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Maia PP, Zin LC, Silva CF, Nascimento CS. Atenolol-imprinted polymer: a DFT study. J Mol Model 2022; 28:177. [PMID: 35654919 DOI: 10.1007/s00894-022-05171-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 05/23/2022] [Indexed: 11/30/2022]
Abstract
The purpose of this work was to investigate, via DFT calculations, the molecularly imprinted polymer (MIP) for atenolol (ATL) β-blocker evaluating distinct functional monomers (FMs), solvents, and cross-linker agents (CLAs). As the main result, we could determine from structural and thermodynamic data the best MIP synthesis protocol as being: p-vinyl benzoic acid (APV) as FM, toluene as solvent, and pentaerythritol triacrylate (PETRA) as CLA. We believe this rational design can be very useful for experimentalists in an attempt to perform an efficient synthesis of a MIP for this important β-blocker drug.
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Affiliation(s)
- Pollyanna P Maia
- LQTC: Laboratório de Química Teórica E Computacional, Departamento de Ciências Naturais (DCNAT), Universidade Federal de São João Del-Rei (UFSJ), Campus Dom Bosco, Praça Dom Helvécio 74São João Del Rei, Fábricas, MG, 36301-160, Brazil
| | - Lilian C Zin
- LQTC: Laboratório de Química Teórica E Computacional, Departamento de Ciências Naturais (DCNAT), Universidade Federal de São João Del-Rei (UFSJ), Campus Dom Bosco, Praça Dom Helvécio 74São João Del Rei, Fábricas, MG, 36301-160, Brazil
| | - Camilla F Silva
- LQTC: Laboratório de Química Teórica E Computacional, Departamento de Ciências Naturais (DCNAT), Universidade Federal de São João Del-Rei (UFSJ), Campus Dom Bosco, Praça Dom Helvécio 74São João Del Rei, Fábricas, MG, 36301-160, Brazil
| | - Clebio S Nascimento
- LQTC: Laboratório de Química Teórica E Computacional, Departamento de Ciências Naturais (DCNAT), Universidade Federal de São João Del-Rei (UFSJ), Campus Dom Bosco, Praça Dom Helvécio 74São João Del Rei, Fábricas, MG, 36301-160, Brazil.
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Silva CF, Menezes LF, Pereira AC, Nascimento CS. Molecularly Imprinted Polymer (MIP) for thiamethoxam: A theoretical and experimental study. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.129980] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Beltran-Villegas DJ, Wessels MG, Lee JY, Song Y, Wooley KL, Pochan DJ, Jayaraman A. Computational Reverse-Engineering Analysis for Scattering Experiments on Amphiphilic Block Polymer Solutions. J Am Chem Soc 2019; 141:14916-14930. [DOI: 10.1021/jacs.9b08028] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Daniel J. Beltran-Villegas
- Department of Chemical and Biomolecular Engineering, University of Delaware, 150 Academy Street, Colburn Laboratory, Newark, Delaware 19716, United States
| | - Michiel G. Wessels
- Department of Chemical and Biomolecular Engineering, University of Delaware, 150 Academy Street, Colburn Laboratory, Newark, Delaware 19716, United States
| | - Jee Young Lee
- Department of Materials Science and Engineering, University of Delaware, 201 DuPont Hall, Newark, Delaware 19716, United States
| | - Yue Song
- Departments of Chemistry, Chemical Engineering, and Materials Science & Engineering, Texas A&M University, College Station, Texas 77842, United States
| | - Karen L. Wooley
- Departments of Chemistry, Chemical Engineering, and Materials Science & Engineering, Texas A&M University, College Station, Texas 77842, United States
| | - Darrin J. Pochan
- Department of Materials Science and Engineering, University of Delaware, 201 DuPont Hall, Newark, Delaware 19716, United States
| | - Arthi Jayaraman
- Department of Chemical and Biomolecular Engineering, University of Delaware, 150 Academy Street, Colburn Laboratory, Newark, Delaware 19716, United States
- Department of Materials Science and Engineering, University of Delaware, 201 DuPont Hall, Newark, Delaware 19716, United States
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Silva CF, Borges KB, Nascimento CS. Computational study on acetamiprid-molecular imprinted polymer. J Mol Model 2019; 25:104. [PMID: 30923961 DOI: 10.1007/s00894-019-3990-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Accepted: 03/13/2019] [Indexed: 12/27/2022]
Abstract
In the present work we investigate, through DFT calculations, the mechanism of formation of a molecular imprinted polymer for the acetamiprid (ACT) insecticide, using four different functional monomers, four molar ratios attempts, and considering eight distinct solvents. As the main result we obtain the following theoretical protocol for the MIP synthesis: methacrylic acid (MMA) as functional monomer, 1:4 M ratio, i.e., one ACT to four MMAs, and chloroform as solvent. This DFT calculated condition shows more favorable energies for the formed complexes. We consider this work quite relevant since it can be used by experimentalists in order to reach an efficient MIP synthesis for ACT, avoiding wasted time and laboratory resources. Graphical abstract Best MIP Synthesis Protocol for Acetamiprid.
