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Desdion Q, Bessac F, Hoyau S. Atrazine Desorption Mechanism from an Hydrated Calcium Montmorillonite-A DFT Molecular Dynamics Study. Int J Mol Sci 2024; 25:1604. [PMID: 38338882 PMCID: PMC10855099 DOI: 10.3390/ijms25031604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/18/2024] [Accepted: 01/22/2024] [Indexed: 02/12/2024] Open
Abstract
Atrazine is one of the most widely used herbicide molecules in the triazine family. Despite its interdiction in the European Union in 2004, atrazine and its main degradation products remain among the most frequently found molecules in freshwater reservoirs in many European Union countries. Our study aims in obtaining insight into the desorption process of atrazine from the main soil absorbent material: clay. Constrained Molecular Dynamics simulations within the Density Functional Theory framework allow us to obtain a free energy desorption profile of atrazine from a Ca2+-montmorillonite surface. The results are interpreted in terms of atrazine inclination to the clay surface and moreover, in terms of hydration states of the cations present in the clay interlayer as well as the hydration state of the atrazine. The desorption mechanism is driven by atrazine alkyl groups and their sizes because of dispersion stabilizing effects. The highest barrier corresponds to the loss of the isopropyl interaction with the surface.
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Affiliation(s)
- Quentin Desdion
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, Université Paul Sabatier, Toulouse III, CNRS (UMR 5626), 118 Route de Narbonne, F-31062 Toulouse, France; (Q.D.); (S.H.)
- Ecole d’Ingénieurs de Purpan, Université de Toulouse, Toulouse INP, 75 Voie du TOEC, BP 57611, Cedex 03, F-31076 Toulouse, France
| | - Fabienne Bessac
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, Université Paul Sabatier, Toulouse III, CNRS (UMR 5626), 118 Route de Narbonne, F-31062 Toulouse, France; (Q.D.); (S.H.)
- Ecole d’Ingénieurs de Purpan, Université de Toulouse, Toulouse INP, 75 Voie du TOEC, BP 57611, Cedex 03, F-31076 Toulouse, France
| | - Sophie Hoyau
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, Université Paul Sabatier, Toulouse III, CNRS (UMR 5626), 118 Route de Narbonne, F-31062 Toulouse, France; (Q.D.); (S.H.)
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Cancade M, Thiebault T, Mignon P. Selective Adsorption of Organic Micro-Pollutants by Smectite Clays Revealed from Atomistic Simulations. Int J Mol Sci 2023; 24:14781. [PMID: 37834226 PMCID: PMC10572936 DOI: 10.3390/ijms241914781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 09/26/2023] [Accepted: 09/28/2023] [Indexed: 10/15/2023] Open
Abstract
In this study, atomistic simulations were carried out to study the difference in the adsorption process between two similar molecules, diazepam and oxazepam, on Na+-montmorillonite. Kinetic and XRD measurements showed a contrasting adsorption mechanism of these two molecules, differing only by the presence/absence of methyl and hydroxyl groups, with a larger adsorption amount and intercalation for the oxazepam. The structural characterization of these molecules was investigated through DFT calculations and showed the vicinity of hydroxyl and carbonyl groups for only the chair conformation of oxazepam compared to the boat conformation. Classical molecular dynamics simulations of diazepam and the two forms of oxazepam on the external surface of Na+-montmorillonite highlighted the better coordination of the oxazepam-chair conformation, compared to its boat counterpart and diazepam. This has been confirmed through DFT calculations, from which a coordination energy that is greater by 10 kcal·mol-1 is observed. This strongly suggests that the experimentally observed intercalation of oxazepam occurs only in the chair form because of the strong coordination with the Na+ cation present in the Na-Mt interlayer. Classical MD simulations of the intercalated oxazepam chair molecule in the Na-Mt interlayer allowed the evaluation of the interlayer spacing d001, which was in very good agreement with the experimental XRD measurement.
