1
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Szatko M, Forysiak W, Kozub S, Andruniów T, Szweda R. Revealing the Effect of Stereocontrol on Intermolecular Interactions between Abiotic, Sequence-Defined Polyurethanes and a Ligand. ACS Biomater Sci Eng 2024; 10:3727-3738. [PMID: 38804015 PMCID: PMC11167595 DOI: 10.1021/acsbiomaterials.4c00456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Revised: 04/26/2024] [Accepted: 05/14/2024] [Indexed: 05/29/2024]
Abstract
The development of precision polymer synthesis has facilitated access to a diverse library of abiotic structures wherein chiral monomers are positioned at specific locations within macromolecular chains. These structures are anticipated to exhibit folding characteristics similar to those of biotic macromolecules and possess comparable functionalities. However, the extensive sequence space and numerous variables make selecting a sequence with the desired function challenging. Therefore, revealing sequence-function dependencies and developing practical tools are necessary to analyze their conformations and molecular interactions. In this study, we investigate the effect of stereochemistry, which dictates the spatial location of backbone and pendant groups, on the interaction between sequence-defined oligourethanes and bisphenol A ligands. Various methods are explored to analyze the receptor-like properties of model oligomers and the ligand. The accuracy of molecular dynamics simulations and experimental techniques is assessed to uncover the impact of discrete changes in stereochemical arrangements on the structures of the resulting complexes and their binding strengths. Detailed computational investigations providing atomistic details show that the formed complexes demonstrate significant structural diversity depending on the sequence of stereocenters, thus affecting the oligomer-ligand binding strength. Among the tested techniques, the fluorescence spectroscopy data, fitted to the Stern-Volmer equation, are consistently aligned with the calculations, thus validating the developed simulation methodology. The developed methodology opens a way to engineer the structure of sequence-defined oligomers with receptor-like functionality to explore their practical applications, e.g., as sensory materials.
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Affiliation(s)
- Maksymilian Szatko
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
- Department
of Chemistry, Wrocław University of
Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland
| | - Weronika Forysiak
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
- Faculty
of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Sara Kozub
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
| | - Tadeusz Andruniów
- Department
of Chemistry, Wrocław University of
Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland
| | - Roza Szweda
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
- Center
for Advanced Technologies, Adam Mickiewicz
University, Uniwersytetu Poznańskiego 8, 61-614 Poznan, Poland
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2
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Yang B, Cui T, Guo L, Dong L, Wu J, Xing Y, Xu Y, Chen J, Wang Y, Cui Z, Dong Y. Advanced Smart Biomaterials for Regenerative Medicine and Drug Delivery Based on Phosphoramidite Chemistry: From Oligonucleotides to Precision Polymers. Biomacromolecules 2024; 25:2701-2714. [PMID: 38608139 DOI: 10.1021/acs.biomac.4c00259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2024]
Abstract
Over decades of development, while phosphoramidite chemistry has been known as the leading method in commercial synthesis of oligonucleotides, it has also revolutionized the fabrication of sequence-defined polymers (SDPs), offering novel functional materials in polymer science and clinical medicine. This review has introduced the evolution of phosphoramidite chemistry, emphasizing its development from the synthesis of oligonucleotides to the creation of universal SDPs, which have unlocked the potential for designing programmable smart biomaterials with applications in diverse areas including data storage, regenerative medicine and drug delivery. The key methodologies, functions, biomedical applications, and future challenges in SDPs, have also been summarized in this review, underscoring the significance of breakthroughs in precisely synthesized materials.
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Affiliation(s)
- Bo Yang
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Ting Cui
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Liang Guo
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Lianqiang Dong
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Wu
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yongzheng Xing
- National Engineering Research Center for Colloidal Materials, School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Yun Xu
- Center for Medical Device Evaluation, China Food and Drug Administration (CFDA), Beijing 100084, China
| | - Jian Chen
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Yufei Wang
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Zhonghui Cui
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Yuanchen Dong
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
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3
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Zhang L, Krause TB, Deol H, Pandey B, Xiao Q, Park HM, Iverson BL, Law D, Anslyn EV. Chemical and linguistic considerations for encoding Chinese characters: an embodiment using chain-end degradable sequence-defined oligourethanes created by consecutive solid phase click chemistry. Chem Sci 2024; 15:5284-5293. [PMID: 38577351 PMCID: PMC10988576 DOI: 10.1039/d3sc06189b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 03/05/2024] [Indexed: 04/06/2024] Open
Abstract
Sequence-defined polymers (SDPs) are currently being investigated for use as information storage media. As the number of monomers in the SDPs increases, with a corresponding increase in mathematical base, the use of tandem-MS for de novo sequencing becomes more challenging. In contrast, chain-end degradation routines are truly de novo, potentially allowing very large mathematical bases for encoding. While alphabetic scripts have a few dozen symbols, logographic scripts, such as Chinese, can have several thousand symbols. Using a new in situ consecutive click reaction approach on an oligourethane backbone for writing, and a previously reported chain-end degradation routine for reading, we encoded/decoded a confucius proverb written in Chinese characters using two encoding schemes: Unicode and Zhèng Mă. Unicode is an internationally standardized arbitrary string of hexadecimal (base-16) symbols which efficiently encodes uniquely identifiable symbols but requires complete fidelity of transmission, or context-based inferential strategies to be interpreted. The Zhèng Mă approach encodes with a base-26 system using the visual characteristics and internal composition of Chinese characters themselves, which leads to greater ambiguity of encoded strings, but more robust retrievability of information from partial or corrupted encodings. The application of information-encoded oligourethanes to two different encoding systems allowed us to establish their flexibility and versatility for data storage. We found the oligourethanes immensely adaptable to both encoding schemes for Chinese characters, and we highlight the expected tradeoff between the efficiency and uniqueness of Unicode encoding on the one hand, and the fidelity to a scripts' particular visual characteristics on the other.
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Affiliation(s)
- Le Zhang
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
| | - Todd B Krause
- Linguistics Research Center, The University of Texas at Austin TX 78712 USA
| | - Harnimarta Deol
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
| | - Bipin Pandey
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
| | - Qifan Xiao
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
| | - Hyun Meen Park
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
| | - Brent L Iverson
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
| | - Danny Law
- Department of Linguistics, The University of Texas at Austin TX 78721 USA
- Linguistics Research Center, The University of Texas at Austin TX 78712 USA
| | - Eric V Anslyn
- Department of Chemistry, The University of Texas at Austin TX 78721 USA
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4
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Sergent I, Schutz T, Oswald L, Obeid G, Lutz JF, Charles L. Using Nitroxides To Model the Ion Mobility Behavior of Nitroxide-Ended Oligomers: A Bottom-up Approach To Predict Mobility Separation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024; 35:534-541. [PMID: 38345914 DOI: 10.1021/jasms.3c00393] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Abstract
Block-truncated poly(phosphodiester)s are digital macromolecules storing binary information that can be decoded by MS/MS sequencing of individual blocks released as primary fragments of the entire polymer. As such, they are ideal species for the serial sequencing methodology enabled by MS-(CID)-IMS-(CID)-MS coupling, where two activation stages are combined in-line with ion mobility spectrometry (IMS) separation. Yet, implementation of this coupling still requires efforts to achieve IMS resolution of inner blocks, that can be considered as small oligomers with α termination composed of one nitroxide decorated with a different tag. As shown by molecular dynamics simulation, these oligomers adopt a conformation where the tag points out of the coil formed by the chain. Accordingly, the sole nitroxide termination was investigated here as a model to reduce the cost of calculation aimed at predicting the shift of collision cross-section (CCS) induced by new tag candidates and extrapolate this effect to nitroxide-terminated oligomers. A library of 10 nitroxides and 7 oligomers was used to validate our calculation methods by comparison with experimental IMS data as well as our working assumption. Based on conformation predicted by theoretical calculation, three new tag candidates could be proposed to achieve the +40 Å2 CCS shift required to ensure IMS separation of oligomers regardless of their coded sequence.
