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Staněk T, Rybová A, Boháč M, Bartoníčková E, Palovčík J. The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker. J Microsc 2024; 294:225-232. [PMID: 38558054 DOI: 10.1111/jmi.13293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 03/06/2024] [Accepted: 03/19/2024] [Indexed: 04/04/2024]
Abstract
Both copper and lithium act as strong fluxes and lower the temperature of the clinker melt formation. Sulphur promotes the stabilisation of more hydraulically active modification of alite M1. It is expected that this combination could produce an alite clinker at significantly lower temperatures with high quality technological parameters. In this paper, the effect of combined oxides of copper, lithium and sulphur addition on the phase composition and clinker structure of Portland cement was investigated. The reference raw meal was prepared from common cement raw materials. Each of the mentioned oxides was added to the reference raw meal in two different concentrations, and 8 combinations were prepared. Chemically pure compounds (NH4)2SO4, CuO and Li2CO3 were used as a source of these oxides. The raw meals were burned to equilibrium at 1450°C. Their phase composition was determined by X-ray diffraction analysis, the microstructure was monitored by optical microscopy, and the microchemistry of the clinker phases was observed by electron microscopy with EDS analysis. It was found that in samples with high lithium or copper content, there is an increase in belite and free lime at the expense of alite. The combination of Cu + Li has the most negative effect, followed by Li alone and Cu alone. The higher SO3 content slightly offsets this negative effect.
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Affiliation(s)
- Theodor Staněk
- Binder systems, Research Institute for Building Materials, Brno, Czech Republic
| | - Alexandra Rybová
- Binder systems, Research Institute for Building Materials, Brno, Czech Republic
| | - Martin Boháč
- Binder systems, Research Institute for Building Materials, Brno, Czech Republic
| | - Eva Bartoníčková
- Faculty of Chemistry, Brno University of Technology, Brno, Czech Republic
| | - Jakub Palovčík
- Faculty of Chemistry, Brno University of Technology, Brno, Czech Republic
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Boháč M, Zezulová A, Krejčí Kotlánová M, Kubátová D, Staněk T, Krejza Z, Všianský D, Novotný R, Palovčík J, Dvořák K. Early hydration of C 4AF with silica fume and its role on katoite composition. J Microsc 2024; 294:168-176. [PMID: 38418930 DOI: 10.1111/jmi.13280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 02/09/2024] [Accepted: 02/14/2024] [Indexed: 03/02/2024]
Abstract
C4AF is considered the least reactive main clinker phase, but its reactivity may be affected by adding supplementary cementitious materials (SCMs). Pure C4AF was synthesised in a laboratory furnace, and the role of silica fume without gypsum on its early hydration properties was monitored. Burning was carried out in four stages to achieve 99% purity of C4AF. Heat flow development was monitored by isothermal calorimetry over 7 days of hydration at 20°C and 40°C. The role of silica fume on hydrogarnet phase katoite (Ca3Al2(SiO4)3 - x(OH)4 x x = 1.5-3) formation during early hydration was studied. Rapid dissolution of C4AF, formation of metastable C-(A,F)-H and its conversion to C3(A, F)H6 was evidenced by isothermal calorimetry as a large exotherm. Changes in microstructure during early hydration were documented by SE micrographs, EDS point analyses, X-ray mapping and line scans by SEM-EDS. The phase composition was characterised by DTA-TGA and QXRD after 7 days of hydration. The katoite diffraction pattern is similar for the reference sample and sample with silica fume, but substitution in its structure can be revealed by X-ray microanalyses. The composition of katoite is variable due to the various extent of substitution of 4OH- by SiO4 4- due to silica fume.
