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Steinbach JC, Fait F, Wagner S, Wagner A, Brecht M, Mayer HA, Kandelbauer A. Rational Design of Pore Parameters in Monodisperse Porous Poly(glycidyl methacrylate-co-ethylene glycol dimethacrylate) Particles Based on Response Surface Methodology. Polymers (Basel) 2022; 14:polym14030382. [PMID: 35160371 PMCID: PMC8840536 DOI: 10.3390/polym14030382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 01/14/2022] [Accepted: 01/17/2022] [Indexed: 11/16/2022] Open
Abstract
Monodisperse porous poly(glycidyl methacrylate-co–ethylene glycol dimethacrylate) particles are widely applied in different fields, as their pore properties can be influenced and functionalization of the epoxy group is versatile. However, the adjustment of parameters which control morphology and pore properties such as pore volume, pore size and specific surface area is scarcely available. In this work, the effects of the process factors monomer:porogen ratio, GMA:EDMA ratio and composition of the porogen mixture on the response variables pore volume, pore size and specific surface area are investigated using a face centered central composite design. Non-linear effects of the process factors and second order interaction effects between them were identified. Despite the complex interplay of the process factors, targeted control of the pore properties was possible. For each response a response surface model was derived with high predictive power (all R2predicted > 0.85). All models were tested by four external validation experiments and their validity and predictive power was demonstrated.
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Affiliation(s)
- Julia C. Steinbach
- Process Analysis & Technology, Reutlingen Research Institute, Reutlingen University, Alteburgstraße 150, 72762 Reutlingen, Germany; (J.C.S.); (F.F.); (A.W.); (M.B.)
- Institute of Inorganic Chemistry, University of Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany; (S.W.); (H.A.M.)
| | - Fabio Fait
- Process Analysis & Technology, Reutlingen Research Institute, Reutlingen University, Alteburgstraße 150, 72762 Reutlingen, Germany; (J.C.S.); (F.F.); (A.W.); (M.B.)
- Institute of Inorganic Chemistry, University of Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany; (S.W.); (H.A.M.)
| | - Stefanie Wagner
- Institute of Inorganic Chemistry, University of Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany; (S.W.); (H.A.M.)
| | - Alexandra Wagner
- Process Analysis & Technology, Reutlingen Research Institute, Reutlingen University, Alteburgstraße 150, 72762 Reutlingen, Germany; (J.C.S.); (F.F.); (A.W.); (M.B.)
- Institute of Physical and Theoretical Chemistry, University of Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany
| | - Marc Brecht
- Process Analysis & Technology, Reutlingen Research Institute, Reutlingen University, Alteburgstraße 150, 72762 Reutlingen, Germany; (J.C.S.); (F.F.); (A.W.); (M.B.)
- Institute of Physical and Theoretical Chemistry, University of Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany
| | - Hermann A. Mayer
- Institute of Inorganic Chemistry, University of Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany; (S.W.); (H.A.M.)
| | - Andreas Kandelbauer
- Process Analysis & Technology, Reutlingen Research Institute, Reutlingen University, Alteburgstraße 150, 72762 Reutlingen, Germany; (J.C.S.); (F.F.); (A.W.); (M.B.)
- Department of Material Sciences and Process Engineering (MAP), Institute of Wood Technology and Renewable Materials, University of Natural Resources and Life Sciences, Gregor-Mendel-Straße 33, 1180 Vienna, Austria
- Correspondence: ; Tel.: +49-(0)7-12-1271-2009
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2
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Ota S, Yui Y, Sato T, Yoshimoto N, Yamamoto S. Rapid Purification of Immunoglobulin G Using a Protein A-immobilized Monolithic Spin Column with Hydrophilic Polymers. ANAL SCI 2021; 37:985-990. [PMID: 33281136 DOI: 10.2116/analsci.20p378] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2020] [Accepted: 11/29/2020] [Indexed: 08/09/2023]
Abstract
A rapid purification method was developed for antibody production in Chinese hamster ovary (CHO) cells using a Protein A-immobilized monolithic silica spin column with hydrophilic polymers. Monolithic silica modified with copolymers of 2-hydroxyethylmethacrylate (HEMA) and glycidyl methacrylate (GMA) showed lower non-specific protein absorption than that modified with a silane reagent. The epoxy group of GMA was converted to an amino group, and Protein A was modified by the coupling reagent. The amount of immobilized Protein A was controlled by changing the ratio of GMA to HEMA and the mesopore size of monolith. A modified monolith disk was fixed to a spin column for rapid antibody purification. The linear curves (for the antibody concentrations over 10 - 300 μg/mL) had a correlation coefficient of >0.999. Our column had various analytical advantages over previously reported columns, including a shorter preparation time (<10 min) and smaller sample volumes for purification with Protein A-immobilized agarose.
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Affiliation(s)
- Shigenori Ota
- Bio-Process Engineering Laboratory, Graduate School of Yamaguchi University Biomedical Engineering Center (YUBEC), 2-16-1 Tokiwadai, Ube, 755-8611, Japan.
