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Boudreau M, Karakuzu A, Cohen-Adad J, Bozkurt E, Carr M, Castellaro M, Concha L, Doneva M, Dual SA, Ensworth A, Foias A, Fortier V, Gabr RE, Gilbert G, Glide-Hurst CK, Grech-Sollars M, Hu S, Jalnefjord O, Jovicich J, Keskin K, Koken P, Kolokotronis A, Kukran S, Lee NG, Levesque IR, Li B, Ma D, Mädler B, Maforo NG, Near J, Pasaye E, Ramirez-Manzanares A, Statton B, Stehning C, Tambalo S, Tian Y, Wang C, Weiss K, Zakariaei N, Zhang S, Zhao Z, Stikov N. Repeat it without me: Crowdsourcing the T 1 mapping common ground via the ISMRM reproducibility challenge. Magn Reson Med 2024; 92:1115-1127. [PMID: 38730562 DOI: 10.1002/mrm.30111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 03/21/2024] [Accepted: 03/23/2024] [Indexed: 05/13/2024]
Abstract
PURPOSE T1 mapping is a widely used quantitative MRI technique, but its tissue-specific values remain inconsistent across protocols, sites, and vendors. The ISMRM Reproducible Research and Quantitative MR study groups jointly launched a challenge to assess the reproducibility of a well-established inversion-recovery T1 mapping technique, using acquisition details from a seminal T1 mapping paper on a standardized phantom and in human brains. METHODS The challenge used the acquisition protocol from Barral et al. (2010). Researchers collected T1 mapping data on the ISMRM/NIST phantom and/or in human brains. Data submission, pipeline development, and analysis were conducted using open-source platforms. Intersubmission and intrasubmission comparisons were performed. RESULTS Eighteen submissions (39 phantom and 56 human datasets) on scanners by three MRI vendors were collected at 3 T (except one, at 0.35 T). The mean coefficient of variation was 6.1% for intersubmission phantom measurements, and 2.9% for intrasubmission measurements. For humans, the intersubmission/intrasubmission coefficient of variation was 5.9/3.2% in the genu and 16/6.9% in the cortex. An interactive dashboard for data visualization was also developed: https://rrsg2020.dashboards.neurolibre.org. CONCLUSION The T1 intersubmission variability was twice as high as the intrasubmission variability in both phantoms and human brains, indicating that the acquisition details in the original paper were insufficient to reproduce a quantitative MRI protocol. This study reports the inherent uncertainty in T1 measures across independent research groups, bringing us one step closer to a practical clinical baseline of T1 variations in vivo.
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Affiliation(s)
- Mathieu Boudreau
- NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada
- Montreal Heart Institute, Montréal, Quebec, Canada
| | - Agah Karakuzu
- NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada
| | - Julien Cohen-Adad
- NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada
- Montreal Heart Institute, Montréal, Quebec, Canada
- Unité de Neuroimagerie Fonctionnelle, Centre de Recherche de l'Institut Universitaire de Gériatrie de Montréal, Montréal, Quebec, Canada
- Mila-Quebec AI Institute, Montréal, Québec, Canada
- Centre de Recherche du CHU Sainte-Justine, Université de Montréal, Montréal, Québec, Canada
| | - Ecem Bozkurt
- Magnetic Resonance Engineering Laboratory, University of Southern California, Los Angeles, California, USA
| | - Madeline Carr
- Medical Physics, Ingham Institute for Applied Medical Research, Liverpool, Australia
- Department of Medical Physics, Liverpool and Macarthur Cancer Therapy Centers, Liverpool, Australia
| | - Marco Castellaro
- Department of Information Engineering, University of Padova, Padova, Italy
| | - Luis Concha
- Institute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico
| | | | - Seraina A Dual
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Alex Ensworth
- Medical Physics Unit, McGill University, Montréal, Québec, Canada
- University of British Columbia, Vancouver, British Columbia, Canada
| | - Alexandru Foias
- NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada
| | - Véronique Fortier
- Department of Medical Imaging, McGill University Health Center, Montréal, Québec, Canada
- Department of Radiology, McGill University, Montréal, Québec, Canada
| | - Refaat E Gabr
- Department of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, McGovern Medical School, Houston, Texas, USA
| | | | - Carri K Glide-Hurst
- Department of Human Oncology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Matthew Grech-Sollars
- Center for Medical Image Computing, Department of Computer Science, University College London, London, UK
- Lysholm Department of Neuroradiology, National Hospital for Neurology and Neurosurgery, University College London Hospitals NHS Foundation Trust, London, UK
| | - Siyuan Hu
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Oscar Jalnefjord
- Department of Medical Radiation Sciences, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Medical Physics and Biomedical Engineering, Sahlgrenska University Hospital, Gothenburg, Sweden
| | - Jorge Jovicich
- Center for Mind/Brain Sciences, University of Trento, Trento, Italy
| | - Kübra Keskin
- Magnetic Resonance Engineering Laboratory, University of Southern California, Los Angeles, California, USA
| | | | - Anastasia Kolokotronis
- Medical Physics Unit, McGill University, Montréal, Québec, Canada
- Hopital Maisonneuve-Rosemont, Montréal, Québec, Canada
| | - Simran Kukran
- Bioengineering, Imperial College London, London, UK
- Radiotherapy and Imaging, Institute of Cancer Research, Imperial College London, London, UK
| | - Nam G Lee
- Magnetic Resonance Engineering Laboratory, University of Southern California, Los Angeles, California, USA
| | - Ives R Levesque
- Medical Physics Unit, McGill University, Montréal, Québec, Canada
- Research Institute of the McGill University Health Center, Montréal, Québec, Canada
| | - Bochao Li
- Magnetic Resonance Engineering Laboratory, University of Southern California, Los Angeles, California, USA
| | - Dan Ma
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | | | - Nyasha G Maforo
- Department of Radiological Sciences, University of California Los Angeles, Los Angeles, California, USA
- Physics and Biology in Medicine IDP, University of California Los Angeles, Los Angeles, California, USA
| | - Jamie Near
- Douglas Brain Imaging Center, Montréal, Québec, Canada
- Sunnybrook Research Institute, Toronto, Ontario, Canada
| | - Erick Pasaye
- Institute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico
| | | | - Ben Statton
- Medical Research Council, London Institute of Medical Sciences, Imperial College London, London, UK
| | | | - Stefano Tambalo
- Center for Mind/Brain Sciences, University of Trento, Trento, Italy
| | - Ye Tian
- Magnetic Resonance Engineering Laboratory, University of Southern California, Los Angeles, California, USA
| | - Chenyang Wang
- Department of Radiation Oncology-CNS Service, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
| | - Kilian Weiss
- Clinical Science, Philips Healthcare, Hamburg, Germany
| | - Niloufar Zakariaei
- Department of Biomedical Engineering, University of British Columbia, Vancouver, British Columbia, Canada
| | - Shuo Zhang
- Clinical Science, Philips Healthcare, Hamburg, Germany
| | - Ziwei Zhao
- Magnetic Resonance Engineering Laboratory, University of Southern California, Los Angeles, California, USA
| | - Nikola Stikov
- NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada
- Montreal Heart Institute, Montréal, Quebec, Canada
- Center for Advanced Interdisciplinary Research, Ss. Cyril and Methodius University, Skopje, North Macedonia
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Choi Y, Ko JS, Park JE, Jeong G, Seo M, Jun Y, Fujita S, Bilgic B. Beyond the Conventional Structural MRI: Clinical Application of Deep Learning Image Reconstruction and Synthetic MRI of the Brain. Invest Radiol 2024:00004424-990000000-00248. [PMID: 39159333 DOI: 10.1097/rli.0000000000001114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/21/2024]
Abstract
ABSTRACT Recent technological advancements have revolutionized routine brain magnetic resonance imaging (MRI) sequences, offering enhanced diagnostic capabilities in intracranial disease evaluation. This review explores 2 pivotal breakthrough areas: deep learning reconstruction (DLR) and quantitative MRI techniques beyond conventional structural imaging. DLR using deep neural networks facilitates accelerated imaging with improved signal-to-noise ratio and spatial resolution, enhancing image quality with short scan times. DLR focuses on supervised learning applied to clinical implementation and applications. Quantitative MRI techniques, exemplified by 2D multidynamic multiecho, 3D quantification using interleaved Look-Locker acquisition sequences with T2 preparation pulses, and magnetic resonance fingerprinting, enable precise calculation of brain-tissue parameters and further advance diagnostic accuracy and efficiency. Potential DLR instabilities and quantification and bias limitations will be discussed. This review underscores the synergistic potential of DLR and quantitative MRI, offering prospects for improved brain imaging beyond conventional methods.