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Affiliation(s)
- Isaure Sergent
- Aix Marseille Université, CNRS, UMR 7273, Institut de Chimie Radicalaire (ICR), 13397 Marseille Cedex 20, France
| | - Thibault Schutz
- Université de Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), 67000 Strasbourg, France
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 67034 Strasbourg Cedex 2, France
| | - Laurence Oswald
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 67034 Strasbourg Cedex 2, France
| | - Georgette Obeid
- Université de Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), 67000 Strasbourg, France
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), 67000 Strasbourg, France
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 67034 Strasbourg Cedex 2, France
| | - Laurence Charles
- Aix Marseille Université, CNRS, UMR 7273, Institut de Chimie Radicalaire (ICR), 13397 Marseille Cedex 20, France
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5
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Xiao Y, Sun Y, Wang X, Xu Y, Wang J. A General Strategy To Access Alternating Styrene/Substituted Styrene Copolymers by Using a Traceless Controlling Group. Angew Chem Int Ed Engl 2023; 62:e202313265. [PMID: 37819780 DOI: 10.1002/anie.202313265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/10/2023] [Accepted: 10/11/2023] [Indexed: 10/13/2023]
Abstract
We herein report a synthetic strategy for alternating copolymers of styrene and substituted styrenes by utilizing α-styryl boronate pinacol ester (StBpin) as the co-monomer through radical alternating copolymerization followed by protodeboronation. The excellent alternating polymerization behavior of the StBpin co-monomer in such a radical polymerization system is considered to be attributed to the steric hindrance and radical stabilization exerted by the Bpin group. This strategy is effective with a wide range of substituted styrene co-monomers regardless of the electronic nature of the substituents, and the protodeboronation of the alternating Bpin-containing polymers is highly efficient without polymer backbone alternation. RAFT living polymerization was also compatible with this approach. Thus, this strategy provides a way to build-up alternating copolymers consisting of similar styrene-type co-monomers, which has been inaccessible by conventional synthetic methods.
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Affiliation(s)
- Yiyang Xiao
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing, 100871, China
| | - Yichen Sun
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing, 100871, China
| | - Xin Wang
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing, 100871, China
| | - Yan Xu
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing, 100871, China
| | - Jianbo Wang
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing, 100871, China
- The State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032, China
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6
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Perez Mellor AF, Brazard J, Kozub S, Bürgi T, Szweda R, Adachi TBM. Unveiling the Configurational Landscape of Carbamate: Paving the Way for Designing Functional Sequence-Defined Polymers. J Phys Chem A 2023; 127:7309-7322. [PMID: 37624607 PMCID: PMC10493977 DOI: 10.1021/acs.jpca.3c02442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 08/11/2023] [Indexed: 08/26/2023]
Abstract
Carbamate is an emerging class of a polymer backbone for constructing sequence-defined, abiotic polymers. It is expected that new functional materials can be de novo designed by controlling the primary polycarbamate sequence. While amino acids have been actively studied as building blocks for protein folding and peptide self-assembly, carbamates have not been widely investigated from this perspective. Here, we combined infrared (IR), vibrational circular dichroism (VCD), and nuclear magnetic resonance (NMR) spectroscopy with density functional theory (DFT) calculations to understand the conformation of carbamate monomer units in a nonpolar, aprotic environment (chloroform). Compared with amino acid building blocks, carbamates are more rigid, presumably due to the extended delocalization of π-electrons on the backbones. Cis configurations of the amide bond can be energetically stable in carbamates, whereas peptides often assume trans configurations at low energies. This study lays an essential foundation for future developments of carbamate-based sequence-defined polymer material design.
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Affiliation(s)
- Ariel F. Perez Mellor
- Department
of Physical Chemistry, Sciences II, University
of Geneva, 30, Quai Ernest Ansermet, Geneva 1211, Switzerland
| | - Johanna Brazard
- Department
of Physical Chemistry, Sciences II, University
of Geneva, 30, Quai Ernest Ansermet, Geneva 1211, Switzerland
| | - Sara Kozub
- Łukasiewicz
Research Network − PORT Polish Center for Technology Development, Stabłowicka 147, Wrocław 54-066, Poland
| | - Thomas Bürgi
- Department
of Physical Chemistry, Sciences II, University
of Geneva, 30, Quai Ernest Ansermet, Geneva 1211, Switzerland
| | - Roza Szweda
- Łukasiewicz
Research Network − PORT Polish Center for Technology Development, Stabłowicka 147, Wrocław 54-066, Poland
| | - Takuji B. M. Adachi
- Department
of Physical Chemistry, Sciences II, University
of Geneva, 30, Quai Ernest Ansermet, Geneva 1211, Switzerland
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7
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Zhang M, Liu Y, Zuo X, Qian S, Pingali SV, Gillilan RE, Huang Q, Zhang D. pH-Dependent Solution Micellar Structure of Amphoteric Polypeptoid Block Copolymers with Positionally Controlled Ionizable Sites. Biomacromolecules 2023; 24:3700-3715. [PMID: 37478325 PMCID: PMC10428163 DOI: 10.1021/acs.biomac.3c00407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 07/09/2023] [Indexed: 07/23/2023]
Abstract
While solution micellization of ionic block copolymers (BCP) with randomly distributed ionization sites along the hydrophilic segments has been extensively studied, the roles of positionally controlled ionization sites along the BCP chains in their micellization and resulting micellar structure remain comparatively less understood. Herein, three amphoteric polypeptoid block copolymers carrying two oppositely charged ionizable sites, with one fixed at the hydrophobic terminus and the other varyingly positioned along the hydrophilic segment, have been synthesized by sequential ring-opening polymerization method. The presence of the ionizable site at the hydrophobic segment terminus is expected to promote polymer association toward equilibrium micellar structures in an aqueous solution. The concurrent presence of oppositely charged ionizable sites on the polymer chains allows the polymer association to be electrostatically modulated in a broad pH range (ca. 2-12). Micellization of the amphoteric polypeptoid BCP in dilute aqueous solution and the resulting micellar structure at different solution pHs was investigated by a combination of scattering and microscopic methods. Negative-stain transmission-electron microscopy (TEM), small-angle neutron scattering (SANS), and small-angle X-ray scattering (SAXS) analyses revealed the dominant presence of core-shell-type spherical micelles and occasional rod-like micelles with liquid crystalline (LC) domains in the micellar core. The micellar structures (e.g., aggregation number, radius of gyration, chain packing in the micelle) were found to be dependent on the solution pH and the position of the ionizable site along the chain. This study has highlighted the potential of controlling the position of ionizable sites along the BCP polymer to modulate the electrostatic and LC interactions, thus tailoring the micellar structure at different solution pH values in water.