| | - Yuko Yui
- GL Sciences Inc., 237-2 Sayamagahara, Iruma, Saitama, 358-0032, Japan
| | - Tsutomu Sato
- GL Sciences Inc., 237-2 Sayamagahara, Iruma, Saitama, 358-0032, Japan
| | - Noriko Yoshimoto
- Bio-Process Engineering Laboratory, Graduate School of Yamaguchi University Biomedical Engineering Center (YUBEC), 2-16-1 Tokiwadai, Ube, 755-8611, Japan
| | - Shuichi Yamamoto
- Bio-Process Engineering Laboratory, Graduate School of Yamaguchi University Biomedical Engineering Center (YUBEC), 2-16-1 Tokiwadai, Ube, 755-8611, Japan
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3
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Pourrostam-Ravadanaq P, Safa KD, Abbasi H. Study of imidazole performance as pseudo-affinity ligand in the purification of IgG from bovine milk. Anal Biochem 2020; 597:113693. [PMID: 32201137 DOI: 10.1016/j.ab.2020.113693] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 03/13/2020] [Accepted: 03/18/2020] [Indexed: 11/17/2022]
Abstract
The spherical sepharose CL-6B beads were activated by epichlorohydrin in different epoxy contents (80, 120 and 160 μmolepoxide/mLgel) and, l-histidine and imidazole as pseudo-affinity ligands were covalently immobilized to them. Some linkers with different length, (1,2-ethanediol diglycidyl ether and 1,4-butanediol diglycidyl ether) were synthesized for activation of sepharose and the activated sepharose beads modified with imidazole and the performance of these adsorbents in the purification of immunoglobulin G from bovine milk were evaluated. Among the l-histidine bearing adsorbents, higher adsorption of IgG (0.28 mg/mL) was obtained by adsorbent with the lower concentration of l-histidine. The highest amount of IgG adsorption (0.53 mg/mL) was obtained by imidazole bearing adsorbent with the highest amount of imidazole and Among the adsorbents with synthesized linkers, the adsorbent with 1,2-ethanediol diglycidyl ether showed better performance and was able to purify 0.25 mg/mL IgG with high purity. The synthesized pseudo-affinity adsorbents represented the abbility to purify immunoglobulin G in one-step process with high purity and efficiency.
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Affiliation(s)
| | - Kazem D Safa
- Department of Organic Chemistry and Biochemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran.
| | - Hassan Abbasi
- Department of Organic Chemistry and Biochemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran
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4
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Ku J, Kim S, Park J, Kim TS, Kharbash R, Shin EC, Char K, Kim Y, Li S. Reactive Polymer Targeting dsRNA as Universal Virus Detection Platform with Enhanced Sensitivity. Biomacromolecules 2020; 21:2440-2454. [PMID: 32233463 DOI: 10.1021/acs.biomac.0c00379] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Reactive poly(pentafluorophenyl acrylate) (PPFPA)-grafted surfaces offer a versatile platform to immobilize biomolecules. Here, we utilize PPFPA-grafted surface and double-stranded RNA (dsRNA) recognizing J2 antibody to construct a universal virus detection platform with enhanced sensitivity. PPFPA on silicon substrates is prepared, and surface hydrophilicity is modulated by partial substitution of the pentafluorophenyl units with poly(ethylene glycol). Following dsRNA antibody immobilization, the prepared surfaces can distinguish long dsRNAs from single-stranded RNAs of the same length and short dsRNAs. As long dsRNAs are common byproducts of viral transcription/replication, these surfaces can detect the presence of different kinds of viruses without prior knowledge of their genomic sequences. To increase dsRNA detection sensitivity, a two-step method is devised where the captured dsRNAs are visualized with multiple fluorophore-tagged J2 antibodies. We show that the developed platform can differentiate foreign long dsRNAs from cellular dsRNAs and other biomolecules present in the cell lysate. Moreover, when tested against cells infected with hepatitis A or C viruses, both viruses are successfully detected using a single platform. Our study shows that the developed PPFPA platform immobilized with J2 antibody can serve as a primary diagnostic tool to determine the infection status for a wide range of viruses.
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Affiliation(s)
- Jayoung Ku
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141 South Korea.,KI for Health Science and Technology (KIHST), KAIST, Daejeon 34141 South Korea
| | - Sura Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141 South Korea
| | - Jaemin Park
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141 South Korea
| | - Tae-Shin Kim
- Graduate School of Medical Science and Engineering, KAIST, Daejeon 34141 South Korea
| | - Raisa Kharbash
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141 South Korea.,KI for Health Science and Technology (KIHST), KAIST, Daejeon 34141 South Korea
| | - Eui-Cheol Shin
- Graduate School of Medical Science and Engineering, KAIST, Daejeon 34141 South Korea
| | - Kookheon Char
- School of Chemical and Biological Engineering, Seoul National University, Seoul 08826, South Korea
| | - Yoosik Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141 South Korea.,KI for Health Science and Technology (KIHST), KAIST, Daejeon 34141 South Korea
| | - Sheng Li
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141 South Korea
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5
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Matos MJB, Pina AS, Roque ACA. Rational design of affinity ligands for bioseparation. J Chromatogr A 2020; 1619:460871. [PMID: 32044126 DOI: 10.1016/j.chroma.2020.460871] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 01/05/2020] [Accepted: 01/08/2020] [Indexed: 11/25/2022]
Abstract
Affinity adsorbents have been the cornerstone in protein purification. The selective nature of the molecular recognition interactions established between an affinity ligands and its target provide the basis for efficient capture and isolation of proteins. The plethora of affinity adsorbents available in the market reflects the importance of affinity chromatography in the bioseparation industry. Ligand discovery relies on the implementation of rational design techniques, which provides the foundation for the engineering of novel affinity ligands. The main goal for the design of affinity ligands is to discover or improve functionality, such as increased stability or selectivity. However, the methodologies must adapt to the current needs, namely to the number and diversity of biologicals being developed, and the availability of new tools for big data analysis and artificial intelligence. In this review, we offer an overview on the development of affinity ligands for bioseparation, including the evolution of rational design techniques, dating back to the years of early discovery up to the current and future trends in the field.
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Affiliation(s)
- Manuel J B Matos
- UCIBIO, Chemistry Department, School of Sciences and Technology, NOVA University of Lisbon, 2829-516 Caparica, Portugal
| | - Ana S Pina
- UCIBIO, Chemistry Department, School of Sciences and Technology, NOVA University of Lisbon, 2829-516 Caparica, Portugal
| | - A C A Roque
- UCIBIO, Chemistry Department, School of Sciences and Technology, NOVA University of Lisbon, 2829-516 Caparica, Portugal.
