1
|
Berio F, Bayle Y, Baum D, Goudemand N, Debiais-Thibaud M. Hide and seek shark teeth in Random Forests: machine learning applied to Scyliorhinus canicula populations. PeerJ 2022; 10:e13575. [PMID: 35811817 PMCID: PMC9261926 DOI: 10.7717/peerj.13575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 05/22/2022] [Indexed: 01/17/2023] Open
Abstract
Shark populations that are distributed alongside a latitudinal gradient often display body size differences at sexual maturity and vicariance patterns related to their number of tooth files. Previous works have demonstrated that Scyliorhinus canicula populations differ between the northeastern Atlantic Ocean and the Mediterranean Sea based on biological features and genetic analysis. In this study, we sample more than 3,000 teeth from 56 S. canicula specimens caught incidentally off Roscoff and Banyuls-sur-Mer. We investigate population differences based on tooth shape and form by using two approaches. Classification results show that the classical geometric morphometric framework is outperformed by an original Random Forests-based framework. Visually, both S. canicula populations share similar ontogenetic trends and timing of gynandric heterodonty emergence but the Atlantic population has bigger, blunter teeth, and less numerous accessory cusps than the Mediterranean population. According to the models, the populations are best differentiated based on their lateral tooth edges, which bear accessory cusps, and the tooth centroid sizes significantly improve classification performances. The differences observed are discussed in light of dietary and behavioural habits of the populations considered. The method proposed in this study could be further adapted to complement DNA analyses to identify shark species or populations based on tooth morphologies. This process would be of particular interest for fisheries management and identification of shark fossils.
Collapse
Affiliation(s)
- Fidji Berio
- Institut de Génomique Fonctionnelle de Lyon, École Normale Supérieure de Lyon, CNRS, UCBL, Lyon, France
- Institut des Sciences de l’Évolution de Montpellier, CNRS, IRD, EPHE, Université de Montpellier, Montpellier, France
| | - Yann Bayle
- Université de Bordeaux, Bordeaux INP, CNRS, LaBRI, Talence, France
| | - Daniel Baum
- Department of Visual and Data-Centric Computing, Zuse Institute Berlin, Berlin, Germany
| | - Nicolas Goudemand
- Institut de Génomique Fonctionnelle de Lyon, École Normale Supérieure de Lyon, CNRS, UCBL, Lyon, France
| | - Mélanie Debiais-Thibaud
- Institut des Sciences de l’Évolution de Montpellier, CNRS, IRD, EPHE, Université de Montpellier, Montpellier, France
| |
Collapse
|
2
|
Türtscher J, Jambura PL, López‐Romero FA, Kindlimann R, Sato K, Tomita T, Kriwet J. Heterodonty and ontogenetic shift dynamics in the dentition of the tiger shark
Galeocerdo cuvier
(Chondrichthyes, Galeocerdidae). J Anat 2022; 241:372-392. [PMID: 35428996 PMCID: PMC9296035 DOI: 10.1111/joa.13668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 03/28/2022] [Accepted: 03/29/2022] [Indexed: 11/27/2022] Open
Abstract
The lifelong tooth replacement in elasmobranch fishes (sharks, rays and skates) has led to the assemblage of a great number of teeth from fossil and extant species, rendering tooth morphology an important character for taxonomic descriptions, analysing phylogenetic interrelationships and deciphering their evolutionary history (e.g. origination, divergence, extinction). Heterodonty (exhibition of different tooth morphologies) occurs in most elasmobranch species and has proven to be one of the main challenges for these analyses. Although numerous shark species are discovered and described every year, detailed descriptions of tooth morphologies and heterodonty patterns are lacking or are only insufficiently known for most species. Here, we use landmark‐based 2D geometric morphometrics on teeth of the tiger shark Galeocerdo cuvier to analyse and describe dental heterodonties among four different ontogenetic stages ranging from embryo to adult. Our results reveal rather gradual and subtle ontogenetic shape changes, mostly characterized by increasing size and complexity of the teeth. We furthermore provide the first comprehensive description of embryonic dental morphologies in tiger sharks. Also, tooth shapes of tiger sharks in different ontogenetic stages are re‐assessed and depicted in detail. Finally, multiple cases of tooth file reversal are described. This study, therefore, contributes to our knowledge of dental traits across ontogeny in the extant tiger shark G. cuvier and provides a baseline for further morphological and genetic studies on the dental variation in sharks. Therefore, it has the potential to assist elucidating the underlying developmental and evolutionary processes behind the vast dental diversity observed in elasmobranch fishes today and in deep time. Using 2D geometric morphometrics, we examined the tooth morphology and heterodonty patterns across ontogeny in extant tiger sharks. Examining tiger sharks in different ontogenetic stages allowed us to provide detailed descriptions of intraspecific tooth variations and to confirm a weak ontogenetic heterodonty in this species.