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Affiliation(s)
- Martin Boháč
- Research Institute for Building Materials, Brno, Czech Republic
| | - Anežka Zezulová
- Research Institute for Building Materials, Brno, Czech Republic
| | | | - Dana Kubátová
- Research Institute for Building Materials, Brno, Czech Republic
| | - Theodor Staněk
- Research Institute for Building Materials, Brno, Czech Republic
| | - Zdeněk Krejza
- Research Institute for Building Materials, Brno, Czech Republic
| | - Dalibor Všianský
- Faculty of Science, Department of Geological Sciences, Masaryk University, Brno, Czech Republic
| | - Radek Novotný
- Faculty of Chemistry, Brno University of Technology, Brno, Czech Republic
| | - Jakub Palovčík
- Faculty of Chemistry, Brno University of Technology, Brno, Czech Republic
| | - Karel Dvořák
- Faculty of Civil Engineering, Institute of Technology of Building Materials and Components, Brno University of Technology, Brno, Czech Republic
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Durydivka O, Palivec P, Gazdarica M, Mackie K, Blahos J, Kuchar M. Hexahydrocannabinol (HHC) and Δ 9-tetrahydrocannabinol (Δ 9-THC) driven activation of cannabinoid receptor 1 results in biased intracellular signaling. Sci Rep 2024; 14:9181. [PMID: 38649680 PMCID: PMC11035541 DOI: 10.1038/s41598-024-58845-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 04/03/2024] [Indexed: 04/25/2024] Open
Abstract
The Cannabis sativa plant has been used for centuries as a recreational drug and more recently in the treatment of patients with neurological or psychiatric disorders. In many instances, treatment goals include relief from posttraumatic disorders, anxiety, or to support treatment of chronic pain. Ligands acting on cannabinoid receptor 1 (CB1R) are also potential targets for the treatment of other health conditions. Using an evidence-based approach, pharmacological investigation of CB1R agonists is timely, with the aim to provide chronically ill patients relief using well-defined and characterized compounds from cannabis. Hexahydrocannabinol (HHC), currently available over the counter in many countries to adults and even children, is of great interests to policy makers, legal administrators, and healthcare regulators, as well as pharmacologists. Herein, we studied the pharmacodynamics of HHC epimers, which activate CB1R. We compared their key CB1R-mediated signaling pathway activities and compared them to the pathways activated by Δ9-tetrahydrocannabinol (Δ9-THC). We provide evidence that activation of CB1R by HHC ligands is only broadly comparable to those mediated by Δ9-THC, and that both HHC epimers have unique properties. Together with the greater chemical stability of HHC compared to Δ9-THC, these molecules have a potential to become a part of modern medicine.
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Affiliation(s)
- Oleh Durydivka
- Institute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20, Prague 4, Czech Republic.
- Forensic Laboratory of Biologically Active Substances, Department of Chemistry of Natural Compounds, University of Chemistry and Technology Prague, Technicka 3, Prague, Czech Republic.
| | - Petr Palivec
- Forensic Laboratory of Biologically Active Substances, Department of Chemistry of Natural Compounds, University of Chemistry and Technology Prague, Technicka 3, Prague, Czech Republic
| | - Matej Gazdarica
- Institute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20, Prague 4, Czech Republic
| | - Ken Mackie
- Department of Psychological and Brain Sciences, Gill Center for Molecular Bioscience, Indiana University, 1101 E. 10th St., Bloomington, IN, 47405, USA
| | - Jaroslav Blahos
- Institute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20, Prague 4, Czech Republic
| | - Martin Kuchar
- Forensic Laboratory of Biologically Active Substances, Department of Chemistry of Natural Compounds, University of Chemistry and Technology Prague, Technicka 3, Prague, Czech Republic.
- Psychedelic Research Center, National Institute of Mental Health, Topolová 748, Klecany, Czech Republic.
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Blanes-García M, Marinović Z, Herranz-Jusdado JG, Xie X, Ferrão L, Gallego V, Pérez L, Baloch AR, Horváth Á, Pšenička M, Asturiano JF, Morini M. Characterization of potential spermatogonia biomarker genes in the European eel (Anguilla anguilla). Fish Physiol Biochem 2024:10.1007/s10695-024-01338-1. [PMID: 38639895 DOI: 10.1007/s10695-024-01338-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 03/22/2024] [Indexed: 04/20/2024]
Abstract
Identification of specific molecular markers for spermatogonial stem cells in teleost is crucial for enhancing the efficacy of reproductive biotechnologies in aquaculture, such as transplantation and surrogate production in fishes. Since it is not yet possible to distinguish spermatogonial stem cells of European eel (Anguilla anguilla) using specific molecular markers, we isolated spermatogonial cells from immature European eels to find these potential markers. We attempted this by studying three candidate genes: vasa, nanos2, and dnd1. Two vasa (vasa1 and vasa2) genes, nanos2, and dnd1 were identified, characterized, and studied in the muscle, testis, and isolated spermatogonia. Our results showed that vasa1 and vasa2 had the highest levels of expression when measured by qPCR. In situ hybridization and immunochemistry assays showed that the four genes were localized explicitly in type A spermatogonia. However, vasa1 and vasa2 exhibited stronger signals in the immature testicular tissue than the other two potential markers. According to this, vasa1 and vasa2 were found to be the most effective markers for spermatogonial cells in the European eel.