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6
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Acquah C, Chan YW, Pan S, Yon LS, Ongkudon CM, Guo H, Danquah MK. Characterisation of aptamer-anchored poly(EDMA-co-GMA) monolith for high throughput affinity binding. Sci Rep 2019; 9:14501. [PMID: 31601836 PMCID: PMC6787036 DOI: 10.1038/s41598-019-50862-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Accepted: 09/13/2019] [Indexed: 11/17/2022] Open
Abstract
Immobilisation of aptameric ligands on solid stationary supports for effective binding of target molecules requires understanding of the relationship between aptamer-polymer interactions and the conditions governing the mass transfer of the binding process. Herein, key process parameters affecting the molecular anchoring of a thrombin-binding aptamer (TBA) onto polymethacrylate monolith pore surface, and the binding characteristics of the resulting macroporous aptasensor were investigated. Molecular dynamics (MD) simulations of the TBA-thrombin binding indicated enhanced Guanine 4 (G4) structural stability of TBA upon interaction with thrombin in an ionic environment. Fourier-transform infrared spectroscopy and thermogravimetric analyses were used to characterise the available functional groups and thermo-molecular stability of the immobilised polymer generated with Schiff-base activation and immobilisation scheme. The initial degradation temperature of the polymethacrylate stationary support increased with each step of the Schiff-base process: poly(Ethylene glycol Dimethacrylate-co-Glycidyl methacrylate) or poly(EDMA-co-GMA) [196.0 °C (±1.8)]; poly(EDMA-co-GMA)-Ethylenediamine [235.9 °C (±6.1)]; poly(EDMA-co-GMA)-Ethylenediamine-Glutaraldehyde [255.4 °C (±2.7)]; and aptamer-modified monolith [273.7 °C (±2.5)]. These initial temperature increments reflected in the associated endothermic energies were determined with differential scanning calorimetry. The aptameric ligand density obtained after immobilisation was 480 pmol/μL. Increase in pH and ionic concentration affected the surface charge distribution and the binding characteristics of the aptamer-modified disk-monoliths, resulting in the optimum binding pH and ionic concentration of 8.0 and 5 mM Mg2+, respectively. These results are critical in understanding and setting parametric constraints indispensable to develop and enhance the performance of aptasensors.
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Affiliation(s)
- Caleb Acquah
- Department of Chemical Engineering, Curtin University, Sarawak, 98009, Malaysia.,School of Nutrition Science, Faculty of Health Science, University of Ottawa, K1N 6N5, Ontario, Canada
| | - Yi Wei Chan
- Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, 88400, Malaysia
| | - Sharadwata Pan
- School of Life Sciences Weihenstephan, Technical University of Munich, Freising, 85354, Germany
| | - Lau Sie Yon
- Department of Chemical Engineering, Curtin University, Sarawak, 98009, Malaysia
| | - Clarence M Ongkudon
- Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, 88400, Malaysia
| | - Haobo Guo
- Department of Computer Science and Engineering, University of Tennessee, Chattanooga, TN, 37403, United States.,SimCenter, University of Tennessee, Chattanooga, TN, 37403, United States
| | - Michael K Danquah
- Department of Chemical Engineering, University of Tennessee, Chattanooga, TN, 37403, United States.
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7
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On-line coupling of hydrophilic ionic liquids-based polymer monolith microextraction to capillary liquid chromatography with amperometric detection: An ultrasensitive residue analysis method for glycopeptide antibiotics. J Chromatogr A 2018; 1556:10-20. [DOI: 10.1016/j.chroma.2018.04.063] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2018] [Revised: 04/24/2018] [Accepted: 04/26/2018] [Indexed: 01/06/2023]
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8
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Acquah C, Danquah MK, Chan YW, Moy CKS, Ongkudon CM, Lau SY. Chromatographic characterisation of aptamer-modified poly(EDMA-co-GMA) monolithic disk format for protein binding and separation. SEP SCI TECHNOL 2018. [DOI: 10.1080/01496395.2018.1443139] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Caleb Acquah
- Curtin Malaysia Research Institute, Curtin University, Miri, Malaysia
- Department of Chemical Engineering, Curtin University, Miri, Malaysia
| | - Michael K. Danquah
- Curtin Malaysia Research Institute, Curtin University, Miri, Malaysia
- Department of Chemical Engineering, Curtin University, Miri, Malaysia
| | - Yi Wei Chan
- Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Malaysia
| | - Charles K. S. Moy
- Department of Civil Engineering, Xi’an Jiaotong-Liverpool University, Suzhou, China
| | - Clarence M. Ongkudon
- Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Malaysia
| | - Sie Yon Lau
- Department of Chemical Engineering, Curtin University, Miri, Malaysia
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9
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Son H, Ku J, Kim Y, Li S, Char K. Amine-Reactive Poly(pentafluorophenyl acrylate) Brush Platforms for Cleaner Protein Purification. Biomacromolecules 2018; 19:951-961. [DOI: 10.1021/acs.biomac.7b01736] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Hyunjoo Son
- The National Creative Research Initiative Center for Intelligent Hybrids, School of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Korea
| | | | | | | | - Kookheon Char
- The National Creative Research Initiative Center for Intelligent Hybrids, School of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Korea
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10
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Analytical and preparative polymethacrylate monolith fabrication: effect of porogen content and column size on pore morphology. Colloid Polym Sci 2017. [DOI: 10.1007/s00396-017-4213-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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11
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Acquah C, Danquah MK, Moy CKS, Anwar M, Ongkudon CM. Parametric investigation of polymethacrylate monolith synthesis and stability via thermogravimetric characterisation. ASIA-PAC J CHEM ENG 2017. [DOI: 10.1002/apj.2077] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Caleb Acquah
- Curtin Sarawak Research Institute; Curtin University; Miri Sarawak 98009 Malaysia
- Department of Chemical Engineering; Curtin University; Miri Sarawak 98009 Malaysia