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Affiliation(s)
- Yangsean Choi
- From the Department of Radiology and Research Institute of Radiology, Asan Medical Center, Seoul, Republic of Korea (Y.C., J.S.K., J.E.P.); AIRS Medical LLC, Seoul, Republic of Korea (G.J.); Department of Radiology, Seoul St. Mary's Hospital, The Catholic University of Korea, Seoul, Republic of Korea (M.S.); Department of Radiology, Harvard Medical School, Boston, MA (Y.J., S.F., B.B.); Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA (Y.J., S.F., B.B.); and Harvard/MIT Health Sciences and Technology, Cambridge, MA (B.B.)
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3
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Gaspar AS, Silva NA, Ferreira AM, Nunes RG. Repeatability of Open-MOLLI: An open-source inversion recovery myocardial T1 mapping sequence for fast prototyping. Magn Reson Med 2024; 92:741-750. [PMID: 38523462 DOI: 10.1002/mrm.30080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 01/27/2024] [Accepted: 02/20/2024] [Indexed: 03/26/2024]
Abstract
PURPOSE To develop an open-source prototype of myocardial T1 mapping (Open-MOLLI) to improve accessibility to cardiac T1 mapping and evaluate its repeatability. With Open-MOLLI, we aim to enable faster implementation and testing of sequence modifications and to facilitate inter-scanner and cross-vendor reproducibility studies. METHODS Open-MOLLI is an inversion-recovery sequence using a balanced SSFP (bSSFP) readout, with inversion and triggering schemes based on the 5(3)3 MOLLI sequence, developed in Pulseq. Open-MOLLI and MOLLI sequences were acquired in the ISMRM/NIST phantom and 21 healthy volunteers. In 18 of those subjects, Open-MOLLI and MOLLI were repeated in the same session (test-retest). RESULTS Phantom T1 values were comparable between methods, specifically for the vial with reference T1 value most similar to healthy myocardium T1 (T1vial3 = 1027 ms): T1MOLLI = 1011 ± 24 ms versus T1Open-MOLLI = 1009 ± 20 ms. In vivo T1 estimates were similar between Open-MOLLI and MOLLI (T1MOLLI = 1004 ± 33 ms vs. T1Open-MOLLI = 998 ± 52 ms), with a mean difference of -17 ms (p = 0.20), despite noisier Open-MOLLI weighted images and maps. Repeatability measures were slightly higher for Open-MOLLI (RCMOLLI = 3.0% vs. RCOpen-MOLLI = 4.4%). CONCLUSION The open-source sequence Open-MOLLI can be used for T1 mapping in vivo with similar mean T1 values to the MOLLI method. Open-MOLLI increases the accessibility to cardiac T1 mapping, providing also a base sequence to which further improvements can easily be added and tested.
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Affiliation(s)
- Andreia S Gaspar
- Instituto de Sistemas e Robótica-Lisboa and Departamento de Bioengenharia, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
| | - Nuno A Silva
- Hospital da Luz Learning Health, Luz Saúde, Lisboa, Portugal
| | - António M Ferreira
- Serviço de Cardiologia, Hospital de Santa Cruz, Centro Hospitalar Lisboa Ocidental, Lisboa, Portugal
- Unidade de Imagiologia Cardíaca Avançada, Hospital da Luz, Lisboa, Portugal
| | - Rita G Nunes
- Instituto de Sistemas e Robótica-Lisboa and Departamento de Bioengenharia, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
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4
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Wallstein N, Pampel A, Jäger C, Müller R, Möller HE. Anisotropic longitudinal water proton relaxation in white matter investigated ex vivo in porcine spinal cord with sample rotation. Sci Rep 2024; 14:12961. [PMID: 38839823 PMCID: PMC11153615 DOI: 10.1038/s41598-024-63483-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 05/29/2024] [Indexed: 06/07/2024] Open
Abstract
A variation of the longitudinal relaxation time T 1 in brain regions that differ in their main fiber direction has been occasionally reported, however, with inconsistent results. Goal of the present study was to clarify such inconsistencies, and the origin of potential T 1 orientation dependence, by applying direct sample rotation and comparing the results from different approaches to measure T 1 . A section of fixed porcine spinal cord white matter was investigated at 3 T with variation of the fiber-to-field angle θ FB . The experiments included one-dimensional inversion-recovery, MP2RAGE, and variable flip-angle T 1 measurements at 22 °C and 36 °C as well as magnetization-transfer (MT) and diffusion-weighted acquisitions. Depending on the technique, different degrees of T 1 anisotropy (between 2 and 10%) were observed as well as different dependencies on θ FB (monotonic variation or T 1 maximum at 30-40°). More pronounced anisotropy was obtained with techniques that are more sensitive to MT effects. Furthermore, strong correlations of θ FB -dependent MT saturation and T 1 were found. A comprehensive analysis based on the binary spin-bath model for MT revealed an interplay of several orientation-dependent parameters, including the transverse relaxation times of the macromolecular and the water pool as well as the longitudinal relaxation time of the macromolecular pool.
