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Feizollah S, Tardif CL. High-resolution diffusion-weighted imaging at 7 Tesla: single-shot readout trajectories and their impact on signal-to-noise ratio, spatial resolution and accuracy. Neuroimage 2023; 274:120159. [PMID: 37150332 DOI: 10.1016/j.neuroimage.2023.120159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 03/31/2023] [Accepted: 05/04/2023] [Indexed: 05/09/2023] Open
Abstract
Diffusion MRI (dMRI) is a valuable imaging technique to study the connectivity and microstructure of the brain in vivo. However, the resolution of dMRI is limited by the low signal-to-noise ratio (SNR) of this technique. Various multi-shot acquisition strategies have been developed to achieve sub-millimeter resolution, but they require long scan times which can be restricting for patient scans. Alternatively, the SNR of single-shot acquisitions can be increased by using a spiral readout trajectory to minimize the sequence echo time. Imaging at ultra-high fields (UHF) could further increase the SNR of single-shot dMRI; however, the shorter T2* of brain tissue and the greater field non-uniformities at UHFs will degrade image quality, causing image blurring, distortions, and signal loss. In this study, we investigated the trade-off between the SNR and resolution of different k-space trajectories, including echo planar imaging (EPI), partial Fourier EPI, and spiral trajectories, over a range of dMRI resolutions at 7T. The effective resolution, spatial specificity and sharpening effect were measured from the point spread function (PSF) of the simulated diffusion sequences for a nominal resolution range of 0.6-1.8 mm. In-vivo partial brain scans at a nominal resolution of 1.5 mm isotropic were acquired using the three readout trajectories to validate the simulation results. Field probes were used to measure dynamic magnetic fields offline up to the 3rd order of spherical harmonics. Image reconstruction was performed using static ΔB0 field maps and the measured trajectories to correct image distortions and artifacts, leaving T2* effects as the primary source of blurring. The effective resolution was examined in fractional anisotropy (FA) maps calculated from a multi-shell dataset with b-values of 300, 1000, and 2000 s/mm2 in 5, 16, and 48 directions, respectively. In-vivo scans at nominal resolutions of 1, 1.2, and 1.5 mm were acquired and the SNR of the different trajectories calculated using the multiple replica method to investigate the SNR. Finally, in-vivo whole brain scans with an effective resolution of 1.5 mm isotropic were acquired to explore the SNR and efficiency of different trajectories at a matching effective resolution. FA and intra-cellular volume fraction (ICVF) maps calculated using neurite orientation dispersion and density imaging (NODDI) were used for the comparison. The simulations and in vivo imaging results showed that for matching nominal resolutions, EPI trajectories had the highest specificity and effective resolution with maximum image sharpening effect. However, spirals have a significantly higher SNR, in particular at higher resolutions and even when the effective image resolutions are matched. Overall, this work shows that the higher SNR of single-shot spiral trajectories at 7T allows us to achieve higher effective resolutions compared to EPI and PF-EPI to map the microstructure and connectivity of small brain structures.
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Affiliation(s)
- Sajjad Feizollah
- Department of Neurology and Neurosurgery, Faculty of Medicine and Health Sciences, McGill University, 3801 Rue University, Montreal, QC, Canada; McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, 3801 Rue University, Montreal, QC, Canada.
| | - Christine L Tardif
- Department of Neurology and Neurosurgery, Faculty of Medicine and Health Sciences, McGill University, 3801 Rue University, Montreal, QC, Canada; McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, 3801 Rue University, Montreal, QC, Canada; Department of Biomedical Engineering, Faculty of Medicine and Health Sciences, McGill University, Duff Medical Building, 3775 Rue University, Suite 316, Montreal, QC, Canada.
