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For: Nishida Y, Ishikawa H, Baba S, Nakagawa N, Kuramitsu S, Masui R. Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii. Proteins 2010;78:2395-8. [PMID: 20544974 DOI: 10.1002/prot.22748] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Number Cited by Other Article(s)
1
Wang C, Molodtsov V, Sanders TJ, Marshall CJ, Firlar E, Kaelber JT, Santangelo TJ, Ebright RH. Structural basis of archaeal FttA-dependent transcription termination. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.09.552649. [PMID: 37609354 PMCID: PMC10441395 DOI: 10.1101/2023.08.09.552649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
2
Vandanashree M, Singh AK, Gopal B. Characterization of RNase J. Methods Enzymol 2023;692:177-215. [PMID: 37925179 DOI: 10.1016/bs.mie.2023.03.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2023]
3
Li J, Yue L, Li Z, Zhang W, Zhang B, Zhao F, Dong X. aCPSF1 cooperates with terminator U-tract to dictate archaeal transcription termination efficacy. eLife 2021;10:70464. [PMID: 34964713 PMCID: PMC8716108 DOI: 10.7554/elife.70464] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 12/16/2021] [Indexed: 01/19/2023]  Open
4
Wiedermannová J, Krásný L. β-CASP proteins removing RNA polymerase from DNA: when a torpedo is needed to shoot a sitting duck. Nucleic Acids Res 2021;49:10221-10234. [PMID: 34551438 PMCID: PMC8501993 DOI: 10.1093/nar/gkab803] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 09/01/2021] [Accepted: 09/06/2021] [Indexed: 12/12/2022]  Open
5
Liu H, Moore CL. On the Cutting Edge: Regulation and Therapeutic Potential of the mRNA 3' End Nuclease. Trends Biochem Sci 2021;46:772-784. [PMID: 33941430 PMCID: PMC8364479 DOI: 10.1016/j.tibs.2021.04.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 03/18/2021] [Accepted: 04/02/2021] [Indexed: 12/24/2022]
6
Sanders TJ, Wenck BR, Selan JN, Barker MP, Trimmer SA, Walker JE, Santangelo TJ. FttA is a CPSF73 homologue that terminates transcription in Archaea. Nat Microbiol 2020;5:545-553. [PMID: 32094586 PMCID: PMC7103508 DOI: 10.1038/s41564-020-0667-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Accepted: 01/06/2020] [Indexed: 12/23/2022]
7
Clouet-d'Orval B, Batista M, Bouvier M, Quentin Y, Fichant G, Marchfelder A, Maier LK. Insights into RNA-processing pathways and associated RNA-degrading enzymes in Archaea. FEMS Microbiol Rev 2018;42:579-613. [PMID: 29684129 DOI: 10.1093/femsre/fuy016] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 04/17/2018] [Indexed: 12/20/2022]  Open
8
An Overview of Ribonuclease Repertoire and RNA Processing Pathways in Archaea. ACTA ACUST UNITED AC 2017. [DOI: 10.1007/978-3-319-65795-0_4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
9
Clouet-d’Orval B, Phung DK, Langendijk-Genevaux PS, Quentin Y. Universal RNA-degrading enzymes in Archaea: Prevalence, activities and functions of β-CASP ribonucleases. Biochimie 2015;118:278-85. [DOI: 10.1016/j.biochi.2015.05.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2015] [Accepted: 05/28/2015] [Indexed: 12/13/2022]
10
Nicastro G, Taylor IA, Ramos A. KH-RNA interactions: back in the groove. Curr Opin Struct Biol 2015;30:63-70. [PMID: 25625331 DOI: 10.1016/j.sbi.2015.01.002] [Citation(s) in RCA: 95] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2014] [Revised: 12/20/2014] [Accepted: 01/08/2015] [Indexed: 12/30/2022]
11
Jurado AR, Tan D, Jiao X, Kiledjian M, Tong L. Structure and function of pre-mRNA 5'-end capping quality control and 3'-end processing. Biochemistry 2014;53:1882-98. [PMID: 24617759 PMCID: PMC3977584 DOI: 10.1021/bi401715v] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Delineating the structural blueprint of the pre-mRNA 3'-end processing machinery. Mol Cell Biol 2014;34:1894-910. [PMID: 24591651 DOI: 10.1128/mcb.00084-14] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
13
Dominski Z, Carpousis AJ, Clouet-d'Orval B. Emergence of the β-CASP ribonucleases: highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2013;1829:532-51. [PMID: 23403287 DOI: 10.1016/j.bbagrm.2013.01.010] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2012] [Revised: 01/18/2013] [Accepted: 01/22/2013] [Indexed: 01/05/2023]
14
Phung DK, Rinaldi D, Langendijk-Genevaux PS, Quentin Y, Carpousis AJ, Clouet-d'Orval B. Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor. Nucleic Acids Res 2012;41:1091-103. [PMID: 23222134 PMCID: PMC3553952 DOI: 10.1093/nar/gks1237] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
15
snRNA 3' end formation requires heterodimeric association of integrator subunits. Mol Cell Biol 2012;32:1112-23. [PMID: 22252320 DOI: 10.1128/mcb.06511-11] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
16
Silva APG, Chechik M, Byrne RT, Waterman DG, Ng CL, Dodson EJ, Koonin EV, Antson AA, Smits C. Structure and activity of a novel archaeal β-CASP protein with N-terminal KH domains. Structure 2011;19:622-32. [PMID: 21565697 PMCID: PMC3095777 DOI: 10.1016/j.str.2011.03.002] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2010] [Revised: 03/03/2011] [Accepted: 03/09/2011] [Indexed: 11/03/2022]
17
Newman JA, Hewitt L, Rodrigues C, Solovyova A, Harwood CR, Lewis RJ. Unusual, dual endo- and exonuclease activity in the degradosome explained by crystal structure analysis of RNase J1. Structure 2011;19:1241-51. [PMID: 21893285 DOI: 10.1016/j.str.2011.06.017] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2011] [Revised: 06/07/2011] [Accepted: 06/25/2011] [Indexed: 11/23/2022]
18
Yang Q, Doublié S. Structural biology of poly(A) site definition. WILEY INTERDISCIPLINARY REVIEWS-RNA 2011;2:732-47. [PMID: 21823232 DOI: 10.1002/wrna.88] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
19
The Metallo-β-Lactamase Family of Ribonucleases. NUCLEIC ACIDS AND MOLECULAR BIOLOGY 2011. [DOI: 10.1007/978-3-642-21078-5_10] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
20
Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor. J Struct Biol 2010;173:191-5. [PMID: 20851187 DOI: 10.1016/j.jsb.2010.09.013] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2010] [Revised: 09/08/2010] [Accepted: 09/14/2010] [Indexed: 11/24/2022]
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