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Affiliation(s)
- Meng Zhang
- Department
of Chemistry and Macromolecular Studies Group, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Yun Liu
- Center
for Neutron Research, National Institute
of Standards and Technology, Gaithersburg, Maryland 20899, United States
| | - Xiaobing Zuo
- X-ray
Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Shuo Qian
- Neutron
Scattering Division and Second Target Station, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Sai Venkatesh Pingali
- Neutron
Scattering Division, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Richard E. Gillilan
- MacCHESS
(Macromolecular Diffraction Facility at CHESS), Cornell University, Ithaca, New York 14850, United States
| | - Qingqiu Huang
- MacCHESS
(Macromolecular Diffraction Facility at CHESS), Cornell University, Ithaca, New York 14850, United States
| | - Donghui Zhang
- Department
of Chemistry and Macromolecular Studies Group, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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8
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Aksakal R, Tonneaux C, Uvyn A, Fossépré M, Turgut H, Badi N, Surin M, De Geest BG, Du Prez FE. Sequence-defined antibody-recruiting macromolecules. Chem Sci 2023; 14:6572-6578. [PMID: 37350815 PMCID: PMC10284026 DOI: 10.1039/d3sc01507f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 05/22/2023] [Indexed: 06/24/2023] Open
Abstract
Antibody-recruiting molecules represent a novel class of therapeutic agents that mediate the recruitment of endogenous antibodies to target cells, leading to their elimination by the immune system. Compared to single-ligand copies, macromolecular scaffolds presenting multiple copies of an antibody-binding ligand offer advantages in terms of increased complex avidity. In this study, we describe the synthesis of sequence-defined macromolecules designed for antibody recruitment, utilising dinitrophenol (DNP) as a model antibody-recruiting motif. The use of discrete macromolecules gives access to varying the spacing between DNP motifs while maintaining the same chain length. This characteristic enables the investigation of structure-dependent binding interactions with anti-DNP antibodies. Through solid-phase thiolactone chemistry, we synthesised a series of oligomers with precisely localised DNP motifs along the backbone and a terminal biotin motif for surface immobilisation. Utilising biolayer interferometry analysis, we observed that oligomers with adjacent DNP motifs exhibited enhanced avidity for anti-DNP antibodies. Molecular modelling provided insights into the structures and dynamics of the various macromolecules, shedding light on the accessibility of the ligands to the antibodies. Overall, our findings highlight that the use of sequence-defined macromolecules can contribute to our understanding of structure-activity relationships and provide insights for the design of novel antibody-recruiting therapeutic agents.
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Affiliation(s)
- Resat Aksakal
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University 9000 Ghent Belgium
| | - Corentin Tonneaux
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons-UMONS 7000 Mons Belgium
| | - Annemiek Uvyn
- Department of Pharmaceutics, Ghent University Ottergemsesteenweg 460 9000 Ghent Belgium
| | - Mathieu Fossépré
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons-UMONS 7000 Mons Belgium
| | - Hatice Turgut
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University 9000 Ghent Belgium
| | - Nezha Badi
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University 9000 Ghent Belgium
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons-UMONS 7000 Mons Belgium
| | - Bruno G De Geest
- Department of Pharmaceutics, Ghent University Ottergemsesteenweg 460 9000 Ghent Belgium
| | - Filip E Du Prez
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University 9000 Ghent Belgium
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9
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Zhang X, Yu T, Ding S. Iridium-Catalyzed Synthesis of Chiral 1,2,3-Triazoles Units and Precise Construction of Stereocontrolled Oligomers. Molecules 2023; 28:molecules28093726. [PMID: 37175140 PMCID: PMC10180159 DOI: 10.3390/molecules28093726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 04/21/2023] [Accepted: 04/24/2023] [Indexed: 05/15/2023] Open
Abstract
Iridium-catalyzed azide-thioalkyne cycloaddition reaction (IrAAC) has proved to be a powerful tool for the synthesis of fully substituted 1,2,3-triazole compounds with exclusive regioselectivity. Here we report its successful use in the precise construction of stereocontrolled oligomers that have great potential in diverse applications. Starting with the azide derived from L-prolinol and different functionalized thioalkynes, chiral 1,2,3-triazole units were fabricated with high efficiency under the IrAAC condition, which were further assembled into stereocontrolled oligotriazoles through metal-free exponential growth strategies. The structure and uniformity of these oligomers were well identified by 1H NMR, size-exclusion chromatography, and mass spectrometry, the stereoregularity of which were studied through circular dichroism and circular polarized luminescence analysis.
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Affiliation(s)
- Xueyan Zhang
- State Key Laboratory of Organic-Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Tian Yu
- State Key Laboratory of Organic-Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Shengtao Ding
- State Key Laboratory of Organic-Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
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10
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Shi QQ, Zhou X, Xu J, Wang N, Zhang JL, Hu XL, Liu SY. Controlled Fabrication of Uniform Digital Nanorods from Precise Sequence-Defined Amphiphilic Polymers in Aqueous Media. CHINESE JOURNAL OF POLYMER SCIENCE 2023. [DOI: 10.1007/s10118-023-2946-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
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11
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Han H, Seale JSW, Feng L, Qiu Y, Stoddart JF. Sequence‐controlled synthesis of rotaxanes. JOURNAL OF POLYMER SCIENCE 2023. [DOI: 10.1002/pol.20220691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Han Han
- Department of Chemistry Northwestern University Evanston Illinois USA
| | - James S. W. Seale
- Department of Chemistry Northwestern University Evanston Illinois USA
| | - Liang Feng
- Department of Chemistry Northwestern University Evanston Illinois USA
| | - Yunyan Qiu
- Department of Chemistry National University of Singapore Singapore Republic of Singapore
| | - J. Fraser Stoddart
- Department of Chemistry Northwestern University Evanston Illinois USA
- School of Chemistry University of New South Wales Sydney Australia
- Department of Chemistry, Stoddart Institute of Molecular Science Zhejiang University Hangzhou China
- ZJU‐Hangzhou Global Scientific and Technological Innovation Center Hangzhou China
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12
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Ren X, Guo C, Li X, Wu Y, Zhang Y, Li S, Zhang K. Protecting-Group-Free Iterative Divergent/Convergent Method for Preparing Sequence-Defined Polymers. Macromolecules 2023. [DOI: 10.1021/acs.macromol.2c02090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Xiangzhu Ren
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Changjuan Guo
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xijuan Li
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Ying Wu
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Yu Zhang
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Shumu Li
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
| | - Ke Zhang
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
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13
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Boyer C, Kamigaito M, Satoh K, Moad G. Radical-Promoted Single-unit Monomer Insertion (SUMI) [aka. Reversible-Deactivation Radical Addition (RDRA)]. Prog Polym Sci 2023. [DOI: 10.1016/j.progpolymsci.2023.101648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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14
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Kamon Y, Miura J, Okuno K, Yamasaki S, Nakahata M, Hashidzume A. Synthesis of Stereoregular Uniform Oligomers Possessing a Dense 1,2,3-Triazole Backbone. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Yuri Kamon
- Administrative Department, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka560-0043, Japan
| | - Junji Miura
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka560-0043, Japan
| | - Koji Okuno
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka560-0043, Japan
| | - Shota Yamasaki
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka560-0043, Japan
| | - Masaki Nakahata
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka560-0043, Japan
| | - Akihito Hashidzume
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka560-0043, Japan
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15
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Soete M, Mertens C, Badi N, Du Prez FE. Reading Information Stored in Synthetic Macromolecules. J Am Chem Soc 2022; 144:22378-22390. [PMID: 36454647 DOI: 10.1021/jacs.2c10316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
The storage of information in synthetic (macro)molecules provides an attractive alternative for current archival storage media, and the advancements made within this area have prompted the investigation of such molecules for numerous other applications (e.g., anti-counterfeiting tags, steganography). While different strategies have been described for storing information at the molecular level, this Perspective aims to provide a critical overview of the most prominent approaches that can be utilized for retrieving the encoded information. The major part will focus on the sequence determination of synthetic macromolecules, wherein information is stored by the precise arrangement of constituting monomers, with an emphasis on chemically aided strategies, (tandem) mass spectrometry, and nanopore sensing. In addition, recent progress in utilizing (mixtures of) small molecules for information storage will be discussed. Finally, the closing remarks aim to highlight which strategy we believe is the most suitable for a series of specific applications, and will also touch upon the future research avenues that can be pursued for reading (macro)molecular information.