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Hottat NA, Van Pachterbeke C, Vanden Houte K, Denolin V, Jani JC, Cannie MM. Magnetic resonance scoring system for assessment of adnexal masses: added value of diffusion-weighted imaging including apparent diffusion coefficient map. ULTRASOUND IN OBSTETRICS & GYNECOLOGY : THE OFFICIAL JOURNAL OF THE INTERNATIONAL SOCIETY OF ULTRASOUND IN OBSTETRICS AND GYNECOLOGY 2021; 57:478-487. [PMID: 32438461 DOI: 10.1002/uog.22090] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 05/01/2020] [Accepted: 05/07/2020] [Indexed: 06/11/2023]
Abstract
OBJECTIVES To validate prospectively the ADNEX magnetic resonance (MR) scoring system to assess adnexal masses and to evaluate a new, modified ADNEX MR scoring system that incorporates diffusion-weighted imaging (DWI) with apparent diffusion coefficient (ADC) mapping. METHODS Between January 2015 and September 2018, 323 consecutive women with adnexal masses diagnosed on transvaginal ultrasound (TVS) underwent standardized MR imaging (MRI) including diffusion and dynamic contrast-enhanced sequences. Of these, 131 underwent subsequent surgery. For interpretation of the MRI examinations, we applied the five-category ADNEX MR scoring system, along with a modified scoring system including DWI with ADC mapping. For both scoring systems, a score was given for all adnexal masses. Histological diagnosis was considered as the gold standard and lesions were classified as benign or malignant. The difference between the predictive values for diagnosing malignancy of the classical and modified scoring systems was assessed on the basis of the areas under the receiver-operating-characteristics (AUC) curves. The sensitivity and specificity for diagnosing malignancy of each score were also calculated. RESULTS Among the 131 women with adnexal mass(es) diagnosed on TVS who underwent MRI and subsequent surgery, the surgery revealed 161 adnexal masses in 126 women; five women had no mass. Histological examination confirmed 161 adnexal masses, of which all had been detected on MRI: 32 malignant tumors, 15 borderline tumors, which were classified as part of the malignant group (n = 47), and 114 benign lesions. The AUC for prediction of a malignant lesion was 0.938 (95% CI, 0.902-0.975) using the classical ADNEX MR scoring system and 0.974 (95% CI, 0.953-0.996) using the modified scoring system. Pairwise comparison of these AUCs revealed a significant difference (P = 0.0032). The sensitivity and specificity for diagnosing malignancy with an ADNEX MR score of 4 or more were 95.5% and 86.6%, respectively, using the classic scoring system, and 95.7% and 93.3%, respectively, using the modified scoring system. CONCLUSION DWI with ADC mapping could be integrated into the ADNEX MR scoring system to improve specificity, thereby potentially optimizing clinical management by avoiding unnecessary surgery. © 2020 International Society of Ultrasound in Obstetrics and Gynecology.
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Affiliation(s)
- N A Hottat
- Department of Radiology, University Hospital Brugmann, Université Libre de Bruxelles, Brussels, Belgium
- Department of Radiology, UZ Brussel, Vrije Universiteit Brussel, Brussels, Belgium
| | - C Van Pachterbeke
- Department of Obstetrics and Gynecology, University Hospital Brugmann, Université Libre de Bruxelles, Brussels, Belgium
| | - K Vanden Houte
- Department of Pathology, University Hospital Brugmann, Université Libre de Bruxelles, Brussels, Belgium
| | - V Denolin
- Siemens Healthineers, Beersel, Belgium
| | - J C Jani
- Department of Obstetrics and Gynecology, University Hospital Brugmann, Université Libre de Bruxelles, Brussels, Belgium
| | - M M Cannie
- Department of Radiology, University Hospital Brugmann, Université Libre de Bruxelles, Brussels, Belgium
- Department of Radiology, UZ Brussel, Vrije Universiteit Brussel, Brussels, Belgium
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Lukač S, Kojić M, Stojanović S. The importance of diffusion weighted magnetic resonance imaging in differentiation of malignant and benign ovarian lesions. MEDICINSKI PODMLADAK 2019. [DOI: 10.5937/mp70-17889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022] Open
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Marques do Carmo D, Costa MH. Online approximation of the multichannel Wiener filter with preservation of interaural level difference for binaural hearing-aids. Comput Biol Med 2018; 95:188-197. [PMID: 29505947 DOI: 10.1016/j.compbiomed.2018.02.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Revised: 02/06/2018] [Accepted: 02/20/2018] [Indexed: 10/18/2022]
Abstract
This work presents an online approximation method for the multichannel Wiener filter (MWF) noise reduction technique with preservation of the noise interaural level difference (ILD) for binaural hearing-aids. The steepest descent method is applied to a previously proposed MWF-ILD cost function to both approximate the optimal linear estimator of the desired speech and keep the subjective perception of the original acoustic scenario. The computational cost of the resulting algorithm is estimated in terms of multiply and accumulate operations, whose number can be controlled by setting the number of iterations at each time frame. Simulation results for the particular case of one speech and one-directional noise source show that the proposed method increases the signal-to-noise ratio SNR of the originally acquired speech by up to 16.9 dB in the assessed scenarios. As compared to the online implementation of the conventional MWF technique, the proposed technique provides a reduction of up to 7 dB in the noise ILD error at the price of a reduction of up 3 dB in the output SNR. Subjective experiments with volunteers complement these objective measures with psychoacoustic results, which corroborate the expected spatial preservation of the original acoustic scenario. The proposed method allows practical online implementation of the MWF-ILD noise reduction technique under constrained computational resources. Predicted SNR improvements from 12 dB to 16.9 dB can be obtained in application-specific integrated circuits for hearing-aids and state-of-the-art digital signal processors.