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Affiliation(s)
- Camilla F Silva
- Departamento de Ciências Naturais, Universidade Federal de São João del-Rei, Campus Dom Bosco, Praça Dom Helvécio 74, Fábricas, São João del-Rei, Minas Gerais, 36301-160, Brazil
| | - Keyller B Borges
- Departamento de Ciências Naturais, Universidade Federal de São João del-Rei, Campus Dom Bosco, Praça Dom Helvécio 74, Fábricas, São João del-Rei, Minas Gerais, 36301-160, Brazil
| | - Clebio S Nascimento
- Departamento de Ciências Naturais, Universidade Federal de São João del-Rei, Campus Dom Bosco, Praça Dom Helvécio 74, Fábricas, São João del-Rei, Minas Gerais, 36301-160, Brazil.
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Pereira TF, da Silva AT, Borges KB, Nascimento CS. Carvedilol-Imprinted Polymer: Rational design and selectivity studies. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.09.043] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Zadok I, Srebnik S. Coarse-Grained Simulation of Protein-Imprinted Hydrogels. J Phys Chem B 2018; 122:7091-7101. [DOI: 10.1021/acs.jpcb.8b03774] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Israel Zadok
- Department of Chemical Engineering, Technion—Israel Institute of Technology, Haifa 32000, Israel
| | - Simcha Srebnik
- Department of Chemical Engineering, Technion—Israel Institute of Technology, Haifa 32000, Israel
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Yankelov R, Yungerman I, Srebnik S. The selectivity of protein-imprinted gels and its relation to protein properties: A computer simulation study. J Mol Recognit 2017; 30. [DOI: 10.1002/jmr.2607] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 11/27/2016] [Accepted: 12/02/2016] [Indexed: 12/30/2022]
Affiliation(s)
- Rami Yankelov
- Department of Chemical Engineering; Technion - Israel Institute of Technology; Haifa Israel 32000
| | - Irena Yungerman
- Department of Chemical Engineering; Technion - Israel Institute of Technology; Haifa Israel 32000
| | - Simcha Srebnik
- Department of Chemical Engineering; Technion - Israel Institute of Technology; Haifa Israel 32000
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Theoretical investigation on functional monomer and solvent selection for molecular imprinting of tramadol. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2015.12.061] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Curk T, Dobnikar J, Frenkel D. Rational design of molecularly imprinted polymers. SOFT MATTER 2016; 12:35-44. [PMID: 26452006 DOI: 10.1039/c5sm02144h] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Molecular imprinting is the process whereby a polymer matrix is cross-linked in the presence of molecules with surface sites that can bind selectively to certain ligands on the polymer. The cross-linking process endows the polymer matrix with a chemical 'memory', such that the target molecules can subsequently be recognized by the matrix. We present a simple model that accounts for the key features of this molecular recognition. Using a combination of analytical calculations and Monte Carlo simulations, we show that the model can account for the binding of rigid particles to an imprinted polymer matrix with valence-limited interactions. We show how the binding multivalency and the polymer material properties affect the efficiency and selectivity of molecular imprinting. Our calculations allow us to formulate design criteria for optimal molecular imprinting.