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Affiliation(s)
- Matthieu Soete
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium
| | - Chiel Mertens
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium
| | - Nezha Badi
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium
| | - Filip E Du Prez
- Polymer Chemistry Research Group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium
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16
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Cwynar P, Pasikowski P, Szweda R. One-pot approach for multi-step, iterative synthesis of sequence-defined oligocarbamates. Eur Polym J 2022. [DOI: 10.1016/j.eurpolymj.2022.111706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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17
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Gerdt P, Studer A. Alternating Terpolymers through Cyclopolymerization and Subsequent Orthogonal Functionalization. Angew Chem Int Ed Engl 2022; 61:e202206964. [PMID: 35622377 PMCID: PMC9796892 DOI: 10.1002/anie.202206964] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Indexed: 01/07/2023]
Abstract
A method for the synthesis of functionalized alternating copolymers by reversible deactivation radical polymerization was developed. Copolymerization by reversible addition-fragmentation chain transfer of hexenyl vinyl ether with a novel fluorinated divinyl monomer yields alternating cyclopolymers that can be chemoselectively modified by three distinct orthogonal functionalization reactions. Along the thiol-ene click reaction and amidation, a third functionalization was achieved via NHC-catalyzed transesterification or acylation resulting in a small library of ABC-type alternating terpolymers.
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Affiliation(s)
- Philipp Gerdt
- Organisch-Chemisches InstitutWestfälische Wilhelms-UniversitätCorrensstrasse 3648149MünsterGermany
| | - Armido Studer
- Organisch-Chemisches InstitutWestfälische Wilhelms-UniversitätCorrensstrasse 3648149MünsterGermany
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18
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Guo Z, He J. Synthesis of Linear and Cyclic Discrete Oligomers with Defined Sequences via Efficient Anionic Coupling Reaction. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Zhenhao Guo
- The State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
| | - Junpo He
- The State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
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19
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Hoffmann M, Snyder NL, Hartmann L. Polymers Inspired by Heparin and Heparan Sulfate for Viral Targeting. Macromolecules 2022; 55:7957-7973. [PMID: 36186574 PMCID: PMC9520969 DOI: 10.1021/acs.macromol.2c00675] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 08/12/2022] [Indexed: 11/30/2022]
Affiliation(s)
- Miriam Hoffmann
- Department of Organic Chemistry and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Nicole L. Snyder
- Department of Chemistry, Davidson College, Davidson, North Carolina 28035, United States
| | - Laura Hartmann
- Department of Organic Chemistry and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany
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20
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Molecular data storage with zero synthetic effort and simple read-out. Sci Rep 2022; 12:13878. [PMID: 35974033 PMCID: PMC9381582 DOI: 10.1038/s41598-022-18108-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 08/05/2022] [Indexed: 11/21/2022] Open
Abstract
Compound mixtures represent an alternative, additional approach to DNA and synthetic sequence-defined macromolecules in the field of non-conventional molecular data storage, which may be useful depending on the target application. Here, we report a fast and efficient method for information storage in molecular mixtures by the direct use of commercially available chemicals and thus, zero synthetic steps need to be performed. As a proof of principle, a binary coding language is used for encoding words in ASCII or black and white pixels of a bitmap. This way, we stored a 25 × 25-pixel QR code (625 bits) and a picture of the same size. Decoding of the written information is achieved via spectroscopic (1H NMR) or chromatographic (gas chromatography) analysis. In addition, for a faster and automated read-out of the data, we developed a decoding software, which also orders the data sets according to an internal “ordering” standard. Molecular keys or anticounterfeiting are possible areas of application for information-containing compound mixtures.