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Affiliation(s)
- Diego Marques do Carmo
- Department of Electrical and Electronic Engineering, Federal University of Santa Catarina, Florianópolis-SC, 88040-900, Brazil.
| | - Márcio Holsbach Costa
- Department of Electrical and Electronic Engineering, Federal University of Santa Catarina, Florianópolis-SC, 88040-900, Brazil.
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Diffusion MRI of the human brain at ultra-high field (UHF): A review. Neuroimage 2017; 168:172-180. [PMID: 28428047 DOI: 10.1016/j.neuroimage.2017.04.037] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2016] [Revised: 04/14/2017] [Accepted: 04/15/2017] [Indexed: 11/20/2022] Open
Abstract
The continued drive towards MRI scanners operating at increasingly higher main magnetic fields is primarily motivated by the maxim that more teslas mean more signal and lead to better images. This promise of increased signal, which cannot easily be achieved in other ways, encourages efforts to overcome the inextricable technical challenges which accompany this endeavor. Unlike for many applications, however, diffusion imaging is not currently able to directly reap these potential signal gains - at the time of writing it seems fair to say that, for matched gradient and RF hardware, the majority of diffusion images acquired at 7T, while comparable in quality to those achievable at 3T, do not demonstrate a clear advantage over what can be obtained at lower field. This does not mean that diffusion imaging at UHF is not a worthwhile pursuit - but more a reflection of the fact that the associated challenges are manifold - and converting the potential of higher field strengths into 'better' diffusion imaging is by no means a straightforward task. This article attempts to summarize the specific reasons that make diffusion imaging at UHF more complicated than one might expect, and to highlight the range of developments that have already been made which have enabled diffusion images of excellent quality to be acquired at 7T.
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Setsompop K, Feinberg DA, Polimeni JR. Rapid brain MRI acquisition techniques at ultra-high fields. NMR IN BIOMEDICINE 2016; 29:1198-221. [PMID: 26835884 PMCID: PMC5245168 DOI: 10.1002/nbm.3478] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Revised: 11/28/2015] [Accepted: 12/02/2015] [Indexed: 05/04/2023]
Abstract
Ultra-high-field MRI provides large increases in signal-to-noise ratio (SNR) as well as enhancement of several contrast mechanisms in both structural and functional imaging. Combined, these gains result in a substantial boost in contrast-to-noise ratio that can be exploited for higher-spatial-resolution imaging to extract finer-scale information about the brain. With increased spatial resolution, however, there is a concurrent increased image-encoding burden that can cause unacceptably long scan times for structural imaging and slow temporal sampling of the hemodynamic response in functional MRI - particularly when whole-brain imaging is desired. To address this issue, new directions of imaging technology development - such as the move from conventional 2D slice-by-slice imaging to more efficient simultaneous multislice (SMS) or multiband imaging (which can be viewed as "pseudo-3D" encoding) as well as full 3D imaging - have provided dramatic improvements in acquisition speed. Such imaging paradigms provide higher SNR efficiency as well as improved encoding efficiency. Moreover, SMS and 3D imaging can make better use of coil sensitivity information in multichannel receiver arrays used for parallel imaging acquisitions through controlled aliasing in multiple spatial directions. This has enabled unprecedented acceleration factors of an order of magnitude or higher in these imaging acquisition schemes, with low image artifact levels and high SNR. Here we review the latest developments of SMS and 3D imaging methods and related technologies at ultra-high field for rapid high-resolution functional and structural imaging of the brain. Copyright © 2016 John Wiley & Sons, Ltd.
