Structure and function of skin in the pelagic sea snake, Hydrophis platurus

New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae)

BACKGROUND

Sea snakes underwent a complete transition from land to sea within the last ~ 15 million years, yet they remain a conspicuous gap in molecular studies of marine adaptation in vertebrates.

RESULTS

Here, we generate four new annotated sea snake genomes, three of these at chromosome-scale (Hydrophis major, H. ornatus and H. curtus), and perform detailed comparative genomic analyses of sea snakes and their closest terrestrial relatives. Phylogenomic analyses highlight the possibility of near-simultaneous speciation at the root of Hydrophis, and synteny maps show intra-chromosomal variations that will be important targets for future adaptation and speciation genomic studies of this system. We then used a strict screen for positive selection in sea snakes (against a background of seven terrestrial snake genomes) to identify genes over-represented in hypoxia adaptation, sensory perception, immune response and morphological development.

CONCLUSIONS

We provide the best reference genomes currently available for the prolific and medically important elapid snake radiation. Our analyses highlight the phylogenetic complexity and conserved genome structure within Hydrophis. Positively selected marine-associated genes provide promising candidates for future, functional studies linking genetic signatures to the marine phenotypes of sea snakes and other vertebrates.

The life aquatic: an association between habitat type and skin thickness in snakes

An aquatic animal faces challenges not encountered by its terrestrial counterparts, promoting adaptive responses in multiple traits. For example, a thicker dermis might protect snakes when they are pushed against sharp objects by water currents, and might enable a snake to shed fouling organisms attached to its skin. We thus predicted that marine snakes should have thicker skin than terrestrial species, and that smaller sea snakes should have relatively thicker skin (because absolute, not relative, thickness determines vulnerability to fouling). Measurements of 192 snakes of 44 species supported those predictions. Many (but not all) sea snakes have skins 50% thicker than those of terrestrial and amphibious snake species, representing multiple independent evolutionary origins of thicker skin (in acrochordids, Laticauda sea kraits and both main clades of hydrophiine sea snakes). Marine snakes showed different allometries of skin thickness compared with their terrestrial counterparts; larger snakes had thicker skin within and among species of amphibious and terrestrial snakes, but larger aquatic snake species had thinner skin compared with smaller taxa. Interspecific variation in skin thickness was primarily due to increased collagen in the deep dermis, a physical barrier well suited to protecting against physical injury and to resisting penetration by epibionts.

Novel vascular plexus in the head of a sea snake (Elapidae, Hydrophiinae) revealed by high-resolution computed tomography and histology

Novel phenotypes are often linked to major ecological transitions during evolution. Here, we describe for the first time an unusual network of large blood vessels in the head of the sea snake Hydrophis cyanocinctus. MicroCT imaging and histology reveal an intricate modified cephalic vascular network (MCVN) that underlies a broad area of skin between the snout and the roof of the head. It is mostly composed of large veins and sinuses and converges posterodorsally into a large vein (sometimes paired) that penetrates the skull through the parietal bone. Endocranially, this blood vessel leads into the dorsal cerebral sinus, and from there, a pair of large veins depart ventrally to enter the brain. We compare the condition observed in H. cyanocinctus with that of other elapids and discuss the possible functions of this unusual vascular network. Sea snakes have low oxygen partial pressure in their arterial blood that facilitates cutaneous respiration, potentially limiting the availability of oxygen to the brain. We conclude that this novel vascular structure draining directly to the brain is a further elaboration of the sea snakes' cutaneous respiratory anatomy, the most likely function of which is to provide the brain with an additional supply of oxygen.