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Li Y, Yan Z, Lin A, Yang X, Li X, Yin X, Li W, Li K. Epidermal oxysterols function as alarm substances in zebrafish. iScience 2024; 27:109660. [PMID: 38650983 PMCID: PMC11033690 DOI: 10.1016/j.isci.2024.109660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 02/12/2024] [Accepted: 04/01/2024] [Indexed: 04/25/2024] Open
Abstract
Alarm substances signal imminent predation thread and enable anti-predation strategies. In shoaling fish, alarm cues diffuse from injured skins that induce intense fear and anti-predation behaviors in other members. While these "fear substances" are shown to be present in numerous fishes and thought to exist in roughly 8,000 Ostariophysan species, their chemical nature remains largely unknown. We posited that fish alarm cues comprise small compounds and induce specific behaviors characteristic of fish exposed to skin extracts. Using the behaviors as bioassays, we tracked the alarm function of zebrafish skin extract to two compounds, 24-methyl-5α-cholestane-3α,7α,12α,24,28-pentahydroxy 28-sulfate, an oxysterol sulfate, and 5α-cyprinol sulfate. At concentrations of less than one nanomolar, each compound induced anti-predator behaviors and increased cortisol levels in zebrafish. Their mixture, at the natural ratio, replicated the skin extract in eliciting the full suite of anti-predator behavior patterns. Our findings reveal a molecular mechanism whereby fish escape predation danger.
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Affiliation(s)
- Yaxi Li
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhi Yan
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
- School of Ocean, Yantai University, Yantai 264005, China
| | - Ainuo Lin
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiao Yang
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaodong Li
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Xiuli Yin
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Weiming Li
- Department of Fisheries & Wildlife, Michigan State University, Lansing, MI 48824, USA
| | - Ke Li
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
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Zi Z, Rao Y. Discoveries of GPR39 as an evolutionarily conserved receptor for bile acids and of its involvement in biliary acute pancreatitis. SCIENCE ADVANCES 2024; 10:eadj0146. [PMID: 38306436 PMCID: PMC10836733 DOI: 10.1126/sciadv.adj0146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 01/04/2024] [Indexed: 02/04/2024]
Abstract
Acute pancreatitis (AP) is one of the most common gastrointestinal diseases. Bile acids (BAs) were proposed to be a cause of AP nearly 170 years ago, though the underlying mechanisms remain unclear. Here, we report that two G protein-coupled receptors, GPR39 and GHSR, mediated cellular responses to BAs. Our results revealed GPR39 as an evolutionarily conserved receptor for BAs, particularly 3-O-sulfated lithocholic acids. In cultured cell lines, GPR39 is sufficient for BA-induced Ca2+ elevation. In pancreatic acinar cells, GPR39 mediated BA-induced Ca2+ elevation and necrosis. Furthermore, AP induced by BAs was significantly reduced in GPR39 knockout mice. Our findings provide in vitro and in vivo evidence demonstrating that GPR39 is necessary and sufficient to mediate BA signaling, highlighting its involvement in biliary AP pathogenesis, and suggesting it as a promising therapeutic target for biliary AP.