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Affiliation(s)
- Kawin Setsompop
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA
- Department of Radiology, Harvard Medical School, Boston, MA, USA
| | - David A. Feinberg
- Helen Wills Institute for Neuroscience, University of California, Berkeley, CA, USA
- Advanced MRI Technologies, Sebastopol, CA, USA
| | - Jonathan R. Polimeni
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA
- Department of Radiology, Harvard Medical School, Boston, MA, USA
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Vu AT, Auerbach E, Lenglet C, Moeller S, Sotiropoulos SN, Jbabdi S, Andersson J, Yacoub E, Ugurbil K. High resolution whole brain diffusion imaging at 7T for the Human Connectome Project. Neuroimage 2015; 122:318-31. [PMID: 26260428 DOI: 10.1016/j.neuroimage.2015.08.004] [Citation(s) in RCA: 137] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2015] [Revised: 07/31/2015] [Accepted: 08/01/2015] [Indexed: 11/16/2022] Open
Abstract
Mapping structural connectivity in healthy adults for the Human Connectome Project (HCP) benefits from high quality, high resolution, multiband (MB)-accelerated whole brain diffusion MRI (dMRI). Acquiring such data at ultrahigh fields (7T and above) can improve intrinsic signal-to-noise ratio (SNR), but suffers from shorter T2 and T2(⁎) relaxation times, increased B1(+) inhomogeneity (resulting in signal loss in cerebellar and temporal lobe regions), and increased power deposition (i.e. specific absorption rate (SAR)), thereby limiting our ability to reduce the repetition time (TR). Here, we present recent developments and optimizations in 7T image acquisitions for the HCP that allow us to efficiently obtain high quality, high resolution whole brain in-vivo dMRI data at 7T. These data show spatial details typically seen only in ex-vivo studies and complement already very high quality 3T HCP data in the same subjects. The advances are the result of intensive pilot studies aimed at mitigating the limitations of dMRI at 7T. The data quality and methods described here are representative of the datasets that will be made freely available to the community in 2015.
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Affiliation(s)
- A T Vu
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455, USA.
| | - E Auerbach
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455, USA
| | - C Lenglet
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455, USA
| | - S Moeller
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455, USA
| | - S N Sotiropoulos
- Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK
| | - S Jbabdi
- Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK
| | - J Andersson
- Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK
| | - E Yacoub
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455, USA
| | - K Ugurbil
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455, USA
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Braun J, Guo J, Lützkendorf R, Stadler J, Papazoglou S, Hirsch S, Sack I, Bernarding J. High-resolution mechanical imaging of the human brain by three-dimensional multifrequency magnetic resonance elastography at 7T. Neuroimage 2014; 90:308-14. [DOI: 10.1016/j.neuroimage.2013.12.032] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 11/05/2013] [Accepted: 12/14/2013] [Indexed: 12/15/2022] Open
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Pearls and pitfalls in MRI of gynecologic malignancy with diffusion-weighted technique. AJR Am J Roentgenol 2013; 200:261-76. [PMID: 23345345 DOI: 10.2214/ajr.12.9713] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
OBJECTIVE Developments in MRI techniques have increased the role of MRI in assessment of the pelvis in women. The aims of this review are a short overview of pelvic MRI with an emphasis on diffusion-weighted MRI (DWI) and presentation of a practical approach that includes the pearls and pitfalls of DWI. CONCLUSION DWI provides indispensable information in the evaluation of gynecologic malignancies. Prudent application of this technique requires knowledge of the optimal protocols and pitfalls in interpretation.
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