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Affiliation(s)
- Niklas Wallstein
- NMR Methods & Development Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
| | - André Pampel
- NMR Methods & Development Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Carsten Jäger
- Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Paul Flechsig Institute-Center of Neuropathology and Brain Research, Medical Faculty, Leipzig University, Leipzig, Germany
| | - Roland Müller
- NMR Methods & Development Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Harald E Möller
- NMR Methods & Development Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Felix Bloch Institute for Solid State Physics, Leipzig University, Leipzig, Germany
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5
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Fujita S, Gagoski B, Hwang KP, Hagiwara A, Warntjes M, Fukunaga I, Uchida W, Saito Y, Sekine T, Tachibana R, Muroi T, Akatsu T, Kasahara A, Sato R, Ueyama T, Andica C, Kamagata K, Amemiya S, Takao H, Hoshino Y, Tomizawa Y, Yokoyama K, Bilgic B, Hattori N, Abe O, Aoki S. Cross-vendor multiparametric mapping of the human brain using 3D-QALAS: A multicenter and multivendor study. Magn Reson Med 2024; 91:1863-1875. [PMID: 38192263 DOI: 10.1002/mrm.29939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 11/06/2023] [Accepted: 11/06/2023] [Indexed: 01/10/2024]
Abstract
PURPOSE To evaluate a vendor-agnostic multiparametric mapping scheme based on 3D quantification using an interleaved Look-Locker acquisition sequence with a T2 preparation pulse (3D-QALAS) for whole-brain T1, T2, and proton density (PD) mapping. METHODS This prospective, multi-institutional study was conducted between September 2021 and February 2022 using five different 3T systems from four prominent MRI vendors. The accuracy of this technique was evaluated using a standardized MRI system phantom. Intra-scanner repeatability and inter-vendor reproducibility of T1, T2, and PD values were evaluated in 10 healthy volunteers (6 men; mean age ± SD, 28.0 ± 5.6 y) who underwent scan-rescan sessions on each scanner (total scans = 100). To evaluate the feasibility of 3D-QALAS, nine patients with multiple sclerosis (nine women; mean age ± SD, 48.2 ± 11.5 y) underwent imaging examination on two 3T MRI systems from different manufacturers. RESULTS Quantitative maps obtained with 3D-QALAS showed high linearity (R2 = 0.998 and 0.998 for T1 and T2, respectively) with respect to reference measurements. The mean intra-scanner coefficients of variation for each scanner and structure ranged from 0.4% to 2.6%. The mean structure-wise test-retest repeatabilities were 1.6%, 1.1%, and 0.7% for T1, T2, and PD, respectively. Overall, high inter-vendor reproducibility was observed for all parameter maps and all structure measurements, including white matter lesions in patients with multiple sclerosis. CONCLUSION The vendor-agnostic multiparametric mapping technique 3D-QALAS provided reproducible measurements of T1, T2, and PD for human tissues within a typical physiological range using 3T scanners from four different MRI manufacturers.
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Affiliation(s)
- Shohei Fujita
- Department of Radiology, Juntendo University, Tokyo, Japan
- Department of Radiology, The University of Tokyo, Tokyo, Japan
- Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, USA
- Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA
| | - Borjan Gagoski
- Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA
- Fetal Neonatal Neuroimaging and Developmental Science Center, Boston Children's Hospital, Boston, Massachusetts, USA
| | - Ken-Pin Hwang
- Department of Imaging Physics, MD Anderson Cancer Center, Houston, Texas, USA
| | | | - Marcel Warntjes
- SyntheticMR, Linköping, Sweden
- Center for Medical Imaging Science and Visualization (CMIV), Linköping University, Linköping, Sweden
| | - Issei Fukunaga
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Wataru Uchida
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Yuya Saito
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Towa Sekine
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Rina Tachibana
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Tomoya Muroi
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Toshiya Akatsu
- Department of Radiology, Juntendo University, Tokyo, Japan
| | | | - Ryo Sato
- Department of Radiology, The University of Tokyo, Tokyo, Japan
| | - Tsuyoshi Ueyama
- Department of Radiology, The University of Tokyo, Tokyo, Japan
| | - Christina Andica
- Department of Radiology, Juntendo University, Tokyo, Japan
- Faculty of Health Data Science, Juntendo University, Chiba, Japan
| | - Koji Kamagata
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Shiori Amemiya
- Department of Radiology, The University of Tokyo, Tokyo, Japan
| | - Hidemasa Takao
- Department of Radiology, The University of Tokyo, Tokyo, Japan
| | | | - Yuji Tomizawa
- Department of Neurology, Juntendo University, Tokyo, Japan
| | | | - Berkin Bilgic
- Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, USA
- Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA
- Harvard/MIT Health Sciences and Technology, Cambridge, Massachusetts, USA
| | | | - Osamu Abe
- Department of Radiology, The University of Tokyo, Tokyo, Japan
| | - Shigeki Aoki
- Department of Radiology, Juntendo University, Tokyo, Japan
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Romascano D, Piredda GF, Caneschi S, Hilbert T, Corredor R, Maréchal B, Kober T, Ledoux JB, Fornari E, Hagmann P, Denervaud S. Normative volumes and relaxation times at 3T during brain development. Sci Data 2024; 11:429. [PMID: 38664431 PMCID: PMC11045735 DOI: 10.1038/s41597-024-03267-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 04/16/2024] [Indexed: 04/28/2024] Open
Abstract
While research has unveiled and quantified brain markers of abnormal neurodevelopment, clinicians still work with qualitative metrics for MRI brain investigation. The purpose of the current article is to bridge the knowledge gap between case-control cohort studies and individual patient care. Here, we provide a unique dataset of seventy-three 3-to-17 years-old healthy subjects acquired with a 6-minute MRI protocol encompassing T1 and T2 relaxation quantitative sequence that can be readily implemented in the clinical setting; MP2RAGE for T1 mapping and the prototype sequence GRAPPATINI for T2 mapping. White matter and grey matter volumes were automatically quantified. We further provide normative developmental curves based on these two imaging sequences; T1, T2 and volume normative ranges with respect to age were computed, for each ROI of a pediatric brain atlas. This open-source dataset provides normative values allowing to position individual patients acquired with the same protocol on the brain maturation curve and as such provides potentially useful quantitative biomarkers facilitating precise and personalized care.
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Affiliation(s)
- David Romascano
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland.
- Support Center for Advanced Neuroimaging (SCAN), University Institute of Diagnostic and Interventional Neuroradiology, Inselspital, Bern, Switzerland.
- Danish Research Centre for Magnetic Resonance, Copenhagen University Hospital Amager and Hvidovre, Hvidovre, Denmark.