| | - Michael K. Danquah
- Curtin Sarawak Research Institute; Curtin University; Miri Sarawak 98009 Malaysia
- Department of Chemical Engineering; Curtin University; Miri Sarawak 98009 Malaysia
| | - Charles K. S. Moy
- Department of Civil Engineering; Xi'an Jiaotong-Liverpool University; Suzhou Jiangsu 215123 China
| | - Mahmood Anwar
- Department of Mechanical Engineering; Curtin University; Miri Sarawak 98009 Malaysia
| | - Clarence M. Ongkudon
- Biotechnology Research Institute; Universiti Malaysia Sabah; Kota Kinabalu Sabah 88400 Malaysia
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12
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Acquah C, Danquah MK, Moy CKS, Anwar M, Ongkudon CM. Thermogravimetric characterization of ex situ polymethacrylate (EDMA-co-GMA) monoliths. CAN J CHEM ENG 2017. [DOI: 10.1002/cjce.22781] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Caleb Acquah
- Curtin Sarawak Research Institute; Curtin University; Sarawak, 98009 Malaysia
- Department of Chemical Engineering; Curtin University; Sarawak, 98009 Malaysia
| | - Michael K. Danquah
- Curtin Sarawak Research Institute; Curtin University; Sarawak, 98009 Malaysia
- Department of Chemical Engineering; Curtin University; Sarawak, 98009 Malaysia
| | - Charles K. S. Moy
- Department of Civil Engineering; Xi'an Jiaotong-Liverpool University; Jiangsu, 215123 China
| | - Mahmood Anwar
- Department of Mechanical Engineering; Curtin University; Sarawak, 98009 Malaysia
| | - Clarence M. Ongkudon
- Biotechnology Research Institute; Universiti Malaysia Sabah, Kota Kinabalu; Sabah 88400 Malaysia
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13
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Steppert P, Burgstaller D, Klausberger M, Kramberger P, Tover A, Berger E, Nöbauer K, Razzazi‐Fazeli E, Jungbauer A. Separation of HIV‐1 gag virus‐like particles from vesicular particles impurities by hydroxyl‐functionalized monoliths. J Sep Sci 2017; 40:979-990. [DOI: 10.1002/jssc.201600765] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Revised: 11/23/2016] [Accepted: 11/23/2016] [Indexed: 11/05/2022]
Affiliation(s)
- Petra Steppert
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
| | - Daniel Burgstaller
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
| | - Miriam Klausberger
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
| | | | | | - Eva Berger
- Austrian Centre of Industrial Biotechnology Vienna Austria
| | - Katharina Nöbauer
- VetCore Facility for Research University of Veterinary Medicine Vienna Vienna Austria
| | | | - Alois Jungbauer
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
- Austrian Centre of Industrial Biotechnology Vienna Austria
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15
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Arora S, Saxena V, Ayyar BV. Affinity chromatography: A versatile technique for antibody purification. Methods 2016; 116:84-94. [PMID: 28012937 DOI: 10.1016/j.ymeth.2016.12.010] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Revised: 12/16/2016] [Accepted: 12/17/2016] [Indexed: 12/19/2022] Open
Abstract
Antibodies continue to be extremely utilized entities in myriad applications including basic research, imaging, targeted delivery, chromatography, diagnostics, and therapeutics. At production stage, antibodies are generally present in complex matrices and most of their intended applications necessitate purification. Antibody purification has always been a major bottleneck in downstream processing of antibodies, due to the need of high quality products and associated high costs. Over the years, extensive research has focused on finding better purification methodologies to overcome this holdup. Among a plethora of different techniques, affinity chromatography is one of the most selective, rapid and easy method for antibody purification. This review aims to provide a detailed overview on affinity chromatography and the components involved in purification. An array of support matrices along with various classes of affinity ligands detailing their underlying working principles, together with the advantages and limitations of each system in purifying different types of antibodies, accompanying recent developments and important practical methodological considerations to optimize purification procedure are discussed.
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Affiliation(s)
- Sushrut Arora
- Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA
| | - Vikas Saxena
- Center for Vascular and Inflammatory Diseases, School of Medicine, University of Maryland, Baltimore, MD 21201, USA
| | - B Vijayalakshmi Ayyar
- Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
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16
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Agyei D, Ongkudon CM, Wei CY, Chan AS, Danquah MK. Bioprocess challenges to the isolation and purification of bioactive peptides. FOOD AND BIOPRODUCTS PROCESSING 2016. [DOI: 10.1016/j.fbp.2016.02.003] [Citation(s) in RCA: 144] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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17
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Moravcová D, Rantamäki AH, Duša F, Wiedmer SK. Monoliths in capillary electrochromatography and capillary liquid chromatography in conjunction with mass spectrometry. Electrophoresis 2016; 37:880-912. [PMID: 26800083 DOI: 10.1002/elps.201500520] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Revised: 12/18/2015] [Accepted: 12/21/2015] [Indexed: 12/29/2022]
Abstract
Here, we have reviewed separation studies utilizing monolithic capillary columns for separation of compounds preceding MS analysis. The review is divided in two parts according to the used separation method, namely CEC and capillary LC (cLC). Based on our overview, monolithic CEC-MS technique have been more focused on the syntheses of highly specialized and selective separation phase materials for fast and efficient separation of specific types of analytes. In contrast, monolithic cLC-MS is more widely used and is often employed, for instance, in the analysis of oligonucleotides, metabolites, and peptides and proteins in proteomic studies. While poly(styrene-divinylbenzene)-based and silica-based monolithic capillaries found their place in proteomic analyses, the other laboratory-synthesized monoliths still wait for their wider utilization in routine analyses. The development of new monolithic materials will most likely continue due to the demand of more efficient and rapid separation of increasingly complex samples.