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Affiliation(s)
- Tine Curk
- International Research Center for Soft Matter, Beijing University of Chemical Technology, Beijing, China. and Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Jure Dobnikar
- International Research Center for Soft Matter, Beijing University of Chemical Technology, Beijing, China.
| | - Daan Frenkel
- Department of Chemistry, University of Cambridge, Cambridge, UK
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Design and development of molecularly imprinted polymers for the selective extraction of deltamethrin in olive oil: An integrated computational-assisted approach. J Chromatogr A 2015. [DOI: 10.1016/j.chroma.2015.07.025] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Maouche N, Ktari N, Bakas I, Fourati N, Zerrouki C, Seydou M, Maurel F, Chehimi MM. A surface acoustic wave sensor functionalized with a polypyrrole molecularly imprinted polymer for selective dopamine detection. J Mol Recognit 2015; 28:667-78. [DOI: 10.1002/jmr.2482] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Revised: 04/20/2015] [Accepted: 04/28/2015] [Indexed: 01/03/2023]
Affiliation(s)
- Naima Maouche
- Laboratoire d'Electrochimie et Matériaux; Université Sétif -1; 19000 Algeria
| | - Nadia Ktari
- Laboratoire Méthodes et Techniques d'Analyse; Institut National de Recherche et d'Analyse Physico-chimique, BiotechPole Sidi-Thabet; 2020 Ariana Tunisia
| | - Idriss Bakas
- Université Paris Diderot, Sorbonne Cité; ITODYS, UMR 7086 CNRS; 15 rue Jean Antoine de Baïf 75205 Paris Cedex13 France
| | - Najla Fourati
- SATIE, UMR 8029, CNRS, ENS-Cachan; Cnam; 292 rue Saint Martin 75003 Paris France
| | - Chouki Zerrouki
- SATIE, UMR 8029, CNRS, ENS-Cachan; Cnam; 292 rue Saint Martin 75003 Paris France
| | - Mahamadou Seydou
- Université Paris Diderot, Sorbonne Cité; ITODYS, UMR 7086 CNRS; 15 rue Jean Antoine de Baïf 75205 Paris Cedex13 France
| | - François Maurel
- Université Paris Diderot, Sorbonne Cité; ITODYS, UMR 7086 CNRS; 15 rue Jean Antoine de Baïf 75205 Paris Cedex13 France
| | - Mohammed Mehdi Chehimi
- Université Paris Diderot, Sorbonne Cité; ITODYS, UMR 7086 CNRS; 15 rue Jean Antoine de Baïf 75205 Paris Cedex13 France
- Université Paris Est, ICMPE, SPC, PoPI team, UPEC, 2-8 rue Henri Dunant; 94320 Thiais France
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Schauperl M, Lewis DW. Probing the Structural and Binding Mechanism Heterogeneity of Molecularly Imprinted Polymers. J Phys Chem B 2015; 119:563-71. [DOI: 10.1021/jp506157x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Michael Schauperl
- Department
of Chemistry, University College London, 20 Gordon St, London WC1H 0AJ, United Kingdom
| | - Dewi W. Lewis
- Department
of Chemistry, University College London, 20 Gordon St, London WC1H 0AJ, United Kingdom
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Characterization of the Binding Properties of Molecularly Imprinted Polymers. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2015; 150:51-93. [PMID: 25796622 DOI: 10.1007/10_2015_316] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The defining characteristic of the binding sites of any particular molecularly imprinted material is heterogeneity: that is, they are not all identical. Nonetheless, it is useful to study their fundamental binding properties, and to obtain average properties. In particular, it has been instructive to compare the binding properties of imprinted and non-imprinted materials. This chapter begins by considering the origins of this site heterogeneity. Next, the properties of interest of imprinted binding sites are described in brief: affinity, selectivity, and kinetics. The binding/adsorption isotherm, the graph of concentration of analyte bound to a MIP versus concentration of free analyte at equilibrium, over a range of total concentrations, is described in some detail. Following this, the techniques for studying the imprinted sites are described (batch-binding assays, radioligand binding assays, zonal chromatography, frontal chromatography, calorimetry, and others). Thereafter, the parameters that influence affinity, selectivity and kinetics are discussed (solvent, modifiers of organic solvents, pH of aqueous solvents, temperature). Finally, mathematical attempts to fit the adsorption isotherms for imprinted materials, so as to obtain information about the range of binding affinities characterizing the imprinted sites, are summarized.