| | - Gian Franco Piredda
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
- CIBM Center for Biomedical Imaging, Lausanne, Switzerland
| | - Samuele Caneschi
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
- Signal Processing laboratory 5 (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Tom Hilbert
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
- Signal Processing laboratory 5 (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Ricardo Corredor
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
- Signal Processing laboratory 5 (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Bénédicte Maréchal
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
- Signal Processing laboratory 5 (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Tobias Kober
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
- Signal Processing laboratory 5 (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Jean-Baptiste Ledoux
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
- CIBM Center for Biomedical Imaging, Lausanne, Switzerland
| | | | - Patric Hagmann
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
| | - Solange Denervaud
- Department of Radiology, Lausanne University Hospital and University of Lausanne, 1011, Lausanne, Switzerland
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7
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Heiss R, Weber MA, Balbach EL, Hinsen M, Geissler F, Nagel AM, Ladd ME, Arkudas A, Horch RE, Gall C, Uder M, Roemer FW. Variation in cartilage T2 and T2* mapping of the wrist: a comparison between 3- and 7-T MRI. Eur Radiol Exp 2023; 7:80. [PMID: 38093075 PMCID: PMC10719234 DOI: 10.1186/s41747-023-00394-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 09/30/2023] [Indexed: 12/17/2023] Open
Abstract
BACKGROUND To analyze regional variations in T2 and T2* relaxation times in wrist joint cartilage and the triangular fibrocartilage complex (TFCC) at 3 and 7 T and to compare values between field strengths. METHODS Twenty-five healthy controls and 25 patients with chronic wrist pain were examined at 3 and 7 T on the same day using T2- and T2*-weighted sequences. Six different regions of interest (ROIs) were evaluated for cartilage and 3 ROIs were evaluated at the TFCC based on manual segmentation. Paired t-tests were used to compare T2 and T2* values between field strengths and between different ROIs. Spearman's rank correlation was calculated to assess correlations between T2 and T2* time values at 3 and 7 T. RESULTS T2 and T2* time values of the cartilage differed significantly between 3 and 7 T for all ROIs (p ≤ 0.045), with one exception: at the distal lunate, no significant differences in T2 values were observed between field strengths. T2* values differed significantly between 3 and 7 T for all ROIs of the TFCC (p ≤ 0.001). Spearman's rank correlation between 3 and 7 T ranged from 0.03 to 0.62 for T2 values and from 0.01 to 0.48 for T2* values. T2 and T2* values for cartilage varied across anatomic locations in healthy controls at both 3 and 7 T. CONCLUSION Quantitative results of T2 and T2* mapping at the wrist differ between field strengths, with poor correlation between 3 and 7 T. Local variations in cartilage T2 and T2* values are observed in healthy individuals. RELEVANCE STATEMENT T2 and T2* mapping are feasible for compositional imaging of the TFCC and the cartilage at the wrist at both 3 and 7 T, but the clinical interpretation remains challenging due to differences between field strengths and variations between anatomic locations. KEY POINTS •Field strength and anatomic locations influence T2 and T2* values at the wrist. •T2 and T2* values have a poor correlation between 3 and 7 T. •Local reference values are needed for each anatomic location for reliable interpretation.
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Affiliation(s)
- Rafael Heiss
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany.
| | - Marc-André Weber
- Institute of Diagnostic and Interventional Radiology, Pediatric Radiology and Neuroradiology, University Medical Center Rostock, Schillingallee 35, 18057, Rostock, Germany
| | - Eva L Balbach
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany
| | - Maximilian Hinsen
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany
| | - Frederik Geissler
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany
| | - Armin M Nagel
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
| | - Mark E Ladd
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Faculty of Medicine and Faculty of Physics and Astronomy, Heidelberg University, Im Neuenheimer Feld 226, 69120, Heidelberg, Germany
| | - Andreas Arkudas
- Department of Plastic and Hand Surgery and Laboratory for Tissue Engineering and Regenerative Medicine, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Krankenhausstraße 12, 91054, Erlangen, Germany
| | - Raymund E Horch
- Department of Plastic and Hand Surgery and Laboratory for Tissue Engineering and Regenerative Medicine, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Krankenhausstraße 12, 91054, Erlangen, Germany
| | - Christine Gall
- Institute for Medical Informatics, Biometry and Epidemiology, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Waldstraße 6, 91054, Erlangen, Germany
| | - Michael Uder
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany
| | - Frank W Roemer
- Department of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Maximiliansplatz 3, 91054, Erlangen, Germany
- Boston University School of Medicine, 72 E Concord St, Boston, MA, 02118, USA
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8
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Jang A, Han PK, Ma C, El Fakhri G, Wang N, Samsonov A, Liu F. B 1 inhomogeneity-corrected T 1 mapping and quantitative magnetization transfer imaging via simultaneously estimating Bloch-Siegert shift and magnetization transfer effects. Magn Reson Med 2023; 90:1859-1873. [PMID: 37427533 PMCID: PMC10528411 DOI: 10.1002/mrm.29778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 05/10/2023] [Accepted: 06/06/2023] [Indexed: 07/11/2023]
Abstract
PURPOSE To introduce a method of inducing Bloch-Siegert shift and magnetization Transfer Simultaneously (BTS) and demonstrate its utilization for measuring binary spin-bath model parameters free pool spin-lattice relaxation (T 1 F $$ {T}_1^{\mathrm{F}} $$ ), macromolecular fraction (f $$ f $$ ), magnetization exchange rate (k F $$ {k}_{\mathrm{F}} $$ ) and local transmit field (B 1 + $$ {B}_1^{+} $$ ). THEORY AND METHODS Bloch-Siegert shift and magnetization transfer is simultaneously induced through the application of off-resonance irradiation in between excitation and acquisition of an RF-spoiled gradient-echo scheme. Applying the binary spin-bath model, an analytical signal equation is derived and verified through Bloch simulations. Monte Carlo simulations were performed to analyze the method's performance. The estimation of the binary spin-bath parameters withB 1 + $$ {B}_1^{+} $$ compensation was further investigated through experiments, both ex vivo and in vivo. RESULTS Comparing BTS with existing methods, simulations showed that existing methods can significantly biasT 1 $$ {T}_1 $$ estimation when not accounting for transmitB 1 $$ {B}_1 $$ heterogeneity and MT effects that are present. Phantom experiments further showed that the degree of this bias increases with increasing macromolecular proton fraction. Multi-parameter fit results from an in vivo brain study generated values in agreement with previous literature. Based on these studies, we confirmed that BTS is a robust method for estimating the binary spin-bath parameters in macromolecule-rich environments, even in the presence ofB 1 + $$ {B}_1^{+} $$ inhomogeneity. CONCLUSION A method of estimating Bloch-Siegert shift and magnetization transfer effect has been developed and validated. Both simulations and experiments confirmed that BTS can estimate spin-bath parameters (T 1 F $$ {T}_1^{\mathrm{F}} $$ ,f $$ f $$ ,k F $$ {k}_{\mathrm{F}} $$ ) that are free fromB 1 + $$ {B}_1^{+} $$ bias.
