . All complexes are stabilized by hydrogen bonds, and their contribution to the total stabilization energy of the complexes increases in going from C-H···S to C-H···O to O-H···S and finally to O-H···O. Remarkably, a significant blueshift of Csp2 -H bond by 81-96 cm-1 in the Csp2 -H···O hydrogen bond has hardly ever been reported, and a considerable redshift of O-H stretching frequency by 206-544 cm-1 in the O-H···O/S hydrogen bonds is also predicted. The obtained results in our present work and previous literatures support that a distance contraction and a stretching frequency blueshift of C-H bond involving hydrogen bond depend mainly on its polarity and gas phase basicity of proton acceptor, besides the rearrangement of electron density due to complex formation. Markedly, we suggest the ratio of deprotonation enthalpy to proton affinity (R c ) as an indicator to prospect for classification of hydrogen bonds. The symmetry adapted perturbation theory results show a larger role of attractive electrostatic term in XO-n as compared to that in XS-n and the electrostatic interaction is overwhelming dispersion or induction counterparts in stabilizing XO-n and XS-n, with n = 1, 2, 3. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Nguyen Tien Trung
- Laboratory of Computational Chemistry and Modelling, and Department of Chemistry, Quy Nhon University, Quy Nhon, Vietnam
| | - Pham Ngoc Khanh
- Laboratory of Computational Chemistry and Modelling, and Department of Chemistry, Quy Nhon University, Quy Nhon, Vietnam
| | - Alfredo J Palace Carvalho
- Department of Chemistry, School of Sciences and Technology, and Évora Chemistry Center, IIFA, University of Évora, Évora, Portugal
| | - Minh Tho Nguyen
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
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Hayashi S, Sugibayashi Y, Nakanishi W. Behavior of interactions between hydrogen chalcogenides and an anthracene π-system elucidated by QTAIM dual functional analysis with QC calculations. RSC Adv 2017. [DOI: 10.1039/c7ra04224h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The nature of the interactions between chalcogenides and the anthracene p-system, EH2-*-p(C14H10), is predicted to be close to that of EH2-*-p(C10H8), although the partial structures around the central rings can be found in EH2-*-p(C6H6).
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Affiliation(s)
- Satoko Hayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Yuji Sugibayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Waro Nakanishi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
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Hayashi S, Sugibayashi Y, Nakanishi W. Quantum chemical calculations with the AIM approach applied to the π-interactions between hydrogen chalcogenides and naphthalene. RSC Adv 2016. [DOI: 10.1039/c6ra04738f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
The nature of π-interactions in (EH2)n–*–π(C10H8) (n = 1 and 2: E = O, S, Se and Te) is elucidated with QTAIM-DFA. They have the character of the vdW-nature of the pure-CS interactions, except for HHTe–*–π(C10H8), which seems stronger than others.
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Affiliation(s)
- Satoko Hayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Yuji Sugibayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Waro Nakanishi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
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Li J, Zhang RQ. Strong orbital deformation due to CH-π interaction in the benzene-methane complex. Phys Chem Chem Phys 2015; 17:29489-91. [PMID: 26498388 DOI: 10.1039/c5cp04684j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The orbital distribution and composition of the benzene-methane complex have been investigated systemically using ab initio calculations for the first time. Surprisingly, we find strong deformation in the HOMO-4 and LUMO+2 induced by CH-π interaction, extending the general view that nonbonding interaction does not cause orbital change of molecules.
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Affiliation(s)
- Jianfu Li
- Department of Physics and Materials Science, City University of Hong Kong, Hong Kong SAR, China.