Collapse
Affiliation(s)
- Julia Türtscher
- Faculty of Earth Sciences, Geography and Astronomy Department of Palaeontology University of Vienna Vienna Austria
- Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna Vienna Austria
| | - Patrick L. Jambura
- Faculty of Earth Sciences, Geography and Astronomy Department of Palaeontology University of Vienna Vienna Austria
- Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna Vienna Austria
| | - Faviel A. López‐Romero
- Faculty of Earth Sciences, Geography and Astronomy Department of Palaeontology University of Vienna Vienna Austria
- Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna Vienna Austria
| | - René Kindlimann
- Haimuseum und Sammlung R. Kindlimann Aathal‐Seegräben Switzerland
| | - Keiichi Sato
- Okinawa Churashima Research Center Okinawa Churashima Foundation Motobu‐cho Okinawa Japan
- Okinawa Churaumi Aquarium Okinawa Churashima Foundation Motobu‐cho Okinawa Japan
| | - Taketeru Tomita
- Okinawa Churashima Research Center Okinawa Churashima Foundation Motobu‐cho Okinawa Japan
- Okinawa Churaumi Aquarium Okinawa Churashima Foundation Motobu‐cho Okinawa Japan
| | - Jürgen Kriwet
- Faculty of Earth Sciences, Geography and Astronomy Department of Palaeontology University of Vienna Vienna Austria
- Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna Vienna Austria
| |
Collapse
|
3
|
Bazzi M, Campione NE, Ahlberg PE, Blom H, Kear BP. Tooth morphology elucidates shark evolution across the end-Cretaceous mass extinction. PLoS Biol 2021; 19:e3001108. [PMID: 34375335 PMCID: PMC8354442 DOI: 10.1371/journal.pbio.3001108] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 07/05/2021] [Indexed: 02/05/2023] Open
Abstract
Sharks (Selachimorpha) are iconic marine predators that have survived multiple mass extinctions over geologic time. Their prolific fossil record is represented mainly by isolated shed teeth, which provide the basis for reconstructing deep time diversity changes affecting different selachimorph clades. By contrast, corresponding shifts in shark ecology, as measured through morphological disparity, have received comparatively limited analytical attention. Here, we use a geometric morphometric approach to comprehensively examine tooth morphologies in multiple shark lineages traversing the catastrophic end-Cretaceous mass extinction-this event terminated the Mesozoic Era 66 million years ago. Our results show that selachimorphs maintained virtually static levels of dental disparity in most of their constituent clades across the Cretaceous-Paleogene interval. Nevertheless, selective extinctions did impact apex predator species characterized by triangular blade-like teeth. This is particularly evident among lamniforms, which included the dominant Cretaceous anacoracids. Conversely, other groups, such as carcharhiniforms and orectolobiforms, experienced disparity modifications, while heterodontiforms, hexanchiforms, squaliforms, squatiniforms, and †synechodontiforms were not overtly affected. Finally, while some lamniform lineages disappeared, others underwent postextinction disparity increases, especially odontaspidids, which are typified by narrow-cusped teeth adapted for feeding on fishes. Notably, this increase coincides with the early Paleogene radiation of teleosts as a possible prey source, and the geographic relocation of disparity sampling "hotspots," perhaps indicating a regionally disjunct extinction recovery. Ultimately, our study reveals a complex morphological response to the end-Cretaceous mass extinction and highlights an event that influenced the evolution of modern sharks.
Collapse
Affiliation(s)
- Mohamad Bazzi
- Subdepartment of Evolution and Development, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
| | - Nicolás E. Campione
- Palaeoscience Research Centre, School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia
| | - Per E. Ahlberg
- Subdepartment of Evolution and Development, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
| | - Henning Blom
- Subdepartment of Evolution and Development, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
| | | |
Collapse
|
4
|
Biomechanical insights into the dentition of megatooth sharks (Lamniformes: Otodontidae). Sci Rep 2021; 11:1232. [PMID: 33441828 PMCID: PMC7806677 DOI: 10.1038/s41598-020-80323-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 12/17/2020] [Indexed: 01/29/2023] Open
Abstract
The evolution of gigantism in extinct otodontid sharks was paralleled by a series of drastic modifications in their dentition including widening of the crowns, loss of lateral cusplets, and acquisition of serrated cutting edges. These traits have generally been interpreted as key functional features that enabled the transition from piscivory to more energetic diets based on marine mammals, ultimately leading to the evolution of titanic body sizes in the most recent forms (including the emblematic Otodus megalodon). To investigate this hypothesis, we evaluate the biomechanics of the anterior, lateral, and posterior teeth of five otodontid species under different loading conditions by using two-dimensional finite element analysis. Stress distribution patterns are remarkably similar among all models under puncture and draw (i.e., when subjected to vertical and lateral forces, respectively). Contrary to expectation, higher average stress values are detected under both loading scenarios in more recent species. Altogether, this suggests little correlation between tooth morphology and key aspects of biomechanical behaviour in otodontids, making it difficult to frame the morphological trend of their dentitions within an adaptive scenario. We propose that this pattern most likely emerged as a non-functional by-product of heterochronic processes driven by selection towards larger body sizes.