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21
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Kamigaito M. Evolutions of precision radical polymerizations from metal-catalyzed radical addition: living polymerization, step-growth polymerization, and monomer sequence control. Polym J 2022. [DOI: 10.1038/s41428-022-00680-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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22
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Berg MT, Herberg A, Kuckling D. Hyphenation of ultra-high-performance liquid chromatography and ion mobility mass spectrometry for the analysis of sequence-defined oligomers with different functionalities and tacticity. INTERNATIONAL JOURNAL OF POLYMER ANALYSIS AND CHARACTERIZATION 2022. [DOI: 10.1080/1023666x.2022.2100968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
| | - Artjom Herberg
- Department of Chemistry, Paderborn University, Paderborn, Germany
| | - Dirk Kuckling
- Department of Chemistry, Paderborn University, Paderborn, Germany
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23
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Youssef I, Carvin-Sergent I, Konishcheva E, Kebe S, Greff V, Karamessini D, Matloubi M, Ouahabi AA, Moesslein J, Amalian JA, Poyer S, Charles L, Lutz JF. Covalent Attachment and Detachment by Reactive DESI of Sequence-Coded Polymer Taggants. Macromol Rapid Commun 2022; 43:e2200412. [PMID: 35803899 DOI: 10.1002/marc.202200412] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 06/30/2022] [Indexed: 11/11/2022]
Abstract
The use of sequence-defined polymers is an interesting emerging solution for materials identification and traceability. Indeed, a very large amount of identification sequences can be created using a limited alphabet of coded monomers. However, in all reported studies, sequence-defined taggants are usually included in a host material by non-covalent adsorption or entrapment, which may lead to leakage, aggregation or degradation. To avoid these problems, sequence-defined polymers were covalently-attached in the present work to the mesh of model materials, namely acrylamide hydrogels. To do so, sequence-coded polyurethanes containing a disulfide linker and a terminal methacrylamide moiety were synthesized by stepwise solid-phase synthesis. These methacrylamide macromonomers were afterwards copolymerized with acrylamide and bisacrylamide in order to achieve crosslinked hydrogels containing covalently-bound polyurethane taggants. It is shown herein that these taggants can be selectively detached from the hydrogel mesh by reactive desorption electrospray ionization. Using dithiothreitol the disulfide linker that link the taggant to the gel can be selectively cleaved. Ultimately, the released taggants can be decoded by tandem mass spectrometry. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Itab Youssef
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
| | - Isaure Carvin-Sergent
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, Marseille Cedex 20, 13397, France
| | - Evgeniia Konishcheva
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
| | - Seydina Kebe
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
| | - Vincent Greff
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
| | - Denise Karamessini
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
| | - Maziar Matloubi
- Polysecure GmbH, Sankt-Georgener Str. 19, Freiburg, 79111, Germany
| | - Abdelaziz Al Ouahabi
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France.,Polysecure GmbH, Sankt-Georgener Str. 19, Freiburg, 79111, Germany
| | - Jochen Moesslein
- Polysecure GmbH, Sankt-Georgener Str. 19, Freiburg, 79111, Germany
| | - Jean-Arthur Amalian
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, Marseille Cedex 20, 13397, France
| | - Salomé Poyer
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, Marseille Cedex 20, 13397, France
| | - Laurence Charles
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, Marseille Cedex 20, 13397, France
| | - Jean-François Lutz
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
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24
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Gerdt P, Studer A. Alternating Terpolymers through Cyclopolymerization and Subsequent Orthogonal Functionalization. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Philipp Gerdt
- Westfälische Wilhelms-Universität Münster Fachbereich 12 Chemie und Pharmazie: Westfalische Wilhelms-Universitat Munster Fachbereich 12 Chemie und Pharmazie Chemistry and pharmacy GERMANY
| | - Armido Studer
- Westfalische Wilhelms-Universitat Munster Organisch-Chemisches Institut Corrensstrasse 40 48149 Münster GERMANY
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25
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Precise Pentamers with Diverse Monomer Sequences and Their Thermal Properties. CHINESE JOURNAL OF POLYMER SCIENCE 2022. [DOI: 10.1007/s10118-022-2689-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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26
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Li X, Han L, Zhang R, Li C, Zhang S, Bai H, Wang X, Wang B, Ma H. Regulation from gradient to near periodic sequence during anionic copolymerization of styrene and dimethyl-[4-(1-phenyl-vinyl)phenyl]silane (DPE-SiH). POLYMER 2022. [DOI: 10.1016/j.polymer.2022.124663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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27
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Giuffrida SG, Forysiak W, Cwynar P, Szweda R. Shaping Macromolecules for Sensing Applications—From Polymer Hydrogels to Foldamers. Polymers (Basel) 2022; 14:polym14030580. [PMID: 35160568 PMCID: PMC8840496 DOI: 10.3390/polym14030580] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 01/21/2022] [Accepted: 01/23/2022] [Indexed: 12/14/2022] Open
Abstract
Sensors are tools for detecting, recognizing, and recording signals from the surrounding environment. They provide measurable information on chemical or physical changes, and thus are widely used in diagnosis, environment monitoring, food quality checks, or process control. Polymers are versatile materials that find a broad range of applications in sensory devices for the biomedical sector and beyond. Sensory materials are expected to exhibit a measurable change of properties in the presence of an analyte or a stimulus, characterized by high sensitivity and selectivity of the signal. Signal parameters can be tuned by material features connected with the restriction of macromolecule shape by crosslinking or folding. Gels are crosslinked, three-dimensional networks that can form cavities of different sizes and forms, which can be adapted to trap particular analytes. A higher level of structural control can be achieved by foldamers, which are macromolecules that can attain well-defined conformation in solution. By increasing control over the three-dimensional structure, we can improve the selectivity of polymer materials, which is one of the crucial requirements for sensors. Here, we discuss various examples of polymer gels and foldamer-based sensor systems. We have classified and described applied polymer materials and used sensing techniques. Finally, we deliberated the necessity and potential of further exploration of the field towards the increased selectivity of sensory devices.
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Affiliation(s)
- Simone Giuseppe Giuffrida
- Łukasiewicz Research Network—PORT Polish Center for Technology Development, ul. Stabłowicka 147, 54-066 Wrocław, Poland; (S.G.G.); (W.F.); (P.C.)
| | - Weronika Forysiak
- Łukasiewicz Research Network—PORT Polish Center for Technology Development, ul. Stabłowicka 147, 54-066 Wrocław, Poland; (S.G.G.); (W.F.); (P.C.)
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie, 50-383 Wrocław, Poland
| | - Pawel Cwynar
- Łukasiewicz Research Network—PORT Polish Center for Technology Development, ul. Stabłowicka 147, 54-066 Wrocław, Poland; (S.G.G.); (W.F.); (P.C.)
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Roza Szweda
- Łukasiewicz Research Network—PORT Polish Center for Technology Development, ul. Stabłowicka 147, 54-066 Wrocław, Poland; (S.G.G.); (W.F.); (P.C.)
- Correspondence:
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28
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Nguyen D, Tao L, Li Y. Integration of Machine Learning and Coarse-Grained Molecular Simulations for Polymer Materials: Physical Understandings and Molecular Design. Front Chem 2022; 9:820417. [PMID: 35141207 PMCID: PMC8819075 DOI: 10.3389/fchem.2021.820417] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 12/31/2021] [Indexed: 12/21/2022] Open
Abstract
In recent years, the synthesis of monomer sequence-defined polymers has expanded into broad-spectrum applications in biomedical, chemical, and materials science fields. Pursuing the characterization and inverse design of these polymer systems requires our fundamental understanding not only at the individual monomer level, but also considering the chain scales, such as polymer configuration, self-assembly, and phase separation. However, our accessibility to this field is still rudimentary due to the limitations of traditional design approaches, the complexity of chemical space along with the burdened cost and time issues that prevent us from unveiling the underlying monomer sequence-structure-property relationships. Fortunately, thanks to the recent advancements in molecular dynamics simulations and machine learning (ML) algorithms, the bottlenecks in the tasks of establishing the structure-function correlation of the polymer chains can be overcome. In this review, we will discuss the applications of the integration between ML techniques and coarse-grained molecular dynamics (CGMD) simulations to solve the current issues in polymer science at the chain level. In particular, we focus on the case studies in three important topics—polymeric configuration characterization, feed-forward property prediction, and inverse design—in which CGMD simulations are leveraged to generate training datasets to develop ML-based surrogate models for specific polymer systems and designs. By doing so, this computational hybridization allows us to well establish the monomer sequence-functional behavior relationship of the polymers as well as guide us toward the best polymer chain candidates for the inverse design in undiscovered chemical space with reasonable computational cost and time. Even though there are still limitations and challenges ahead in this field, we finally conclude that this CGMD/ML integration is very promising, not only in the attempt of bridging the monomeric and macroscopic characterizations of polymer materials, but also enabling further tailored designs for sequence-specific polymers with superior properties in many practical applications.