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Affiliation(s)
- Dana Moravcová
- Institute of Analytical Chemistry of the CAS, v. v. i, Brno, Czech Republic
| | | | - Filip Duša
- Institute of Analytical Chemistry of the CAS, v. v. i, Brno, Czech Republic
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18
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Acquah C, Danquah MK, Moy CKS, Ongkudon CM. In-process thermochemical analysis ofin situpoly(ethylene glycol methacrylate-co-glycidyl methacrylate) monolithic adsorbent synthesis. J Appl Polym Sci 2016. [DOI: 10.1002/app.43507] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Caleb Acquah
- Curtin Sarawak Research Institute; Curtin University; Sarawak 98009 Malaysia
- Department of Chemical Engineering; Curtin University; Sarawak 98009 Malaysia
| | - Michael K. Danquah
- Curtin Sarawak Research Institute; Curtin University; Sarawak 98009 Malaysia
- Department of Chemical Engineering; Curtin University; Sarawak 98009 Malaysia
| | - Charles K. S. Moy
- Department of Civil Engineering; Xi'an Jiaotong-Liverpool University; Jiangsu 215123 China
| | - Clarence M. Ongkudon
- Biotechnology Research Institute; Universiti Malaysia Sabah; Kota Kinabalu, Sabah 88400 Malaysia
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Acquah C, Moy CKS, Danquah MK, Ongkudon CM. Development and characteristics of polymer monoliths for advanced LC bioscreening applications: A review. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1015-1016:121-134. [PMID: 26919447 DOI: 10.1016/j.jchromb.2016.02.016] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 02/13/2016] [Accepted: 02/13/2016] [Indexed: 01/05/2023]
Abstract
Biomedical research advances over the past two decades in bioseparation science and engineering have led to the development of new adsorbent systems called monoliths, mostly as stationary supports for liquid chromatography (LC) applications. They are acknowledged to offer better mass transfer hydrodynamics than their particulate counterparts. Also, their architectural and morphological traits can be tailored in situ to meet the hydrodynamic size of molecules which include proteins, pDNA, cells and viral targets. This has enabled their development for a plethora of enhanced bioscreening applications including biosensing, biomolecular purification, concentration and separation, achieved through the introduction of specific functional moieties or ligands (such as triethylamine, N,N-dimethyl-N-dodecylamine, antibodies, enzymes and aptamers) into the molecular architecture of monoliths. Notwithstanding, the application of monoliths presents major material and bioprocess challenges. The relationship between in-process polymerisation characteristics and the physicochemical properties of monolith is critical to optimise chromatographic performance. There is also a need to develop theoretical models for non-invasive analyses and predictions. This review article therefore discusses in-process analytical conditions, functionalisation chemistries and ligands relevant to establish the characteristics of monoliths in order to facilitate a wide range of enhanced bioscreening applications. It gives emphasis to the development of functional polymethacrylate monoliths for microfluidic and preparative scale bio-applications.
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Affiliation(s)
- Caleb Acquah
- Curtin Sarawak Research Institute, Curtin University, Sarawak 98009, Malaysia; Department of Chemical Engineering, Curtin University, Sarawak 98009, Malaysia
| | - Charles K S Moy
- Department of Civil Engineering, Xi'an Jiaotong-Liverpool University, Jiangsu 215123, China
| | - Michael K Danquah
- Curtin Sarawak Research Institute, Curtin University, Sarawak 98009, Malaysia; Department of Chemical Engineering, Curtin University, Sarawak 98009, Malaysia.
| | - Clarence M Ongkudon
- Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah 88400, Malaysia
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Acquah C, Danquah MK, Agyei D, Moy CKS, Sidhu A, Ongkudon CM. Deploying aptameric sensing technology for rapid pandemic monitoring. Crit Rev Biotechnol 2015; 36:1010-1022. [PMID: 26381238 DOI: 10.3109/07388551.2015.1083940] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The genome of virulent strains may possess the ability to mutate by means of antigenic shift and/or antigenic drift as well as being resistant to antibiotics with time. The outbreak and spread of these virulent diseases including avian influenza (H1N1), severe acute respiratory syndrome (SARS-Corona virus), cholera (Vibrio cholera), tuberculosis (Mycobacterium tuberculosis), Ebola hemorrhagic fever (Ebola Virus) and AIDS (HIV-1) necessitate urgent attention to develop diagnostic protocols and assays for rapid detection and screening. Rapid and accurate detection of first cases with certainty will contribute significantly in preventing disease transmission and escalation to pandemic levels. As a result, there is a need to develop technologies that can meet the heavy demand of an all-embedded, inexpensive, specific and fast biosensing for the detection and screening of pathogens in active or latent forms to offer quick diagnosis and early treatments in order to avoid disease aggravation and unnecessary late treatment costs. Nucleic acid aptamers are short, single-stranded RNA or DNA sequences that can selectively bind to specific cellular and biomolecular targets. Aptamers, as new-age bioaffinity probes, have the necessary biophysical characteristics for improved pathogen detection. This article seeks to review global pandemic situations in relation to advances in pathogen detection systems. It particularly discusses aptameric biosensing and establishes application opportunities for effective pandemic monitoring. Insights into the application of continuous polymeric supports as the synthetic base for aptamer coupling to provide the needed convective mass transport for rapid screening is also presented.