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Affiliation(s)
- Zhentao Zi
- Chinese Institutes for Medical Research, Beijing (CIMR, Beijing) and the State Key Laboratory of Digestive Health, Beijing Friendship Hospital, Capital Medical University, Beijing, China
- Peking-Tsinghua Center for Life Sciences, PKU-IDG/McGovern Institute for Brain Research, School of Life Sciences, School of Pharmaceutical Sciences, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
| | - Yi Rao
- Chinese Institutes for Medical Research, Beijing (CIMR, Beijing) and the State Key Laboratory of Digestive Health, Beijing Friendship Hospital, Capital Medical University, Beijing, China
- Peking-Tsinghua Center for Life Sciences, PKU-IDG/McGovern Institute for Brain Research, School of Life Sciences, School of Pharmaceutical Sciences, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
- Changping Laboratory, Chinese Institute of Brain Research Beijing and Research Unit of Medical Neurobiology, Chinese Academy of Medical Sciences, Beijing 102206, China
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Hahn M, von Elert E. One Kairomone and Multiple Effects in Daphnia Species—5α-Cyprinol Sulfate Induces Morphological Defenses in the Invasive Species Daphnia lumholtzi. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.804521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Recently, the first chemical cues, which induce defenses in freshwater zooplankton of the genus Daphnia have been identified. Still it is unknown how general these so-called kairomones are and if they are perceived by and thereby benefitting invasive species. We here report the chemical identity of the fish-derived chemical signal that induces morphological defensive structures in the invasive species Daphnia lumholtzi. We used bioassay-guided isolation (LC-MS) of incubation water of fish and identified the bile salt 5α-cyprinol sulfate (5α-CPS) as the kairomone. We confirmed this finding by bioassays, in which D. lumholtzi was exposed to purified 5α-CPS sulfate from fish bile and showed that 10 pM 5α-CPS induces significantly elongated helmets and spines in relation to body length. These results identify on one hand another Daphnia species besides Daphnia magna, which is responding to this particular fish-borne kairomone, and on the other hand they reveal another defense that the kairomone induces besides diel vertical migration (DVM). Taken together a high evolutionary conservancy of the molecular mechanism behind inducible defenses in Daphnia spp. against fish can be deduced. It is reasonable to expect that 5α-CPS is involved in further predator—prey communication between Daphnia and fish, which may be of special ecological relevance with regard to invasive species as D. lumholtzi.
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Rzepa HS, Kuhn S. A data-oriented approach to making new molecules as a student experiment: artificial intelligence-enabling FAIR publication of NMR data for organic esters. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:93-103. [PMID: 34106480 DOI: 10.1002/mrc.5186] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/23/2021] [Accepted: 06/06/2021] [Indexed: 06/12/2023]
Abstract
The lack of machine-readable data is a major obstacle in the application of nuclear magnetic resonance (NMR) in artificial intelligence (AI). As a way to overcome this, a procedure for capturing primary NMR spectroscopic instrumental data annotated with rich metadata and publication in a Findable, Accessible, Interoperable and Reusable (FAIR) data repository is described as part of an undergraduate student laboratory experiment in a chemistry department. This couples the techniques of chemical synthesis of a never before made organic ester with illustration of modern data management practices and serves to raise student awareness of how FAIR data might improve research quality and replicability. Searches of the registered metadata are shown, which enable actionable finding and accessing of such data. The potential for re-use of the data in AI applications is discussed.
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Affiliation(s)
- Henry S Rzepa
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London, UK
| | - Stefan Kuhn
- School of Computer Science and Informatics, De Montfort University, Leicester, UK
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Moreira LMG, Junker J. Sampling CASE Application for the Quality Control of Published Natural Product Structures. Molecules 2021; 26:molecules26247543. [PMID: 34946623 PMCID: PMC8708086 DOI: 10.3390/molecules26247543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Revised: 09/06/2021] [Accepted: 10/19/2021] [Indexed: 12/03/2022] Open
Abstract
Structure elucidation with NMR correlation data is dicey, as there is no way to tell how ambiguous the data set is and how reliably it will define a constitution. Many different software tools for computer assisted structure elucidation (CASE) have become available over the past decades, all of which could ensure a better quality of the elucidation process, but their use is still not common. Since 2011, WebCocon has integrated the possibility to generate theoretical NMR correlation data, starting from an existing structural proposal, allowing this theoretical data then to be used for CASE. Now, WebCocon can also read the recently presented NMReDATA format, allowing for uncomplicated access to CASE with experimental data. With these capabilities, WebCocon presents itself as an easily accessible Web-Tool for the quality control of proposed new natural products. Results of this application to several molecules from literature are shown and demonstrate how CASE can contribute to improve the reliability of Structure elucidation with NMR correlation data.
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Kuhn S, Wieske LHE, Trevorrow P, Schober D, Schlörer NE, Nuzillard JM, Kessler P, Junker J, Herráez A, Farès C, Erdélyi M, Jeannerat D. NMReDATA: Tools and applications. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:792-803. [PMID: 33729627 DOI: 10.1002/mrc.5146] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2020] [Accepted: 03/05/2021] [Indexed: 06/12/2023]
Abstract
The nuclear magnetic resonance extracted data (NMReDATA) format has been proposed as a way to store, exchange, and disseminate nuclear magnetic resonance (NMR) data and physical and chemical metadata of chemical compounds. In this paper, we report on analytical workflows that take advantage of the uniform and standardized NMReDATA format. We also give access to a repository of sample data, which can serve for validating software packages that encode or decode files in NMReDATA format.