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Affiliation(s)
- Danh Nguyen
- Department of Mechanical Engineering, University of Connecticut, Mansfield, CT, United States
| | - Lei Tao
- Department of Mechanical Engineering, University of Connecticut, Mansfield, CT, United States
| | - Ying Li
- Department of Mechanical Engineering, University of Connecticut, Mansfield, CT, United States
- Polymer Program, Institute of Materials Science, University of Connecticut, Mansfield, CT, United States
- *Correspondence: Ying Li,
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29
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Maruyama K, Kanazawa A, Aoshima S. ABC-Type Periodic Terpolymer Synthesis by a One-Pot Approach Consisting of Oxirane- and Carbonyl-Derived Cyclic Acetal Generation and Subsequent Living Cationic Alternating Copolymerization with a Vinyl Monomer. Macromolecules 2022. [DOI: 10.1021/acs.macromol.1c02468] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Kazuya Maruyama
- Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Arihiro Kanazawa
- Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Sadahito Aoshima
- Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
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30
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Miyajima M, Satoh K, Kamigaito M. Periodically Functionalized Sequence‐Regulated Vinyl Polymers via Iterative Atom Transfer Radical Additions and Acyclic Diene Metathesis Polymerization. MACROMOL CHEM PHYS 2022. [DOI: 10.1002/macp.202100426] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Masato Miyajima
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo‐cho, Chikusa‐ku Nagoya 464‐8603 Japan
| | - Kotaro Satoh
- Department of Chemical Science and Engineering School of Materials and Chemical Technology Tokyo Institute of Technology 2‐12‐1‐H120 Ookayama, Meguro‐ku Tokyo 152‐8550 Japan
| | - Masami Kamigaito
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo‐cho, Chikusa‐ku Nagoya 464‐8603 Japan
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31
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Forysiak W, Kozub S, John L, Szweda R. Discrete oligourethanes of sequence-regulated properties – impact of stereocontrol. Polym Chem 2022. [DOI: 10.1039/d2py00299j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Properties and functions of natural biopolymers such as proteins are strongly dependent on the sequence of amino acid monomers. The regulation of the properties of synthetic polymers by controlling monomer...
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32
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Ide Y, Manabe Y, Inaba Y, Kinoshita Y, Pirillo J, Hijikata Y, Yoneda T, Shivakumar KI, Tanaka S, Asakawa H, Inokuma Y. Determination of the critical chain length for macromolecular crystallization using structurally flexible polyketones. Chem Sci 2022; 13:9848-9854. [PMID: 36199636 PMCID: PMC9434099 DOI: 10.1039/d2sc03083g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 07/21/2022] [Indexed: 11/21/2022] Open
Abstract
Critical chain length that divides small molecular crystallization from macromolecular crystallization is an important index in macro-organic chemistry to predict chain-length dependent properties of oligomers and polymers. However, extensive researches...
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Affiliation(s)
- Yuki Ide
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Kita 21, Nishi 10, Kita-ku Sapporo Hokkaido 001-0021 Japan
| | - Yumehiro Manabe
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University Kita 13, Nishi 8, Kita-ku Sapporo Hokkaido 060-8628 Japan
| | - Yuya Inaba
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University Kita 13, Nishi 8, Kita-ku Sapporo Hokkaido 060-8628 Japan
| | - Yusuke Kinoshita
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Kita 21, Nishi 10, Kita-ku Sapporo Hokkaido 001-0021 Japan
| | - Jenny Pirillo
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Kita 21, Nishi 10, Kita-ku Sapporo Hokkaido 001-0021 Japan
| | - Yuh Hijikata
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Kita 21, Nishi 10, Kita-ku Sapporo Hokkaido 001-0021 Japan
| | - Tomoki Yoneda
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University Kita 13, Nishi 8, Kita-ku Sapporo Hokkaido 060-8628 Japan
| | - Kilingaru I Shivakumar
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Kita 21, Nishi 10, Kita-ku Sapporo Hokkaido 001-0021 Japan
| | - Saki Tanaka
- Nanomaterials Research Institute (NanoMaRi), Graduate School of Natural Science and Technology, and Nano Life Science Institute (WPI-NanoLSI), Kanazawa University Kanazawa 920-1192 Japan
| | - Hitoshi Asakawa
- Nanomaterials Research Institute (NanoMaRi), Graduate School of Natural Science and Technology, and Nano Life Science Institute (WPI-NanoLSI), Kanazawa University Kanazawa 920-1192 Japan
| | - Yasuhide Inokuma
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Kita 21, Nishi 10, Kita-ku Sapporo Hokkaido 001-0021 Japan
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University Kita 13, Nishi 8, Kita-ku Sapporo Hokkaido 060-8628 Japan
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33
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Johnson H, Chambers LC, Holloway JO, Bousgas A, Akhtar-Khavari A, Blinco J, Barner-Kowollik C. Using precision polymer chemistry for plastics traceability and governance. Polym Chem 2022. [DOI: 10.1039/d2py01180h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Resolving the anonymity of plastic materials is critical for safeguarding the well-being of our natural environments and human health.
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Affiliation(s)
- Hope Johnson
- School of Law, Faculty of Business and Law, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Lewis C. Chambers
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Joshua O. Holloway
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Annastasia Bousgas
- School of Law, Faculty of Business and Law, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Afshin Akhtar-Khavari
- School of Law, Faculty of Business and Law, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - James Blinco
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Christopher Barner-Kowollik
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
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34
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De Franceschi I, Mertens C, Badi N, Du Prez F. Uniform soluble support for the large-scale synthesis of sequence-defined macromolecules. Polym Chem 2022. [DOI: 10.1039/d2py00883a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A monodisperse soluble support is used as an effective tool for the large-scale, liquid-phase synthesis of sequence-defined macromolecules. This uniform support allows for direct characterisation and leads to a single peak in mass spectrometry.
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Affiliation(s)
- Irene De Franceschi
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
| | - Chiel Mertens
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
| | - Nezha Badi
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
| | - Filip Du Prez
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
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35
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Leguizamon SC, Scott TF. Mimicking DNA Functions with Abiotic, Sequence-Defined Polymers. POLYM REV 2021. [DOI: 10.1080/15583724.2021.2014519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Samuel C. Leguizamon
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA
| | - Timothy F. Scott
- Department of Chemical Engineering, Monash University, Clayton, VIC, Australia
- Department of Materials Science and Engineering, Monash University, Clayton, VIC, Australia
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36
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Song B, Lu D, Qin A, Tang BZ. Combining Hydroxyl-Yne and Thiol-Ene Click Reactions to Facilely Access Sequence-Defined Macromolecules for High-Density Data Storage. J Am Chem Soc 2021; 144:1672-1680. [PMID: 34961318 DOI: 10.1021/jacs.1c10612] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Through mimicking the synthesis of hereditary-information-containing nucleic acids, scientists are committed to synthesizing sequence-defined macromolecules. Herein, a protecting-group-free, metal-free, and atom-economical chemistry combining hydroxyl-yne and thiol-ene click reactions was developed to efficiently synthesize sequence-defined oligo(monothioacetals) (overall yield of 54% for an 11-step synthesis) from readily available starting compounds and monomers under ambient conditions. The sequences of linear oligo(monothioacetals) could be easily decoded via a tandem ESI-MS/MS technique, making them new kinds of digital macromolecules with a high data storage density (0.013 bit/Da). Moreover, star oligo(monothioacetals) could also be facilely generated through divergent and convergent strategies and their combination. An unprecedented sequence-defined miktoarm star oligo(monothioacetal) was obtained, which could serve as a new nonlinear digital macromolecule to achieve 2D information matrix encoding and hold great potential to be applied for information encryption, anticouterfeiting, secret communication, etc. Thus, this work provides a powerful stepwise iterative approach to facilely access sequence-defined linear and topological oligo(monothioacetals) for high-density data storage.