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Affiliation(s)
- Caleb Acquah
- a Curtin Sarawak Research Institute, Curtin University , Sarawak 98009 , Malaysia.,b Department of Chemical Engineering , Curtin University , Sarawak 98009 , Malaysia
| | - Michael K Danquah
- b Department of Chemical Engineering , Curtin University , Sarawak 98009 , Malaysia
| | - Dominic Agyei
- c Centre for Chemistry and Biotechnology, School of Life and Environmental Sciences Deakin University , Geelong-Waurn Ponds , Australia
| | - Charles K S Moy
- d Faculty of Engineering and Science , Curtin University , Sarawak 98009 , Malaysia
| | - Amandeep Sidhu
- a Curtin Sarawak Research Institute, Curtin University , Sarawak 98009 , Malaysia.,e Faculty of Health Sciences , Curtin University , Perth 6102 , Australia , and
| | - Clarence M Ongkudon
- f Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu , Sabah, 88400 , Malaysia
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Silva MS, Graça VC, Reis LV, Santos PF, Silvestre S, Granadeiro L, Almeida P, Queiroz JA, Sousa F. 3,3'-Diamino-N-methyldipropylamine as a versatile affinity ligand. J Sep Sci 2015; 38:732-40. [PMID: 25556997 DOI: 10.1002/jssc.201400656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2014] [Revised: 12/07/2014] [Accepted: 12/18/2014] [Indexed: 11/10/2022]
Abstract
Currently, in biomedicine and biotechnology fields, there is a growing need to develop and produce biomolecules with a high degree of purity. To accomplish this goal, new purification methods are being developed looking for higher performance, efficiency, selectivity, and cost-effectiveness. Affinity chromatography is considered one of the most highly selective methods for biomolecules purification. The purpose of this work is to explore a new type of a structurally simple ligand immobilized onto an agarose matrix to be used in affinity chromatography. The ligand in this study, 3,3'-diamino-N-methyldipropylamine has shown low toxicity and low cost of preparation. Moreover, the ability of the ligand to be used in affinity chromatography to purify proteins and nucleic acids was verified. An increasing sodium chloride gradient, using salt concentrations up to 500 mM, was suitable to accomplish the purification of these biomolecules, meaning that the new support allows the recovery of target biomolecules under mild conditions. Thus, the 3,3'-diamino-N-methyldipropylamine ligand is shown to be a useful and versatile tool in chromatographic experiments, with very good results either for proteins or supercoiled plasmid isoform purification.
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Affiliation(s)
- Marta S Silva
- CICS-UBI-Centro de Investigação em Ciências da Saúde, Universidade da Beira Interior, Covilhã, Portugal
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22
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Nunes C, Sousa Â, Nunes JC, Morão AM, Sousa F, Queiroz JA. Supercoiled plasmid DNA purification by integrating membrane technology with a monolithic chromatography. J Sep Sci 2014; 37:1229-36. [DOI: 10.1002/jssc.201301160] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2013] [Revised: 03/05/2014] [Accepted: 03/05/2014] [Indexed: 11/08/2022]
Affiliation(s)
- Catherine Nunes
- CICS-UBI-Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - Ângela Sousa
- CICS-UBI-Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - José C. Nunes
- CICS-UBI-Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - António M. Morão
- CICS-UBI-Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - Fani Sousa
- CICS-UBI-Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - João A. Queiroz
- CICS-UBI-Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
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Ongkudon CM, Kansil T, Wong C. Challenges and strategies in the preparation of large-volume polymer-based monolithic chromatography adsorbents. J Sep Sci 2014; 37:455-64. [DOI: 10.1002/jssc.201300995] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Revised: 12/16/2013] [Accepted: 12/16/2013] [Indexed: 01/12/2023]
Affiliation(s)
- Clarence M. Ongkudon
- Bioprocess Engineering Research Group; Biotechnology Research Institute; Universiti Malaysia Sabah; Sabah Malaysia
| | - Tamar Kansil
- Bioprocess Engineering Research Group; Biotechnology Research Institute; Universiti Malaysia Sabah; Sabah Malaysia
| | - Charlotte Wong
- Bioprocess Engineering Research Group; Biotechnology Research Institute; Universiti Malaysia Sabah; Sabah Malaysia
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24
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Ongkudon CM, Pan S, Danquah MK. An innovative monolithic column preparation for the isolation of 25kilo base pairs DNA. J Chromatogr A 2013; 1318:156-62. [DOI: 10.1016/j.chroma.2013.10.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Revised: 08/27/2013] [Accepted: 10/01/2013] [Indexed: 10/26/2022]
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Martin JA, Parekh P, Kim Y, Morey TE, Sefah K, Gravenstein N, Dennis DM, Tan W. Selection of an aptamer antidote to the anticoagulant drug bivalirudin. PLoS One 2013; 8:e57341. [PMID: 23483901 PMCID: PMC3590194 DOI: 10.1371/journal.pone.0057341] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2012] [Accepted: 01/21/2013] [Indexed: 11/18/2022] Open
Abstract
Adverse drug reactions, including severe patient bleeding, may occur following the administration of anticoagulant drugs. Bivalirudin is a synthetic anticoagulant drug sometimes employed as a substitute for heparin, a commonly used anticoagulant that can cause a condition called heparin-induced thrombocytopenia (HIT). Although bivalrudin has the advantage of not causing HIT, a major concern is lack of an antidote for this drug. In contrast, medical professionals can quickly reverse the effects of heparin using protamine. This report details the selection of an aptamer to bivalirudin that functions as an antidote in buffer. This was accomplished by immobilizing the drug on a monolithic column to partition binding sequences from nonbinding sequences using a low-pressure chromatography system and salt gradient elution. The elution profile of binding sequences was compared to that of a blank column (no drug), and fractions with a chromatographic difference were analyzed via real-time PCR (polymerase chain reaction) and used for further selection. Sequences were identified by 454 sequencing and demonstrated low micromolar dissociation constants through fluorescence anisotropy after only two rounds of selection. One aptamer, JPB5, displayed a dose-dependent reduction of the clotting time in buffer, with a 20 µM aptamer achieving a nearly complete antidote effect. This work is expected to result in a superior safety profile for bivalirudin, resulting in enhanced patient care.