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Paytakov G, Dinadayalane T, Leszczynski J. Toward Selection of Efficient Density Functionals for van der Waals Molecular Complexes: Comparative Study of C–H···π and N–H···π Interactions. J Phys Chem A 2015; 119:1190-200. [DOI: 10.1021/jp511450u] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Guvanchmyrat Paytakov
- Interdisciplinary Center for
Nanotoxicity, Department of Chemistry
and Biochemistry, Jackson State University, J. R. Lynch Street, Jackson, Mississippi 39217, United States
| | - Tandabany Dinadayalane
- Department
of Chemistry, Clark Atlanta University, 223 James P. Brawley Drive, S.W., Atlanta, Georgia 30314, United States
| | - Jerzy Leszczynski
- Interdisciplinary Center for
Nanotoxicity, Department of Chemistry
and Biochemistry, Jackson State University, J. R. Lynch Street, Jackson, Mississippi 39217, United States
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From clusters to liquid: what are the preferred ways for benzene and pyrrole to interact? Theor Chem Acc 2013. [DOI: 10.1007/s00214-013-1340-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Oliveira BGD. Structure, energy, vibrational spectrum, and Bader's analysis of π⋯H hydrogen bonds and H−δ⋯H+δdihydrogen bonds. Phys Chem Chem Phys 2013; 15:37-79. [DOI: 10.1039/c2cp41749a] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Zhou PP, Qiu WY, Jin NZ. Quantification of hyperconjugative effect on the proton donor X–H bond length changes in the red- and blueshifted hydrogen-bonded complexes. J Chem Phys 2012; 137:084311. [DOI: 10.1063/1.4748135] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Theoretical study of different substituent benzenes and benzene dimers blue-shifted hydrogen bonds. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2011.12.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Inagaki S, Murai H, Takeuchi T. Theory of electron localization and its application to blue-shifting hydrogen bonds. Phys Chem Chem Phys 2012; 14:2008-14. [DOI: 10.1039/c2cp23047j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zhou PP, Qiu WY. Red-Shifted Hydrogen Bonds and Blue-Shifted van der Waals Contact in the Standard Watson−Crick Adenine−Thymine Base Pair. J Phys Chem A 2009; 113:10306-20. [DOI: 10.1021/jp9035452] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
Affiliation(s)
- Pan-Pan Zhou
- State Key Laboratory of Applied Organic Chemistry, Department of Chemistry, Lanzhou University, 222 South Tianshui Road, Lanzhou, P. R. China
| | - Wen-Yuan Qiu
- State Key Laboratory of Applied Organic Chemistry, Department of Chemistry, Lanzhou University, 222 South Tianshui Road, Lanzhou, P. R. China
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Dinadayalane TC, Leszczynski J. In the pursuit of small "red shift" of C-H stretching vibrational frequency of C-H...pi interactions for benzene dimer: How to amend MP2 calculations to reproduce the experimental results. J Chem Phys 2009; 130:081101. [PMID: 19256586 DOI: 10.1063/1.3085815] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
For the bent T-shaped benzene dimer, the vibrational frequencies at the MP2/aug-cc-pVDZ level with counterpoise correction reproduce experimental results of the small "red shifts" of C-H stretching, while those without counterpoise correction yield considerable "blue shift." Counterpoise correction also affects the C-H bond distances of C-H...pi interactions as well as intermoiety distances.
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Affiliation(s)
- T C Dinadayalane
- Department of Chemistry, Interdisciplinary Center for Nanotoxicity, Jackson State University, Jackson, Mississippi 39217, USA
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Dinadayalane TC, Leszczynski J. Geometries and stabilities of various configurations of benzene dimer: details of novel V-shaped structure revealed. Struct Chem 2009. [DOI: 10.1007/s11224-009-9411-6] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Izquierdo M, Osuna S, Filippone S, Martín-Domenech A, Solà M, Martín N. H-Bond-Assisted Regioselective (cis-1) Intramolecular Nucleophilic Addition of the Hydroxyl Group to [60]Fullerene. J Org Chem 2009; 74:1480-7. [DOI: 10.1021/jo802152x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Marta Izquierdo
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, E-28040 Madrid, Spain, and Institut de Química Computacional and Departament de Química, Universidad de Girona, E-17071 Girona, Catalonia, Spain
| | - Sílvia Osuna
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, E-28040 Madrid, Spain, and Institut de Química Computacional and Departament de Química, Universidad de Girona, E-17071 Girona, Catalonia, Spain
| | - Salvatore Filippone
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, E-28040 Madrid, Spain, and Institut de Química Computacional and Departament de Química, Universidad de Girona, E-17071 Girona, Catalonia, Spain
| | - Angel Martín-Domenech
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, E-28040 Madrid, Spain, and Institut de Química Computacional and Departament de Química, Universidad de Girona, E-17071 Girona, Catalonia, Spain
| | - Miquel Solà
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, E-28040 Madrid, Spain, and Institut de Química Computacional and Departament de Química, Universidad de Girona, E-17071 Girona, Catalonia, Spain
| | - Nazario Martín
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, E-28040 Madrid, Spain, and Institut de Química Computacional and Departament de Química, Universidad de Girona, E-17071 Girona, Catalonia, Spain
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Brisdon AK, Flower KR, Pritchard RG. Raman spectrum of [Ru(CNBu t)(CO)(eta2-C6H4-2-CHO)(PPh3)2][BF4].2CDCl3 shows that the crystallographically determined bifurcated hydrogen-bonding interaction Cl3CD...F2BF2- is an example of a blue-shifting hydrogen bond. Inorg Chem 2007; 46:7189-92. [PMID: 17658879 DOI: 10.1021/ic701065w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Raman data suggest that a crystallographically determined Cl3CD...F2BF2- interaction in the solid-state structure of [Ru(CNBut)(CO)(eta2-C6H4-2-CHO)(PPh3)2][BF4].2CDCl3 is an example of a blue-shifting bifurcated hydrogen bond. The nu(C-D) band blue-shifts 5 cm-1 to 2269 cm-1 compared to 2264 cm-1 for CDCl3 in the gas phase and 20 cm-1 from frozen CDCl3 at 2249 cm-1. A conventional interpretation of these band shifts would suggest that the CCl2 fragment of DCCl3 is a stronger hydrogen-bond acceptor than the BF2 fragment of a BF4- group.
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Affiliation(s)
- Alan K Brisdon
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, U.K
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