A Conjugated Polymer-Based Electrochemical DNA Sensor: Design and Application of a Multi-Functional and Water-Soluble Conjugated Polymer

Ferrocene-Bearing Dodecylphthalocyanines: Synthesis, Spectroscopic and Electrochemical Behavior

Ferrocenylbutoxy-bearing dodecylated phthalocyanines, MPc(C₁₂H₂₅)_x(OC₄H₈Fc)_y with M = 2H (compound series 6 and 8) or Zn (compound series 5, 7 and 9), x ≤ 8 and y ≤ 4, were synthesized through either metal-free statistical condensation between 3,6-bis(dodecyl)phthalonitrile, 2, and 4- (1), or 3-(4'-ferrocenylbutoxy)phthalonitrile, 4, or a zinc template statistical condensation between 4,5-bis(dodecyl)phthalonitrile, 3, and 1 in the presence of anhydrous zinc acetate, or by zinc insertion into metal-free phthalocyanines. Compounds were designed to have eight nonperipheral dodecyl substituents, six nonperipheral dodecyl, either one peripheral or one nonperipheral 4'-ferrocenylbutoxy substituent, four nonperipheral dodecyl and two peripheral 4'-ferrocenylbutoxy substituents, or four peripheral 4'-ferrocenylbutoxy substituents. The compound having six peripheral dodecyl and one peripheral 4'-ferrocenylbutoxy substituents was also synthesized. Metal-free and zinc complex Q-band maximum absorption wavelengths increased nonlinearly from 704 to 725 nm for the Q_y-band of metal-free compounds, or from 676 to 699 nm for the Q-band of zinc complexes in moving from all peripheral-substituted to all non-peripheral-substituted complexes. A rare case of accidental Q-band degeneracy where only one electronic Q-band is observed for asymmetrical zinc complexes NOT having D_4h symmetry, compounds 5, 7b-e, and 9b, is also described. X-ray photoelectron spectroscopy (XPS) differentiated between four types of phthalocyanine nitrogen atoms; binding energies were ca. 399.8 (N-H), 398.1 (N_meso), 397.8 (N_core), and 398.7 eV (N-Zn), respectively. An electrochemical study of these compounds revealed up to five different redox processes in dichloromethane but only three in tetrahydrofuran (THF). The first ring-based oxidation of both metal-free compounds 6a-e and zinc phthalocyanines 7a-e exhibited a near-linear increase in peak anodic potentials, E_pa, with the systematic replacement of two nonperipheral dodecyl substituents with one peripheral 4'-ferrocenylbutoxy group. When four 4'-ferrocenylbutoxy groups were substituted on the phthalocyanine macrocycle, aggregation of the first oxidized species was observed. Zinc insertion into metal-free phthalocyanines lowered formal redox potentials. An electrochemical scheme consistent with electrochemical results is provided.

New Strategy for Ultrasensitive Aptasensor Fabrication: D-A-D Constitution as a Charge Transfer Platform and Recognition Element

Over the past decade, various sensing systems based on aptamers have attracted a great deal of studies directed at designing highly selective biosensors. In this paper, we described a new-style electrochemical aptamer sensor (aptasensor) via a donor-acceptor link substrate, which was characterized by electrochemical methods and other helpful characterization instruments. Molecules with D-A-D configuration always undergo an intrinsic signal amplification due to the elongation of the π-electron conjugation. Triphenylamine, a peripheral electron donor, has excellent hole-transport property and is able to assemble on the surface of glassy carbon electrode by π-π stacking interaction. To further improve the performance of the adenosine triphosphate (ATP) sensor, we chose diphenylfumaronitrile-containing electron-withdrawing group as the central core to promote charge transfer, which can also efficiently combine with aptamers by multihydrogen bond function. Surprisingly, the sensing platform showed a wide liner range from 0.1 pM to 100 nM, with a detection limit of 0.018 pM. We examined the ATP in human serum sample, indicating that the novel aptasensor based on D-A-D conjugated polymer holds great possibility for practical detection of ATP. Moreover, it is foreseeable that the conjugated polymers of the D-A structure will have promising application in the preparation of biosensors.

Target-responsive structural switching for nucleic acid-based sensors

Interest in the development of sensitive, selective, rapid, and cost-effective biosensors for biomedical analysis, environmental monitoring, and the detection of bioterrorism agents is rapidly increasing. A classic biosensor directly transduces ligand-target binding events into a measurable physical readout. More recently, researchers have proposed novel biosensing strategies that couple ligand-induced structural switching of biomolecules with advanced optical and electronic transducers. This approach has proven to be a highly general platform for the development of new biosensors. In this Account, we describe a series of electrochemical and optical nucleic acid sensors that use target-responsive DNA structures. By employing surface-confined DNA structures with appropriate redox labels, we can monitor target-induced structural switching of DNA or aptamer-specific small molecule probes by measuring electrochemical currents that are directly associated with the distance between the redox label and the electrode surface. We have also demonstrated significant improvements in sensing performance through optimization of the DNA self-assembly process at electrode surfaces or the introduction of nanomaterial-based signal amplification. Alternatively, gold nanoparticles interact differently with folded and unfolded DNA structures, which provides a visual method for detecting target-induced structural switching based on the plasmonic change of gold nanoparticles. This novel method using gold nanoparticles has proven particularly suitable for the detection of a range of small-molecule targets (e.g., cocaine) and environmentally toxic metal ions (e.g., Hg(2+)). Rational sequence design of DNA aptamers improves the sensitivity and increases the reaction kinetics. Recently, we have also designed microfluidic devices that allow rapid and portable mercury detection with the naked eye. This Account focuses on the use of bulk and nanoscale gold and DNA/aptamer molecules. We expect that researchers will further expand the analyte spectrum and improve the sensitivity and selectivity of nucleic acid sensors using functional biomolecules, such as DNAzymes, peptide aptamers and engineered proteins, and nanomaterials of different sizes, dimensions and compositions, such as carbon nanotubes, graphene, silicon nanowires, and metal nanoparticles or nanorods.