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Affiliation(s)
- Bo Song
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, AIE Institute, Center for Aggregation-Induced Emission, South China University of Technology, Guangzhou 510640, People's Republic of China
| | - Dan Lu
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, AIE Institute, Center for Aggregation-Induced Emission, South China University of Technology, Guangzhou 510640, People's Republic of China
| | - Anjun Qin
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, AIE Institute, Center for Aggregation-Induced Emission, South China University of Technology, Guangzhou 510640, People's Republic of China
| | - Ben Zhong Tang
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, AIE Institute, Center for Aggregation-Induced Emission, South China University of Technology, Guangzhou 510640, People's Republic of China.,Shenzhen Institute of Aggregate Science and Engineering, School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Boulevard, Longgang District, Shenzhen City, Guangdong 518172, People's Republic of China.,Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong 999077, People's Republic of China
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37
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Affiliation(s)
- Maria Nerantzaki
- Université de Strasbourg CNRS Institut Charles Sadron UPR22 23 rue du Loess Strasbourg Cedex 2 67034 France
| | - Jean‐François Lutz
- Université de Strasbourg CNRS Institut Charles Sadron UPR22 23 rue du Loess Strasbourg Cedex 2 67034 France
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38
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Kwon Y, Kim KT. Crystallization-Driven Self-Assembly of Block Copolymers Having Monodisperse Poly(lactic acid)s with Defined Stereochemical Sequences. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01825] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yongbeom Kwon
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Kyoung Taek Kim
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
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39
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Wang X, Zhang X, Sun Y, Ding S. Stereocontrolled Sequence-Defined Oligotriazoles through Metal-Free Elongation Strategies. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01371] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Xiaojun Wang
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Xueyan Zhang
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Yunxin Sun
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Shengtao Ding
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
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40
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Facile tuning of hydrogel properties by manipulating cationic-aromatic monomer sequences. Sci China Chem 2021. [DOI: 10.1007/s11426-021-1010-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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41
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Fittolani G, Tyrikos-Ergas T, Vargová D, Chaube MA, Delbianco M. Progress and challenges in the synthesis of sequence controlled polysaccharides. Beilstein J Org Chem 2021; 17:1981-2025. [PMID: 34386106 PMCID: PMC8353590 DOI: 10.3762/bjoc.17.129] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 07/22/2021] [Indexed: 01/15/2023] Open
Abstract
The sequence, length and substitution of a polysaccharide influence its physical and biological properties. Thus, sequence controlled polysaccharides are important targets to establish structure-properties correlations. Polymerization techniques and enzymatic methods have been optimized to obtain samples with well-defined substitution patterns and narrow molecular weight distribution. Chemical synthesis has granted access to polysaccharides with full control over the length. Here, we review the progress towards the synthesis of well-defined polysaccharides. For each class of polysaccharides, we discuss the available synthetic approaches and their current limitations.
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Affiliation(s)
- Giulio Fittolani
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Theodore Tyrikos-Ergas
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Denisa Vargová
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Manishkumar A Chaube
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Martina Delbianco
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
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42
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Zhong H, Deng J. Preparation and Chiral Applications of Optically Active Polyamides. Macromol Rapid Commun 2021; 42:e2100341. [PMID: 34347330 DOI: 10.1002/marc.202100341] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 07/05/2021] [Indexed: 12/24/2022]
Abstract
Chirality is omnipresent in nature and plays vital roles in living organism, and has become a hot research topic across multidisciplinary fields including chemistry, biology, physics, and material science. Meanwhile, polyamides constitute an important class of polymers and have received significant attention owing to their outstanding properties and wide-ranging applications in many areas. Judiciously introducing chirality into polyamides will undoubtedly obtain attractive chiral polymers, namely, optically active polyamides. This review describes the preparation methods of chiral polyamides, including solution polycondensation, interfacial polycondensation, ring-open polymerization, and others; the newly emerging categories of chiral polyamides, i.e., helical polyamides, chiral polyamide-imides, are also presented. The applications of optically active polyamides in chiral research fields including asymmetric catalysis, membrane separation, and enantioselective crystallization are also summarized. In addition, current challenges in chiral polyamides are further presented and future perspectives in the field are proposed.
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Affiliation(s)
- Hai Zhong
- State Key Laboratory of Chemical Resource Engineering and College of Materials Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China
| | - Jianping Deng
- State Key Laboratory of Chemical Resource Engineering and College of Materials Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China
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43
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Li Z, Cai B, Yang W, Chen CL. Hierarchical Nanomaterials Assembled from Peptoids and Other Sequence-Defined Synthetic Polymers. Chem Rev 2021; 121:14031-14087. [PMID: 34342989 DOI: 10.1021/acs.chemrev.1c00024] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In nature, the self-assembly of sequence-specific biopolymers into hierarchical structures plays an essential role in the construction of functional biomaterials. To develop synthetic materials that can mimic and surpass the function of these natural counterparts, various sequence-defined bio- and biomimetic polymers have been developed and exploited as building blocks for hierarchical self-assembly. This review summarizes the recent advances in the molecular self-assembly of hierarchical nanomaterials based on peptoids (or poly-N-substituted glycines) and other sequence-defined synthetic polymers. Modern techniques to monitor the assembly mechanisms and characterize the physicochemical properties of these self-assembly systems are highlighted. In addition, discussions about their potential applications in biomedical sciences and renewable energy are also included. This review aims to highlight essential features of sequence-defined synthetic polymers (e.g., high stability and protein-like high-information content) and how these unique features enable the construction of robust biomimetic functional materials with high programmability and predictability, with an emphasis on peptoids and their self-assembled nanomaterials.