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Affiliation(s)
- Albert Jang
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts, United States
- Harvard Medical School, Boston, Massachusetts, United States
| | - Paul K Han
- Gordon Center for Medical Imaging, Massachusetts General Hospital, Boston, Massachusetts, United States
- Harvard Medical School, Boston, Massachusetts, United States
| | - Chao Ma
- Gordon Center for Medical Imaging, Massachusetts General Hospital, Boston, Massachusetts, United States
- Harvard Medical School, Boston, Massachusetts, United States
| | - Georges El Fakhri
- Gordon Center for Medical Imaging, Massachusetts General Hospital, Boston, Massachusetts, United States
- Harvard Medical School, Boston, Massachusetts, United States
| | - Nian Wang
- Indiana University, Indianapolis, Indiana, United States
| | | | - Fang Liu
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts, United States
- Harvard Medical School, Boston, Massachusetts, United States
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9
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Reynolds LA, Morris SR, Vavasour IM, Barlow L, Laule C, MacKay AL, Michal CA. Nonaqueous magnetization following adiabatic and selective pulses in brain: T1 and cross-relaxation dynamics. NMR IN BIOMEDICINE 2023:e4936. [PMID: 36973767 DOI: 10.1002/nbm.4936] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 03/03/2023] [Accepted: 03/20/2023] [Indexed: 06/18/2023]
Abstract
Inversion pulses are commonly employed in MRI for T 1 $$ {T}_1 $$ -weighted contrast and relaxation measurements. In the brain, it is often assumed that adiabatic pulses saturate the nonaqueous magnetization. We investigated this assumption using solid-state NMR to monitor the nonaqueous signal directly following adiabatic inversion and compared this with signals following hard and soft inversion pulses. The effects of the different preparations on relaxation dynamics were explored. Inversion recovery experiments were performed on ex vivo bovine and porcine brains using 360-MHz (8.4 T) and 200-MHz (4.7 T) NMR spectrometers, respectively, using broadband rectangular, adiabatic, and sinc inversion pulses as well as a long rectangular saturation pulse. Analogous human brain MRI experiments were performed at 3 T using single-slice echo-planar imaging. Relaxation data were fitted by mono- and biexponential decay models. Further fitting analysis was performed using only two inversion delay times. Adiabatic and sinc inversion left much of the nonaqueous magnetization along B 0 $$ {B}_0 $$ and resulted in biexponential relaxation. Saturation of both aqueous and nonaqueous magnetization components led to effectively monoexponential T 1 $$ {T}_1 $$ relaxation. Typical adiabatic inversion pulses do not, as has been widely assumed, saturate the nonaqueous proton magnetization in white matter. Unequal magnetization states in aqueous and nonaqueous 1 H reservoirs prepared by soft and adiabatic pulses result in biexponential T 1 $$ {T}_1 $$ relaxation. Both pools must be prepared in the same magnetization state (e.g., saturated or inverted) in order to observe consistent monoexponential relaxation.
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Affiliation(s)
- Luke A Reynolds
- Department of Physics & Astronomy, University of British Columbia, Vancouver, BC, Canada
| | - Sarah R Morris
- Department of Physics & Astronomy, University of British Columbia, Vancouver, BC, Canada
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada
- International Collaboration on Repair Discoveries, Blusson Spinal Cord Centre, University of British Columbia, Vancouver, BC, Canada
| | - Irene M Vavasour
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada
- International Collaboration on Repair Discoveries, Blusson Spinal Cord Centre, University of British Columbia, Vancouver, BC, Canada
- UBC MRI Research Centre, University of British Columbia, Vancouver, BC, Canada
| | - Laura Barlow
- UBC MRI Research Centre, University of British Columbia, Vancouver, BC, Canada
| | - Cornelia Laule
- Department of Physics & Astronomy, University of British Columbia, Vancouver, BC, Canada
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada
- International Collaboration on Repair Discoveries, Blusson Spinal Cord Centre, University of British Columbia, Vancouver, BC, Canada
- Department of Pathology & Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada
| | - Alex L MacKay
- Department of Physics & Astronomy, University of British Columbia, Vancouver, BC, Canada
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada
- UBC MRI Research Centre, University of British Columbia, Vancouver, BC, Canada
| | - Carl A Michal
- Department of Physics & Astronomy, University of British Columbia, Vancouver, BC, Canada
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10
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Wang D, Ehses P, Stöcker T, Stirnberg R. Reproducibility of rapid multi-parameter mapping at 3T and 7T with highly segmented and accelerated 3D-EPI. Magn Reson Med 2022; 88:2217-2232. [PMID: 35877781 DOI: 10.1002/mrm.29383] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 06/16/2022] [Accepted: 06/17/2022] [Indexed: 11/11/2022]
Abstract
PURPOSE Quantitative multi-parameter mapping (MPM) has been shown to provide good longitudinal and cross-sectional reproducibility for clinical research. Unfortunately, acquisition times (TAs) are typically infeasible for routine scanning at high resolutions. METHODS A fast whole-brain MPM protocol based on interleaved multi-shot 3D-EPI with controlled aliasing (SC-EPI) at 3T and 7T is proposed and compared with MPM using a standard spoiled gradient echo (FLASH) sequence. Four parameters (R1 , PD, R 2 * $$ {R}_2^{\ast } $$ , and MTsat) were measured in less than 3 min at 1 mm isotropic resolution. Five subjects went through the same scanning sessions twice at each scanner. The intra-subject coefficient of variation (scan-rescan) (CoV) was estimated for each protocol and scanner to assess the longitudinal reproducibility. RESULTS At 3T, the CoV of SC-EPI ranged between 1.2%-4.8% for PD and R1 , 2.8%-10.6% for R 2 * $$ {R}_2^{\ast } $$ and MTsat, which was comparable with FLASH (0.6%-4.9% for PD and R1 , 2.6%-11.3% for R 2 * $$ {R}_2^{\ast } $$ and MTsat). At 7T, where the SC-EPI TA was reduced to ∼2 min, the CoV of SC-EPI (1.4%-10.6% for PD, R1 , and R 2 * $$ {R}_2^{\ast } $$ ) was 1.2-2.4 times larger than the CoV of FLASH (1.0%-15%) and MTsat showed much higher variability across subjects. The SC-EPI-MPM protocol at 3T showed high reproducibility and yielded stable quantitative maps at a clinically feasible resolution and scan time, whereas at 7T, MT saturation homogeneity needs to be improved. CONCLUSION SC-EPI-based MPM is feasible as an additional MRI modality in clinical or population studies where the parameters offer great potential as biomarkers.
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Affiliation(s)
- Difei Wang
- German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
| | - Philipp Ehses
- German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
| | - Tony Stöcker
- German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.,Department of Physics and Astronomy, University of Bonn, Bonn, Germany
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11
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Kose R, Kose K, Terada Y. Implementation of the QRAPMASTER data analysis using dictionary matching and quantitative evaluation of the magnetization transfer effect. Magn Reson Imaging 2022; 90:26-36. [DOI: 10.1016/j.mri.2022.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 03/22/2022] [Accepted: 03/27/2022] [Indexed: 10/18/2022]
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12
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Fujita S, Cencini M, Buonincontri G, Takei N, Schulte RF, Fukunaga I, Uchida W, Hagiwara A, Kamagata K, Hagiwara Y, Matsuyama Y, Abe O, Tosetti M, Aoki S. Simultaneous relaxometry and morphometry of human brain structures with 3D magnetic resonance fingerprinting: a multicenter, multiplatform, multifield-strength study. Cereb Cortex 2022; 33:729-739. [PMID: 35271703 PMCID: PMC9890456 DOI: 10.1093/cercor/bhac096] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 02/10/2022] [Accepted: 02/12/2022] [Indexed: 02/04/2023] Open
Abstract
Relaxation times and morphological information are fundamental magnetic resonance imaging-derived metrics of the human brain that reflect the status of the underlying tissue. Magnetic resonance fingerprinting (MRF) enables simultaneous acquisition of T1 and T2 maps inherently aligned to the anatomy, allowing whole-brain relaxometry and morphometry in a single scan. In this study, we revealed the feasibility of 3D MRF for simultaneous brain structure-wise morphometry and relaxometry. Comprehensive test-retest scan analyses using five 1.5-T and three 3.0-T systems from a single vendor including different scanner types across 3 institutions demonstrated that 3D MRF-derived morphological information and relaxation times are highly repeatable at both 1.5 T and 3.0 T. Regional cortical thickness and subcortical volume values showed high agreement and low bias across different field strengths. The ability to acquire a set of regional T1, T2, thickness, and volume measurements of neuroanatomical structures with high repeatability and reproducibility facilitates the ability of longitudinal multicenter imaging studies to quantitatively monitor changes associated with underlying pathologies, disease progression, and treatments.