Collapse
|
5
|
Straube N, Pollerspöck J. Intraspecific dental variations in the deep-sea shark Etmopterus spinax and their significance in the fossil record. ZOOMORPHOLOGY 2020. [DOI: 10.1007/s00435-020-00503-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
AbstractAn important character on several taxonomic levels for shark identification is the tooth morphology. Sharks show a variety of highly specialized dentitions reflecting adaptations to their feeding habits. Intraspecific variation of tooth morphology such as sexual or ontogenetic dimorphism is poorly known in many species, even though tooth morphology plays a decisive role in the characterization of the fossil record of sharks, which comprises mostly fossil teeth. Here we analyzed the dentition of 40 jaws of the Velvet Belly Lantern Shark Etmopterus spinax and identified ontogenetic and sexual dimorphic characters such as total number of teeth, number of upper teeth, cusplet numbers in upper jaw teeth and width of lower jaw teeth. Dimorphic characters may reduce intraspecific competition for food, as E. spinax segregates by sex and size and may allow for identifying the male sex. The lower jaw tooth height, a sexually non-dimorphic character, was used to re-calculate the total length of specimens, which represents the first such approach for a squaliform shark. Results derived from the extant E. spinax are subsequently applied to fossil Etmopterus sp. teeth (Miocene) to gain individual information such as sex or size, but also characterize the extinct population from the excavation site by a size distribution profile in comparison to data from extant populations. This approach indicates the presence of multiple ontogenetic stages in the extinct population.
Collapse
|
6
|
Meredith Smith M, Underwood C, Clark B, Kriwet J, Johanson Z. Development and evolution of tooth renewal in neoselachian sharks as a model for transformation in chondrichthyan dentitions. J Anat 2018; 232:891-907. [PMID: 29504120 DOI: 10.1111/joa.12796] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/25/2018] [Indexed: 12/01/2022] Open
Abstract
A defining feature of dentitions in modern sharks and rays is the regulated pattern order that generates multiple replacement teeth. These are arranged in labio-lingual files of replacement teeth that form in sequential time order both along the jaw and within successively initiated teeth in a deep dental lamina. Two distinct adult dentitions have been described: alternate, in which timing of new teeth alternates between two adjacent files, each erupting separately, and the other arranged as single files, where teeth of each file are timed to erupt together, in some taxa facilitating similarly timed teeth to join to form a cutting blade. Both are dependent on spatiotemporally regulated formation of new teeth. The adult Angel shark Squatina (Squalomorphii) exemplifies a single file dentition, but we obtained new data on the developmental order of teeth in the files of Squatina embryos, showing alternate timing of tooth initiation. This was based on micro-CT scans revealing that the earliest mineralised teeth at the jaw margin and their replacements in file pairs (odd and even jaw positions) alternate in their initiation timing. Along with Squatina, new observations from other squalomorphs such as Hexanchus and Chlamydoselachus, together with representatives of the sister group Galeomorphii, have established that the alternate tooth pattern (initiation time and replacement order) characterises the embryonic dentition of extant sharks; however, this can change in adults. These character states were plotted onto a recent phylogeny, demonstrating that the Squalomorphii show considerable plasticity of dental development. We propose a developmental-evolutionary model to allow change from the alternate to a single file alignment of replacement teeth. This establishes new dental morphologies in adult sharks from inherited alternate order.
Collapse
Affiliation(s)
- Moya Meredith Smith
- Tissue Engineering and Biophotonics, Dental Institute, King's College, London, UK.,Department of Earth Sciences, Natural History Museum, London, UK
| | - Charlie Underwood
- Department of Earth Sciences, Natural History Museum, London, UK.,Department of Earth and Planetary Sciences, Birkbeck, University of London, London, UK
| | - Brett Clark
- Department of Earth Sciences, Natural History Museum, London, UK
| | - Jürgen Kriwet
- Department of Palaeontology, University of Vienna, Vienna, Austria
| | - Zerina Johanson
- Department of Earth Sciences, Natural History Museum, London, UK
| |
Collapse
|