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Affiliation(s)
- Jennifer A. Martin
- Department of Chemistry and Department of Physiology and Functional Genomics, Shands Cancer Center and Center for Research at the Bio/nano Interface, University of Florida, Gainesville, Florida, United States of America
| | - Parag Parekh
- Department of Chemistry and Department of Physiology and Functional Genomics, Shands Cancer Center and Center for Research at the Bio/nano Interface, University of Florida, Gainesville, Florida, United States of America
| | - Youngmi Kim
- Department of Chemistry and Department of Physiology and Functional Genomics, Shands Cancer Center and Center for Research at the Bio/nano Interface, University of Florida, Gainesville, Florida, United States of America
| | - Timothy E. Morey
- Department of Anesthesiology and Pharmacology, University of Florida, Gainesville, Florida, United States of America
| | - Kwame Sefah
- Department of Chemistry and Department of Physiology and Functional Genomics, Shands Cancer Center and Center for Research at the Bio/nano Interface, University of Florida, Gainesville, Florida, United States of America
| | - Nikolaus Gravenstein
- Department of Anesthesiology and Pharmacology, University of Florida, Gainesville, Florida, United States of America
| | - Donn M. Dennis
- Department of Anesthesiology and Pharmacology, University of Florida, Gainesville, Florida, United States of America
| | - Weihong Tan
- Department of Chemistry and Department of Physiology and Functional Genomics, Shands Cancer Center and Center for Research at the Bio/nano Interface, University of Florida, Gainesville, Florida, United States of America
- * E-mail:
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26
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Podgornik A, Krajnc NL. Application of monoliths for bioparticle isolation. J Sep Sci 2012; 35:3059-72. [DOI: 10.1002/jssc.201200387] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2012] [Revised: 06/19/2012] [Accepted: 07/16/2012] [Indexed: 11/07/2022]
Affiliation(s)
- Aleš Podgornik
- The Centre of Excellence for Biosensors, Instrumentation and Process Control - COBIK; Solkan Slovenia
- BIA Separations d.o.o.; Ajdovščina Slovenia
| | - Nika Lendero Krajnc
- BIA Separations d.o.o.; Ajdovščina Slovenia
- The Centre of Excellence for Biosensors, Instrumentation and Process Control - COBIK; Solkan Slovenia
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27
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Sousa Â, Sousa F, Queiroz JA. Advances in chromatographic supports for pharmaceutical-grade plasmid DNA purification. J Sep Sci 2012; 35:3046-58. [DOI: 10.1002/jssc.201200307] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2012] [Revised: 05/28/2012] [Accepted: 06/02/2012] [Indexed: 01/04/2023]
Affiliation(s)
- Ângela Sousa
- CICS-UBI - Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - Fani Sousa
- CICS-UBI - Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
| | - João A. Queiroz
- CICS-UBI - Centro de Investigação em Ciências da Saúde; Universidade da Beira Interior; Covilhã Portugal
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Ayyar BV, Arora S, Murphy C, O'Kennedy R. Affinity chromatography as a tool for antibody purification. Methods 2011; 56:116-29. [PMID: 22033471 DOI: 10.1016/j.ymeth.2011.10.007] [Citation(s) in RCA: 117] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2011] [Revised: 10/11/2011] [Accepted: 10/12/2011] [Indexed: 11/29/2022] Open
Abstract
The global antibody market has grown exponentially due to increasing applications in research, diagnostics and therapy. Antibodies are present in complex matrices (e.g. serum, milk, egg yolk, fermentation broth or plant-derived extracts). This has led to the need for development of novel platforms for purification of large quantities of antibody with defined clinical and performance requirements. However, the choice of method is strictly limited by the manufacturing cost and the quality of the end product required. Affinity chromatography is one of the most extensively used methods for antibody purification, due to its high selectivity and rapidity. Its effectiveness is largely based on the binding characteristics of the required antibody and the ligand used for antibody capture. The approaches used for antibody purification are critically examined with the aim of providing the reader with the principles and practical insights required to understand the intricacies of the procedures. Affinity support matrices and ligands for affinity chromatography are discussed, including their relevant underlying principles of use, their potential value and their performance in purifying different types of antibodies, along with a list of commercially available alternatives. Furthermore, the principal factors influencing purification procedures at various stages are highlighted. Practical considerations for development and/or optimizations of efficient antibody-purification protocols are suggested.