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Affiliation(s)
- Stefan Kuhn
- School of Computer Science and Informatics, De Montfort University, Leicester, UK
| | | | | | - Daniel Schober
- Ontology Development, MatterWaveSemantics, Südharz, Germany
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Halle (Saale), Germany
| | - Nils E Schlörer
- Department of Chemistry, University of Cologne, Köln, Germany
| | | | | | - Jochen Junker
- Center for Technological Development in Public Health, Fundação Oswaldo Cruz - CDTS, Rio de Janeiro - RJ, Brazil
| | - Angel Herráez
- Department of Systems Biology, Universidad de Alcalá, Alcalá de Henares, Spain
| | - Christophe Farès
- Abteilung NMR, Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Mate Erdélyi
- Department of Chemistry - BMC, Uppsala Universitet, Uppsala, Sweden
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Abstract
Phenotypic plasticity in defensive traits is an appropriate mechanism to cope with the variable hazard of a frequently changing predator spectrum. In the animal kingdom these so-called inducible defences cover the entire taxonomic range from protozoans to vertebrates. The inducible defensive traits range from behaviour, morphology, and life-history adaptations to the activation of specific immune systems in vertebrates. Inducible defences in prey species play important roles in the dynamics and functioning of food webs. Freshwater zooplankton show the most prominent examples of inducible defences triggered by chemical cues, so-called kairomones, released by predatory invertebrates and fish. The objective of this review is to highlight recent progress in research on inducible defences in freshwater zooplankton concerning behaviour, morphology, and life-history, as well as difficulties of studies conducted in a multipredator set up. Furthermore, we outline costs associated with the defences and discuss difficulties as well as the progress made in characterizing defence-inducing cues. Finally, we aim to indicate further possible routes in this field of research and provide a comprehensive table of inducible defences with respect to both prey and predator species.
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Trevorrow P, Jeannerat D. Reporting on the first NMReDATA Symposium, 26 September 2019, Porto, Portugal. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2020; 58:218-222. [PMID: 31800114 DOI: 10.1002/mrc.4977] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 11/27/2019] [Indexed: 06/10/2023]
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Hahn MA, Effertz C, Bigler L, von Elert E. 5α-cyprinol sulfate, a bile salt from fish, induces diel vertical migration in Daphnia. eLife 2019; 8:44791. [PMID: 31045492 PMCID: PMC6559785 DOI: 10.7554/elife.44791] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Accepted: 05/02/2019] [Indexed: 01/17/2023] Open
Abstract
Prey are under selection to minimize predation losses. In aquatic environments, many prey use chemical cues released by predators, which initiate predator avoidance. A prominent example of behavioral predator-avoidance constitutes diel vertical migration (DVM) in the freshwater microcrustacean Daphnia spp., which is induced by chemical cues (kairomones) released by planktivorous fish. In a bioassay-guided approach using liquid chromatography and mass spectrometry, we identified the kairomone from fish incubation water as 5α-cyprinol sulfate inducing DVM in Daphnia at picomolar concentrations. The role of 5α-cyprinol sulfate in lipid digestion in fish explains why from an evolutionary perspective fish has not stopped releasing 5α-cyprinol sulfate despite the disadvantages for the releaser. The identification of the DVM-inducing kairomone enables investigating its spatial and temporal distribution and the underlying molecular mechanism of its perception. Furthermore, it allows to test if fish-mediated inducible defenses in other aquatic invertebrates are triggered by the same compound.
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Affiliation(s)
- Meike Anika Hahn
- Aquatic Chemical Ecology, Department of Biology, University of Koeln, Koeln, Germany
| | - Christoph Effertz
- Aquatic Chemical Ecology, Department of Biology, University of Koeln, Koeln, Germany
| | - Laurent Bigler
- Department of Chemistry, University of Zurich, Zurich, Switzerland
| | - Eric von Elert
- Aquatic Chemical Ecology, Department of Biology, University of Koeln, Koeln, Germany
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