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Whitcombe MJ, Kirsch N, Nicholls IA. Molecular imprinting science and technology: a survey of the literature for the years 2004-2011. J Mol Recognit 2014; 27:297-401. [PMID: 24700625 DOI: 10.1002/jmr.2347] [Citation(s) in RCA: 275] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Revised: 10/28/2013] [Accepted: 12/01/2013] [Indexed: 12/11/2022]
Abstract
Herein, we present a survey of the literature covering the development of molecular imprinting science and technology over the years 2004-2011. In total, 3779 references to the original papers, reviews, edited volumes and monographs from this period are included, along with recently identified uncited materials from prior to 2004, which were omitted in the first instalment of this series covering the years 1930-2003. In the presentation of the assembled references, a section presenting reviews and monographs covering the area is followed by sections describing fundamental aspects of molecular imprinting including the development of novel polymer formats. Thereafter, literature describing efforts to apply these polymeric materials to a range of application areas is presented. Current trends and areas of rapid development are discussed.
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Liu X, Zong HY, Huang YP, Liu ZS. Liquid crystal-based molecularly imprinted nanoparticles with low crosslinking for capillary electrochromatography. J Chromatogr A 2013; 1309:84-9. [DOI: 10.1016/j.chroma.2013.08.024] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Revised: 08/05/2013] [Accepted: 08/06/2013] [Indexed: 10/26/2022]
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Chen K, Liu M, Zhao G, Shi H, Fan L, Zhao S. Fabrication of a novel and simple microcystin-LR photoelectrochemical sensor with high sensitivity and selectivity. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012; 46:11955-11961. [PMID: 23030666 DOI: 10.1021/es302327w] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Microcystin-LR (MC-LR), an inert electrochemical species, is difficult to be detected by a simple and direct electrochemical method. In the present work, a novel photoelectrochemical sensor is developed on highly ordered and vertically aligned TiO(2) nanotubes (TiO(2) NTs) with convenient surface modification of molecularly imprinted polymer (MIP) (denoted as MIP@TiO(2) NTs) for highly sensitive and selective determination of MC-LR in solutions. Molecularly imprinted polypyrrole (PPy) of MC-LR is chosen as the recognition element. The designed MIP@TiO(2) NTs photoelectrochemical sensor presents excellent applicability in MC-LR determination, with linear range from 0.5 to 100 μg L(-1) and limit of detection of 0.1 μg L(-1). Moreover, the sensor exhibits outstanding selectivity while used in coexisting systems containing 2,4-dichorophenoxyacetic acid, atrazine, paraquat, or monosultap with high concentration, 100 times that of MC-LR. The sensor presents good photoelectric conversion efficiency and detection sensitivity, as well as broad linear detection range, mainly because of the high specific surface area and photoelectric activity of TiO(2) NTs and the π bond delocalized electron system of PPy that promotes the separation of electron-holes. The prominent selectivity is from the MIP by forming multiple hydrogen bonds between PPy and MC-LR. Mechanisms for photoelectrochemical analysis and selective recognition are also discussed.
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Affiliation(s)
- Kang Chen
- Department of Chemistry, Tongji University, 1239 Siping Road, 200092 Shanghai, China
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