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Affiliation(s)
- B Vijayalakshmi Ayyar
- Biomedical Diagnostics Institute, National Centre for Sensor Research, Dublin City University, Dublin 9, Ireland
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Shin MJ, Tan L, Jeong MH, Kim JH, Choe WS. Monolith-based immobilized metal affinity chromatography increases production efficiency for plasmid DNA purification. J Chromatogr A 2011; 1218:5273-8. [DOI: 10.1016/j.chroma.2011.06.040] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2011] [Revised: 06/03/2011] [Accepted: 06/08/2011] [Indexed: 11/24/2022]
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Sproß J, Sinz A. Monolithic media for applications in affinity chromatography. J Sep Sci 2011; 34:1958-73. [DOI: 10.1002/jssc.201100400] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Revised: 05/19/2011] [Accepted: 05/19/2011] [Indexed: 11/10/2022]
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Pucić M, Knezević A, Vidic J, Adamczyk B, Novokmet M, Polasek O, Gornik O, Supraha-Goreta S, Wormald MR, Redzić I, Campbell H, Wright A, Hastie ND, Wilson JF, Rudan I, Wuhrer M, Rudd PM, Josić D, Lauc G. High throughput isolation and glycosylation analysis of IgG-variability and heritability of the IgG glycome in three isolated human populations. Mol Cell Proteomics 2011; 10:M111.010090. [PMID: 21653738 PMCID: PMC3205872 DOI: 10.1074/mcp.m111.010090] [Citation(s) in RCA: 384] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
All immunoglobulin G molecules carry N-glycans, which modulate their biological activity. Changes in N-glycosylation of IgG associate with various diseases and affect the activity of therapeutic antibodies and intravenous immunoglobulins. We have developed a novel 96-well protein G monolithic plate and used it to rapidly isolate IgG from plasma of 2298 individuals from three isolated human populations. N-glycans were released by PNGase F, labeled with 2-aminobenzamide and analyzed by hydrophilic interaction chromatography with fluorescence detection. The majority of the structural features of the IgG glycome were consistent with previous studies, but sialylation was somewhat higher than reported previously. Sialylation was particularly prominent in core fucosylated glycans containing two galactose residues and bisecting GlcNAc where median sialylation level was nearly 80%. Very high variability between individuals was observed, approximately three times higher than in the total plasma glycome. For example, neutral IgG glycans without core fucose varied between 1.3 and 19%, a difference that significantly affects the effector functions of natural antibodies, predisposing or protecting individuals from particular diseases. Heritability of IgG glycans was generally between 30 and 50%. The individual's age was associated with a significant decrease in galactose and increase of bisecting GlcNAc, whereas other functional elements of IgG glycosylation did not change much with age. Gender was not an important predictor for any IgG glycan. An important observation is that competition between glycosyltransferases, which occurs in vitro, did not appear to be relevant in vivo, indicating that the final glycan structures are not a simple result of competing enzymatic activities, but a carefully regulated outcome designed to meet the prevailing physiological needs.
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Affiliation(s)
- Maja Pucić
- Genos Ltd., Glycobiology Division, Planinska 1, 10000 Zagreb, Croatia
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Bruchet A, Dugas V, Mariet C, Goutelard F, Randon J. Improved chromatographic performances of glycidyl methacrylate anion-exchange monolith for fast nano-ion exchange chromatography. J Sep Sci 2011; 34:2079-87. [DOI: 10.1002/jssc.201100180] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2011] [Revised: 04/11/2011] [Accepted: 04/11/2011] [Indexed: 11/10/2022]
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Ongkudon CM, Danquah MK. Anion exchange chromatography of 4.2kbp plasmid based vaccine (pcDNA3F) from alkaline lysed E. coli lysate using amino functionalised polymethacrylate conical monolith. Sep Purif Technol 2011. [DOI: 10.1016/j.seppur.2011.01.039] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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34
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Process optimisation for anion exchange monolithic chromatography of 4.2kbp plasmid vaccine (pcDNA3F). J Chromatogr B Analyt Technol Biomed Life Sci 2010; 878:2719-25. [DOI: 10.1016/j.jchromb.2010.08.011] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2010] [Revised: 08/11/2010] [Accepted: 08/12/2010] [Indexed: 11/22/2022]
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Porous monoliths: sorbents for miniaturized extraction in biological analysis. Anal Bioanal Chem 2010; 399:3345-57. [DOI: 10.1007/s00216-010-4190-x] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2010] [Revised: 09/01/2010] [Accepted: 09/01/2010] [Indexed: 10/19/2022]
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Katebi AR, Kloczkowski A, Jernigan RL. Structural interpretation of protein-protein interaction network. BMC STRUCTURAL BIOLOGY 2010; 10 Suppl 1:S4. [PMID: 20487511 PMCID: PMC2873827 DOI: 10.1186/1472-6807-10-s1-s4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Background Currently a huge amount of protein-protein interaction data is available from high throughput experimental methods. In a large network of protein-protein interactions, groups of proteins can be identified as functional clusters having related functions where a single protein can occur in multiple clusters. However experimental methods are error-prone and thus the interactions in a functional cluster may include false positives or there may be unreported interactions. Therefore correctly identifying a functional cluster of proteins requires the knowledge of whether any two proteins in a cluster interact, whether an interaction can exclude other interactions, or how strong the affinity between two interacting proteins is. Methods In the present work the yeast protein-protein interaction network is clustered using a spectral clustering method proposed by us in 2006 and the individual clusters are investigated for functional relationships among the member proteins. 3D structural models of the proteins in one cluster have been built – the protein structures are retrieved from the Protein Data Bank or predicted using a comparative modeling approach. A rigid body protein docking method (Cluspro) is used to predict the protein-protein interaction complexes. Binding sites of the docked complexes are characterized by their buried surface areas in the docked complexes, as a measure of the strength of an interaction. Results The clustering method yields functionally coherent clusters. Some of the interactions in a cluster exclude other interactions because of shared binding sites. New interactions among the interacting proteins are uncovered, and thus higher order protein complexes in the cluster are proposed. Also the relative stability of each of the protein complexes in the cluster is reported. Conclusions Although the methods used are computationally expensive and require human intervention and judgment, they can identify the interactions that could occur together or ones that are mutually exclusive. In addition indirect interactions through another intermediate protein can be identified. These theoretical predictions might be useful for crystallographers to select targets for the X-ray crystallographic determination of protein complexes.
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Affiliation(s)
- Ataur R Katebi
- L.H. Baker Center for Bioinformatics and Biological Statistics, Iowa State University, Ames, Iowa 50011-0320, USA
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