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Affiliation(s)
- Zhiliang Li
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.,Institute of Molecular Science and Engineering, Institute of Frontier and Interdisciplinary Science, Shandong University, Qingdao, Shandong 266237, China
| | - Bin Cai
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.,School of Chemistry and Chemical Engineering, Shandong University, Shandong 250100, China
| | - Wenchao Yang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.,School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300072, China
| | - Chun-Long Chen
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.,Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, United States
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44
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Le Guen C, Dussouillez C, Kichler A, Chan-Seng D. Insertion of hydrophobic spacers on dodecalysines as potential transfection enhancers. Eur Polym J 2021. [DOI: 10.1016/j.eurpolymj.2021.110654] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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45
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Zhang X, Gou F, Wang X, Wang Y, Ding S. Easily Functionalized and Readable Sequence-Defined Polytriazoles. ACS Macro Lett 2021; 10:551-557. [PMID: 35570766 DOI: 10.1021/acsmacrolett.1c00145] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Developing sequence-defined skeletons that could be conveniently characterized and functionalized with diverse side groups is attractive but challenging. Here we report one novel sequence-defined polytriazole structure bearing side groups at its triazole rings. Its construction was facilely accessed by the iterative employments of azidation and iridium-catalyzed cycloaddition of azide with internal 1-thioalkyne (IrAAC) in solution phase. The easy preparation of 1-thioalkyne monomers and the excellent tolerance of IrAAC enable the introduction of diverse functional side chains to this architecture. The obtained sequence was effectively characterized by tandem mass spectrometry owing to the efficient fractures of both of the Csp3-S and Csp3-N bonds in its backbone, indicating its potential utilization in high-capacity digital polymer developments. Further successful application of this structure in building monodisperse macromolecules exhibiting aggregation-induced emission (AIE) characteristics demonstrates its expected application in functional material fabrications.
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Affiliation(s)
- Xueyan Zhang
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Fuqi Gou
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Xiaojun Wang
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Yong Wang
- BGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China
| | - Shengtao Ding
- State Key Laboratory of Organic−Inorganic Composites, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
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46
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Higuchi M, Kanazawa A, Aoshima S. Unzipping and scrambling
reaction‐induced
sequence control of copolymer chains via temperature changes during cationic
ring‐opening
copolymerization of cyclic acetals and cyclic esters. JOURNAL OF POLYMER SCIENCE 2021. [DOI: 10.1002/pol.20210197] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Motoki Higuchi
- Department of Macromolecular Science, Graduate School of Science Osaka University Toyonaka Osaka Japan
| | - Arihiro Kanazawa
- Department of Macromolecular Science, Graduate School of Science Osaka University Toyonaka Osaka Japan
| | - Sadahito Aoshima
- Department of Macromolecular Science, Graduate School of Science Osaka University Toyonaka Osaka Japan
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47
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Dahlhauser SD, Moor SR, Vera MS, York JT, Ngo P, Boley AJ, Coronado JN, Simpson ZB, Anslyn EV. Efficient molecular encoding in multifunctional self-immolative urethanes. CELL REPORTS. PHYSICAL SCIENCE 2021; 2:100393. [PMID: 34755143 PMCID: PMC8573738 DOI: 10.1016/j.xcrp.2021.100393] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Molecular encoding in sequence-defined polymers shows promise as a new paradigm for data storage. Here, we report what is, to our knowledge, the first use of self-immolative oligourethanes for storing and reading encoded information. As a proof of principle, we describe how a text passage from Jane Austen's Mansfield Park was encoded in sequence-defined oligourethanes and reconstructed via self-immolative sequencing. We develop Mol.E-coder, a software tool that uses a Huffman encoding scheme to convert the character table to hexadecimal. The oligourethanes are then generated by a high-throughput parallel synthesis. Sequencing of the oligourethanes by self-immolation is done concurrently in a parallel fashion, and the liquid chromatography-mass spectrometry (LC-MS) information decoded by our Mol.E-decoder software. The passage is capable of being reproduced wholly intact by a third-party, without any purifications or the use of tandem MS (MS/MS), despite multiple rounds of compression, encoding, and synthesis.
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Affiliation(s)
| | - Sarah R. Moor
- University of Texas at Austin, Austin, TX 78712, USA
| | | | | | - Phuoc Ngo
- University of Texas at Austin, Austin, TX 78712, USA
| | | | | | | | - Eric V. Anslyn
- University of Texas at Austin, Austin, TX 78712, USA
- Lead contact
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48
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Pasch P, Höing A, Ueclue S, Killa M, Voskuhl J, Knauer SK, Hartmann L. PEGylated sequence-controlled macromolecules using supramolecular binding to target the Taspase1/Importin α interaction. Chem Commun (Camb) 2021; 57:3091-3094. [PMID: 33625405 DOI: 10.1039/d0cc07139k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
A novel strategy to inhibit the oncologically relevant protease Taspase1 is explored by developing PEGylated macromolecular ligands presenting the supramolecular binding motif guanidiniocarbonylpyrrole (GCP). Taspase1 requires interaction of its nuclear localization signal (NLS) with import receptor Importin α. We show the synthesis and effective interference of PEGylated multivalent macromolecular ligands with Taspase1-Importin α-complex formation.
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Affiliation(s)
- Peter Pasch
- Department for Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University Düsseldorf, Universitätsstraße 1, Düsseldorf 40225, Germany.
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49
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Ousaka N, Endo T. One-Pot Nonisocyanate Synthesis of Sequence-Controlled Poly(hydroxy urethane)s from a Bis(six-membered cyclic carbonate) and Two Different Diamines. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c00045] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Naoki Ousaka
- Molecular Engineering Institute, Kyushu Institute of Technology, Tobata-ku, Kitakyushu 804-8550, Japan
| | - Takeshi Endo
- Molecular Engineering Institute, Kyushu Institute of Technology, Tobata-ku, Kitakyushu 804-8550, Japan
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50
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Hahn D, Schneider RV, Foitzik E, Meier MAR. A Practical and Efficient Synthesis of Uniform Conjugated Rod-Like Oligomers. Macromol Rapid Commun 2021; 42:e2000735. [PMID: 33646627 DOI: 10.1002/marc.202000735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Herein, a more practical and efficient synthesis protocol for the preparation of uniform rod-like oligo(1,4-phenylene ethynylene)s (OPE)s is presented. Applying an iterative reaction cycle consisting of a decarboxylative coupling reaction and a saponification of an alkynyl carboxylic ester, a uniform pentamer is obtained in ten steps with 14% overall yield. The copper-free conditions prevent homocoupling until the trimer stage, resulting in a significantly easier work-up of the products. Homocoupling is observed from the tetramer stage on, but a simple variation of the work-up procedure also yields the uniform tetramer and pentamer. A thorough comparison with the commonly used and described Sonogashira approach reveals that with the new presented strategy, OPEs can be built in similar overall yield, but easier purification and in a quarter of the time. All oligomers are fully characterized by proton and carbon nuclear magnetic resonance spectroscopy (NMR), mass spectrometry (MS), size-exclusion chromatography (SEC), and infrared spectroscopy (IR).
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Affiliation(s)
- Daniel Hahn
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, Karlsruhe, 76131, Germany
| | - Rebekka V Schneider
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, Karlsruhe, 76131, Germany
| | - Elena Foitzik
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, Karlsruhe, 76131, Germany
| | - Michael A R Meier
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, Karlsruhe, 76131, Germany.,Laboratory of Applied Chemistry, Institute of Biological and Chemical Systems - Functional Material Systems (IBCS-FMS), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, 76344, Germany
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