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Affiliation(s)
- Shohei Fujita
- Corresponding author: Department of Radiology, Juntendo University School of Medicine, 12-1 Hongo, Bunkyo, Tokyo 113-8421, Japan.
| | - Matteo Cencini
- Imago7 Foundation, Pisa, Italy,IRCCS Stella Maris, Pisa, Italy
| | | | | | | | - Issei Fukunaga
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Wataru Uchida
- Department of Radiology, Juntendo University, Tokyo, Japan
| | | | - Koji Kamagata
- Department of Radiology, Juntendo University, Tokyo, Japan
| | - Yasuhiro Hagiwara
- Department of Biostatistics, School of Public Health, The University of Tokyo, Tokyo, Japan
| | - Yutaka Matsuyama
- Department of Biostatistics, School of Public Health, The University of Tokyo, Tokyo, Japan
| | - Osamu Abe
- Department of Radiology, The University of Tokyo, Tokyo, Japan
| | - Michela Tosetti
- Imago7 Foundation, Pisa, Italy,IRCCS Stella Maris, Pisa, Italy
| | - Shigeki Aoki
- Department of Radiology, Juntendo University, Tokyo, Japan
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13
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Leitão D, Teixeira RPAG, Price A, Uus A, Hajnal JV, Malik SJ. Efficiency analysis for quantitative MRI of T1 and T2 relaxometry methods. Phys Med Biol 2021; 66:15NT02. [PMID: 34192676 PMCID: PMC8312556 DOI: 10.1088/1361-6560/ac101f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 05/12/2021] [Accepted: 06/30/2021] [Indexed: 11/11/2022]
Abstract
This study presents a comparison of quantitative MRI methods based on an efficiency metric that quantifies their intrinsic ability to extract information about tissue parameters. Under a regime of unbiased parameter estimates, an intrinsic efficiency metricηwas derived for fully-sampled experiments which can be used to both optimize and compare sequences. Here we optimize and compare several steady-state and transient gradient-echo based qMRI methods, such as magnetic resonance fingerprinting (MRF), for jointT1andT2mapping. The impact of undersampling was also evaluated, assuming incoherent aliasing that is treated as noise by parameter estimation.In vivovalidation of the efficiency metric was also performed. Transient methods such as MRF can be up to 3.5 times more efficient than steady-state methods, when spatial undersampling is ignored. If incoherent aliasing is treated as noise during least-squares parameter estimation, the efficiency is reduced in proportion to the SNR of the data, with reduction factors of 5 often seen for practical SNR levels.In vivovalidation showed a very good agreement between the theoretical and experimentally predicted efficiency. This work presents and validates an efficiency metric to optimize and compare the performance of qMRI methods. Transient methods were found to be intrinsically more efficient than steady-state methods, however the effect of spatial undersampling can significantly erode this advantage.
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Affiliation(s)
- David Leitão
- School of Biomedical Engineering and Imaging Sciences, King’s College London, London, United Kingdom
- Communication Address: Perinatal Imaging and Health 1st Floor South Wing, St Thomas’ Hospital London SE1 7EHUK, United Kingdom
| | - Rui Pedro A. G. Teixeira
- School of Biomedical Engineering and Imaging Sciences, King’s College London, London, United Kingdom
- Centre for the Developing Brain, King’s College London, London, United Kingdom
| | - Anthony Price
- School of Biomedical Engineering and Imaging Sciences, King’s College London, London, United Kingdom
- Centre for the Developing Brain, King’s College London, London, United Kingdom
| | - Alena Uus
- School of Biomedical Engineering and Imaging Sciences, King’s College London, London, United Kingdom
| | - Joseph V. Hajnal
- School of Biomedical Engineering and Imaging Sciences, King’s College London, London, United Kingdom
- Centre for the Developing Brain, King’s College London, London, United Kingdom
| | - Shaihan J. Malik
- School of Biomedical Engineering and Imaging Sciences, King’s College London, London, United Kingdom
- Centre for the Developing Brain, King’s College London, London, United Kingdom
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14
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Reymbaut A, Critchley J, Durighel G, Sprenger T, Sughrue M, Bryskhe K, Topgaard D. Toward nonparametric diffusion- T1 characterization of crossing fibers in the human brain. Magn Reson Med 2021; 85:2815-2827. [PMID: 33301195 PMCID: PMC7898694 DOI: 10.1002/mrm.28604] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 10/26/2020] [Accepted: 10/27/2020] [Indexed: 12/24/2022]
Abstract
PURPOSE To estimate T 1 for each distinct fiber population within voxels containing multiple brain tissue types. METHODS A diffusion- T 1 correlation experiment was carried out in an in vivo human brain using tensor-valued diffusion encoding and multiple repetition times. The acquired data were inverted using a Monte Carlo algorithm that retrieves nonparametric distributions P ( D , R 1 ) of diffusion tensors and longitudinal relaxation rates R 1 = 1 / T 1 . Orientation distribution functions (ODFs) of the highly anisotropic components of P ( D , R 1 ) were defined to visualize orientation-specific diffusion-relaxation properties. Finally, Monte Carlo density-peak clustering (MC-DPC) was performed to quantify fiber-specific features and investigate microstructural differences between white matter fiber bundles. RESULTS Parameter maps corresponding to P ( D , R 1 ) 's statistical descriptors were obtained, exhibiting the expected R 1 contrast between brain tissue types. Our ODFs recovered local orientations consistent with the known anatomy and indicated differences in R 1 between major crossing fiber bundles. These differences, confirmed by MC-DPC, were in qualitative agreement with previous model-based works but seem biased by the limitations of our current experimental setup. CONCLUSIONS Our Monte Carlo framework enables the nonparametric estimation of fiber-specific diffusion- T 1 features, thereby showing potential for characterizing developmental or pathological changes in T 1 within a given fiber bundle, and for investigating interbundle T 1 differences.