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Affiliation(s)
- Mathieu Cancade
- Institut Lumière Matière, UMR 5306, Université Claude Bernard Lyon 1, CNRS, Université de Lyon, 69622 Villeurbanne, France;
| | - Thomas Thiebault
- Milieux Environnementaux, Transferts et Interactions dans les Hydrosystèmes et les Sols, Sorbonne Université, CNRS, EPHE, PSL University, UMR 7619, 75005 Paris, France;
| | - Pierre Mignon
- Institut Lumière Matière, UMR 5306, Université Claude Bernard Lyon 1, CNRS, Université de Lyon, 69622 Villeurbanne, France;
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Lajmanovich RC, Attademo AM, Lener G, Cuzziol Boccioni AP, Peltzer PM, Martinuzzi CS, Demonte LD, Repetti MR. Glyphosate and glufosinate ammonium, herbicides commonly used on genetically modified crops, and their interaction with microplastics: Ecotoxicity in anuran tadpoles. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:150177. [PMID: 34520929 DOI: 10.1016/j.scitotenv.2021.150177] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 08/21/2021] [Accepted: 09/02/2021] [Indexed: 06/13/2023]
Abstract
The effects of glyphosate (GLY)-based and glufosinate ammonium (GA)-based herbicides (GBH and GABH, respectively) and polyethylene microplastic particles (PEMPs) on Scinax squalirostris tadpoles were assessed. Tadpoles were exposed to nominal concentrations of both herbicides (from 1.56 to 100 mg L-1) and PEMPs (60 mg L-1), either alone or in combination, and toxicity evaluated at 48 h. Acetylcholinesterase (AChE), carboxylesterase (CbE), and glutathione-S-transferase (GST) activities were analyzed at the three lowest concentrations (1.56, 3.12 and 6.25 mg L-1, survival rates >85%) of both herbicides alone and with PEMPs. Additionally, the thermochemistry of the interactions between the herbicides and polyethylene (PE) was analyzed by Density Functional Theory (DFT). The median-lethal concentration (LC50) was 43.53 mg L-1 for GBH, 38.56 mg L-1 for GBH + PEMPs, 7.69 for GABH, and 6.25 mg L-1 for GABH+PEMPs. The PEMP treatment increased GST but decreased CbE activity, whereas GBH and GABH treatments increased GST but decreased AChE activity. In general, the mixture of herbicides with PEMPs increased the effect observed in the individual treatments: the highest concentration of GBH + PEMPs increased GST activity, whereas GABH+PEMP treatments decreased both AChE and CbE activities. DFT analysis revealed spontaneous interactions between the herbicides and PE, leading to the formation of bonds at the herbicide-PE interface, significantly stronger for GA than for GLY. The experimental and theoretical findings of our study indicate that these interactions may lead to an increase in toxicity when pollutants are together, meaning potential environmental risk of these combinations, especially in the case of GA.
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Affiliation(s)
- Rafael C Lajmanovich
- Laboratorio de Ecotoxicología, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina; Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina.
| | - Andrés M Attademo
- Laboratorio de Ecotoxicología, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina; Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina
| | - Germán Lener
- Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina; Instituto de Investigaciones en Físico-Química de Córdoba-CONICET, Departamento de Química Teórica y Computacional, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Ana P Cuzziol Boccioni
- Laboratorio de Ecotoxicología, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina; Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina
| | - Paola M Peltzer
- Laboratorio de Ecotoxicología, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina; Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina
| | - Candela S Martinuzzi
- Laboratorio de Ecotoxicología, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina; Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina
| | - Luisina D Demonte
- Consejo Nacional de Investigaciones Científicas Técnicas (CONICET), Buenos Aires, Argentina; Programa de Investigación y Análisis de Residuos y Contaminantes Químicos, Facultad de Ingeniería Química, Universidad Nacional del Litoral, Santa Fe, Argentina
| | - María R Repetti
- Programa de Investigación y Análisis de Residuos y Contaminantes Químicos, Facultad de Ingeniería Química, Universidad Nacional del Litoral, Santa Fe, Argentina
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Stability of Atrazine–Smectite Intercalates: Density Functional Theory and Experimental Study. MINERALS 2021. [DOI: 10.3390/min11060554] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Atrazine (A) is one of the most applied herbicides and has a negative impact on the environment and health. Density functional theory (DFT) and experimental methods were used in the study of the immobilization of atrazine in two smectites, montmorillonite (Mt) and beidellite (Bd), as well as in their organically modified structures. Four systems were examined: A-Mt and A-Bd, as well as the structures modified by tetramethylphosphonium cation (TMP), A-TMP-Mt and A-TMP-Bd. The calculations revealed a flat arrangement of the atrazine in the interlayer space of both smectites with higher stability of beidellite structures. The presence of the TMP cation increased the fixation of atrazine in both organically modified smectites. The calculated vibrational spectra allowed a detailed analysis of the overlapping bands observed in the experimental FTIR spectra and their correct assignment. Further, selected FTIR bands unambiguously assigned to atrazine and both smectites served for the estimation of the adsorbed amount of atrazine. It was shown that the adsorption capacity of both TMP-modified smectites did not increase in comparison to the adsorption capacity of unmodified smectite samples.
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DFT Simulation of the Water Molecule Interaction with the (00l) Surface of Montmorillonite. MINERALS 2021. [DOI: 10.3390/min11050501] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Montmorillonite is one of the principal mineralogical phases in clay minerals, where its interaction with water and other molecules represents one of the most important aspects and properties for basic science and specific applications. In fact, montmorillonite has many uses in various scientific and technological fields, ranging from environmental remediation to ceramics, food science, and construction/building materials. Several efforts have characterized its structure and physico-chemical properties, especially at the Tetrahedral-Octahedral-Tetrahedral TOT surface. For this purpose, in this work, the authors investigated the structural and electrostatic potential features of the (00l) surface of montmorillonite and the water adsorption process by first principle methods (density functional theory, DFT), considering both static and molecular dynamics approaches. The provided data further extend the knowledge of the modulation of the water molecule adsorption with this important clay mineral.
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