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Affiliation(s)
- Alexis Reymbaut
- Department of Physical ChemistryLund UniversityLundSweden
- Random Walk Imaging ABLundSweden
| | | | | | - Tim Sprenger
- Karolinska InstituteStockholmSweden
- GE HealthcareStockholmSweden
| | | | | | - Daniel Topgaard
- Department of Physical ChemistryLund UniversityLundSweden
- Random Walk Imaging ABLundSweden
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15
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Sanchez Panchuelo RM, Mougin O, Turner R, Francis ST. Quantitative T1 mapping using multi-slice multi-shot inversion recovery EPI. Neuroimage 2021; 234:117976. [PMID: 33781969 PMCID: PMC8204273 DOI: 10.1016/j.neuroimage.2021.117976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 02/27/2021] [Accepted: 03/13/2021] [Indexed: 11/12/2022] Open
Abstract
An efficient multi-slice inversion–recovery EPI (MS-IR-EPI) sequence for fast, high spatial resolution, quantitative T1 mapping is presented, using a segmented simultaneous multi-slice acquisition, combined with slice order shifting across multiple acquisitions. The segmented acquisition minimises the effective TE and readout duration compared to a single-shot EPI scheme, reducing geometric distortions to provide high quality T1 maps with a narrow point-spread function. The precision and repeatability of MS-IR-EPI T1 measurements are assessed using both T1-calibrated and T2-calibrated ISMRM/NIST phantom spheres at 3 and 7 T and compared with single slice IR and MP2RAGE methods. Magnetization transfer (MT) effects of the spectrally-selective fat-suppression (FS) pulses required for in vivo imaging are shown to shorten the measured in-vivo T1 values. We model the effect of these fat suppression pulses on T1 measurements and show that the model can remove their MT contribution from the measured T1, thus providing accurate T1 quantification. High spatial resolution T1 maps of the human brain generated with MS-IR-EPI at 7 T are compared with those generated with the widely implemented MP2RAGE sequence. Our MS-IR-EPI sequence provides high SNR per unit time and sharper T1 maps than MP2RAGE, demonstrating the potential for ultra-high resolution T1 mapping and the improved discrimination of functionally relevant cortical areas in the human brain.
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Affiliation(s)
- Rosa M Sanchez Panchuelo
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom; NIHR Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom.
| | - Olivier Mougin
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom
| | - Robert Turner
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom; Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Susan T Francis
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom; NIHR Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom
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16
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Buonincontri G, Kurzawski JW, Kaggie JD, Matys T, Gallagher FA, Cencini M, Donatelli G, Cecchi P, Cosottini M, Martini N, Frijia F, Montanaro D, Gómez PA, Schulte RF, Retico A, Tosetti M. Three dimensional MRF obtains highly repeatable and reproducible multi-parametric estimations in the healthy human brain at 1.5T and 3T. Neuroimage 2021; 226:117573. [PMID: 33221451 DOI: 10.1016/j.neuroimage.2020.117573] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 11/05/2020] [Accepted: 11/10/2020] [Indexed: 12/19/2022] Open
Abstract
Magnetic resonance fingerprinting (MRF) is highly promising as a quantitative MRI technique due to its accuracy, robustness, and efficiency. Previous studies have found high repeatability and reproducibility of 2D MRF acquisitions in the brain. Here, we have extended our investigations to 3D MRF acquisitions covering the whole brain using spiral projection k-space trajectories. Our travelling head study acquired test/retest data from the brains of 12 healthy volunteers and 8 MRI systems (3 systems at 3 T and 5 at 1.5 T, all from a single vendor), using a study design not requiring all subjects to be scanned at all sites. The pulse sequence and reconstruction algorithm were the same for all acquisitions. After registration of the MRF-derived PD T1 and T2 maps to an anatomical atlas, coefficients of variation (CVs) were computed to assess test/retest repeatability and inter-site reproducibility in each voxel, while a General Linear Model (GLM) was used to determine the voxel-wise variability between all confounders, which included test/retest, subject, field strength and site. Our analysis demonstrated a high repeatability (CVs 0.7-1.3% for T1, 2.0-7.8% for T2, 1.4-2.5% for normalized PD) and reproducibility (CVs of 2.0-5.8% for T1, 7.4-10.2% for T2, 5.2-9.2% for normalized PD) in gray and white matter. Both repeatability and reproducibility improved when compared to similar experiments using 2D acquisitions. Three-dimensional MRF obtains highly repeatable and reproducible estimations of T1 and T2, supporting the translation of MRF-based fast quantitative imaging into clinical applications.
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Affiliation(s)
| | - Jan W Kurzawski
- IRCCS Stella Maris, Pisa, Italy; National Institute for Nuclear Physics (INFN), Pisa, Italy
| | - Joshua D Kaggie
- Department of Radiology, University of Cambridge and Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom
| | - Tomasz Matys
- Department of Radiology, University of Cambridge and Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom
| | - Ferdia A Gallagher
- Department of Radiology, University of Cambridge and Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom
| | - Matteo Cencini
- IRCCS Stella Maris, Pisa, Italy; Imago7 Foundation, Pisa, Italy
| | - Graziella Donatelli
- Imago7 Foundation, Pisa, Italy; U.O. Neuroradiologia, Azienda Ospedaliera Universitaria Pisana (AOUP), Pisa, Italy
| | - Paolo Cecchi
- U.O. Neuroradiologia, Azienda Ospedaliera Universitaria Pisana (AOUP), Pisa, Italy
| | - Mirco Cosottini
- Imago7 Foundation, Pisa, Italy; U.O. Neuroradiologia, Azienda Ospedaliera Universitaria Pisana (AOUP), Pisa, Italy; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy
| | - Nicola Martini
- U.O.C. Bioingegneria e Ing. Clinica, Fondazione Toscana Gabriele Monasterio, Pisa, Italy
| | - Francesca Frijia
- U.O.C. Bioingegneria e Ing. Clinica, Fondazione Toscana Gabriele Monasterio, Pisa, Italy
| | - Domenico Montanaro
- U.O.C. Risonanza Magnetica Specialistica e Neuroradiologia, Fondazione CNR/Regione Toscana G. Monasterio, Pisa-Massa, Italy
| | - Pedro A Gómez
- Imago7 Foundation, Pisa, Italy; Technical University of Munich, Munich, Germany
| | | | | | - Michela Tosetti
- IRCCS Stella Maris, Pisa, Italy; Imago7 Foundation, Pisa, Italy.
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17
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Optimizing neuromelanin contrast in the substantia nigra and locus coeruleus using a magnetization transfer contrast prepared 3D gradient recalled echo sequence. Neuroimage 2020; 218:116935. [DOI: 10.1016/j.neuroimage.2020.116935] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2020] [Revised: 05/06/2020] [Accepted: 05/07/2020] [Indexed: 12/12/2022] Open
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18
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Soustelle L, Antal MC, Lamy J, Harsan LA, Loureiro de Sousa P. Determination of optimal parameters for 3D single-point macromolecular proton fraction mapping at 7T in healthy and demyelinated mouse brain. Magn Reson Med 2020; 85:369-379. [PMID: 32767495 DOI: 10.1002/mrm.28397] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Revised: 06/05/2020] [Accepted: 06/05/2020] [Indexed: 12/19/2022]
Abstract
PURPOSE To determine optimal constrained tissue parameters and off-resonance sequence parameters for single-point macromolecular proton fraction (SP-MPF) mapping based on a comprehensive quantitative magnetization transfer (qMT) protocol in healthy and demyelinated living mice at 7T. METHODS Using 3D spoiled gradient echo-based sequences, a comprehensive qMT protocol is performed by sampling the Z-spectrum of mice brains, in vivo. Provided additional T1 , B 1 + and B0 maps allow for the estimation of qMT tissue parameters, among which three will be constrained, namely the longitudinal and transverse relaxation characteristics of the free pool (R1,f T2,f ), the cross-relaxation rate (R) and the bound pool transverse relaxation time (T2,r ). Different sets of constrained parameters are investigated to reduce the bias between the SP-MPF and its reference based on the comprehensive protocol. RESULTS Based on a whole-brain histogram analysis about the constrained parameters, the optimal experimental parameters that minimize the global bias between reference and SP-MPF maps consist of a 600° and 6 kHz off-resonance irradiation pulse. Following a Bland-Altman analysis over regions of interest, optimal constrained parameters were R1,f T2,f = 0.0129, R = 26.5 s-1 , and T2,r = 9.1 µs, yielding an overall MPF bias of 10-4 (limits of agreement [-0.0068;0.0070]) and a relative variation of 0.64% ± 5.95% between the reference and the optimal single-point method across all mice. CONCLUSION The necessity of estimating animal model- and field-dependent constrained parameters was demonstrated. The single-point MPF method can be reliably applied at 7T, as part of routine preclinical in vivo imaging protocol in mice.
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Affiliation(s)
- Lucas Soustelle
- ICube, Université de Strasbourg, CNRS, Strasbourg, France.,Aix Marseille University, CNRS, CRMBM, Marseille, France
| | | | - Julien Lamy
- ICube, Université de Strasbourg, CNRS, Strasbourg, France
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Anisimov NV, Pavlova OS, Pirogov YA, Yarnykh VL. Three-dimensional fast single-point macromolecular proton fraction mapping of the human brain at 0.5 Tesla. Quant Imaging Med Surg 2020; 10:1441-1449. [PMID: 32676363 DOI: 10.21037/qims-19-1057] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Fast single-point macromolecular proton fraction (MPF) mapping is a recent magnetic resonance imaging (MRI) method enabling quantitative assessment of myelin content in neural tissues. To date, the reported technical implementations of MPF mapping utilized high-field MRI equipment (1.5 T or higher), while low-field applications might pose challenges due to signal-to-noise ratio (SNR) limitations and short T1 . This study aimed to evaluate the feasibility of MPF mapping of the human brain at 0.5 T. The three-dimensional MPF mapping protocol was implemented according to the single-point synthetic-reference method, which includes three spoiled gradient-echo sequences providing proton density, T1 , and magnetization transfer contrast weightings. Whole-brain MPF maps were obtained from three healthy volunteers with spatial resolution of 1.5×1.5×2 mm3 and the total scan time of 19 minutes. MPF values were measured in a series of white and gray matter structures and compared with literature data for 3 T magnetic field. MPF maps enabled high contrast between white and gray matter with notable insensitivity to paramagnetic effects in iron-rich structures, such as globus pallidus, substantia nigra, and dentate nucleus. MPF values at 0.5 T appeared in close agreement with those at 3 T. This study demonstrates the feasibility of fast MPF mapping with low-field MRI equipment and the independence of brain MPF values of magnetic field. The presented results confirm the utility of MPF as an absolute scale for MRI-based myelin content measurements across a wide range of magnetic field strengths and extend the applicability of fast MPF mapping to inexpensive low-field MRI hardware.
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Affiliation(s)
- Nikolay V Anisimov
- Faculty of Fundamental Medicine, Lomonosov Moscow State University, 117192, Moscow, Lomonosovsky Prospekt, 31-5, Russian Federation
| | - Olga S Pavlova
- Faculty of Fundamental Medicine, Lomonosov Moscow State University, 117192, Moscow, Lomonosovsky Prospekt, 31-5, Russian Federation.,Faculty of Physics, Lomonosov Moscow State University, 119991, Moscow, GSP-1, Leninskie Gory, 1-2, Russian Federation
| | - Yury A Pirogov
- Faculty of Physics, Lomonosov Moscow State University, 119991, Moscow, GSP-1, Leninskie Gory, 1-2, Russian Federation.,Institute for Physical and Chemical Fundamentals of Artificial Intelligence, Lomonosov Moscow State University, 119991, Moscow, GSP-1, Leninskie Gory, 1-11, Russian Federation
| | - Vasily L Yarnykh
- Department of Radiology, University of Washington, Seattle, WA 98109, USA.,Research Institute of Biology and Biophysics, Tomsk State University, 634050, Tomsk, Russian Federation
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A G Teixeira RP, Neji R, Wood TC, Baburamani AA, Malik SJ, Hajnal JV. Controlled saturation magnetization transfer for reproducible multivendor variable flip angle T 1 and T 2 mapping. Magn Reson Med 2019; 84:221-236. [PMID: 31846122 PMCID: PMC7154666 DOI: 10.1002/mrm.28109] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 10/15/2019] [Accepted: 11/14/2019] [Indexed: 02/05/2023]
Abstract
Purpose The widespread clinical application of quantitative MRI has been hindered by a lack of reproducibility across sites and vendors. Previous work has attributed this to incorrect B1 mapping or insufficient spoiling conditions. We recently proposed the controlled saturation magnetization transfer (CSMT) framework and hypothesized that the lack of reproducibility can also be attributed to magnetization transfer effects. This work seeks to validate this hypothesis and demonstrate that reproducible multivendor single‐pool relaxometry can be achieved with the CSMT approach. Methods Three healthy volunteers were scanned on scanners from 3 vendors (GE Healthcare, Philips, Siemens). An extensive set of images necessary for joint T1 and T2 estimation were acquired with (1) each vendor default RF pulses and spoiling conditions; (2) harmonized RF spoiling; and (3) harmonized RF spoiling and CSMT pulses. Different subsets of images were used to generate 6 different T1 and T2 maps for each subject’s data from each vendor. Cross‐protocol, cross‐vendor, and test/retest variability were estimated. Results Harmonized RF spoiling conditions are insufficient to ensure good cross‐vendor reproducibility. Controlled saturation magnetization transfer allows cross‐protocol variability to be reduced from 18.3% to 4.0%. Whole‐brain variability using the same protocol was reduced from a maximum of 19% to 4.5% across sites. Both CSMT and native vendor RF conditions have a reported variability of less than 5% for repeat measures on the same vendor. Conclusion Magnetization transfer effects are a major contributor to intersite/intrasite variability of T1 and T2 estimation. Controlled saturation magnetization transfer stabilizes these effects, paving the way for the use of single‐pool T1 and T2 as a reliable source for clinical diagnosis across sites.
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Affiliation(s)
- Rui Pedro A G Teixeira
- Center for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom.,Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
| | - Radhouene Neji
- Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom.,Magnetic Resonance Research Collaborations, Siemens Healthcare Limited, Frimley, United Kingdom
| | - Tobias C Wood
- Department of Neuroimaging, King's College London, London, United Kingdom
| | - Ana A Baburamani
- Center for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
| | - Shaihan J Malik
- Center for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom.,Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
| | - Joseph V Hajnal
- Center for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom.,Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
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