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Affiliation(s)
- Marta Blanes-García
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain
| | - Zoran Marinović
- Department of Aquaculture, Institute of Aquaculture and Environmental Safety, Hungarian University of Agriculture and Life Sciences, Páter Károly U. 1, 2100, Gödöllő, Hungary
| | - Juan Germán Herranz-Jusdado
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain
| | - Xuan Xie
- Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in Ceske Budejovice, Zátiší 728/II, 389 25, Vodňany, Czech Republic
| | - Leonor Ferrão
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain
| | - Victor Gallego
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain
| | - Luz Pérez
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain
| | - Abdul Rasheed Baloch
- Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in Ceske Budejovice, Zátiší 728/II, 389 25, Vodňany, Czech Republic
| | - Ákos Horváth
- Department of Aquaculture, Institute of Aquaculture and Environmental Safety, Hungarian University of Agriculture and Life Sciences, Páter Károly U. 1, 2100, Gödöllő, Hungary
| | - Martin Pšenička
- Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in Ceske Budejovice, Zátiší 728/II, 389 25, Vodňany, Czech Republic
| | - Juan F Asturiano
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain.
| | - Marina Morini
- Grupo de Acuicultura y Biodiversidad, Instituto de Ciencia y Tecnología Animal, Universitat Politècnica de València, Camino de Vera S/N, 46022, Valencia, Spain
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Thielemann-Kühn N, Amrhein T, Bronsch W, Jana S, Pontius N, Engel RY, Miedema PS, Legut D, Carva K, Atxitia U, van Kuiken BE, Teichmann M, Carley RE, Mercadier L, Yaroslavtsev A, Mercurio G, Le Guyader L, Agarwal N, Gort R, Scherz A, Dziarzhytski S, Brenner G, Pressacco F, Wang RP, Schunck JO, Sinha M, Beye M, Chiuzbăian GS, Oppeneer PM, Weinelt M, Schüßler-Langeheine C. Optical control of 4 f orbital state in rare-earth metals. Sci Adv 2024; 10:eadk9522. [PMID: 38630818 PMCID: PMC11023516 DOI: 10.1126/sciadv.adk9522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 03/14/2024] [Indexed: 04/19/2024]
Abstract
A change of orbital state alters the coupling between ions and their surroundings drastically. Orbital excitations are hence key to understand and control interaction of ions. Rare-earth elements with strong magneto-crystalline anisotropy (MCA) are important ingredients for magnetic devices. Thus, control of their localized 4f magnetic moments and anisotropy is one major challenge in ultrafast spin physics. With time-resolved x-ray absorption and resonant inelastic scattering experiments, we show for Tb metal that 4f-electronic excitations out of the ground-state multiplet occur after optical pumping. These excitations are driven by inelastic 5d-4f-electron scattering, altering the 4f-orbital state and consequently the MCA with important implications for magnetization dynamics in 4f-metals and more general for the excitation of localized electronic states in correlated materials.
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Affiliation(s)
- Nele Thielemann-Kühn
- Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
| | - Tim Amrhein
- Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
| | - Wibke Bronsch
- Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
- Elettra-Sincrotrone Trieste S.C.p.A., Strada statale 14 – km 163,5, 34149 Basovizza, Trieste, Italy
| | - Somnath Jana
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Albert-Einstein-Str. 15, 12489 Berlin, Germany
| | - Niko Pontius
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Albert-Einstein-Str. 15, 12489 Berlin, Germany
| | - Robin Y. Engel
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Piter S. Miedema
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Dominik Legut
- VSB - Technical University Ostrava, IT4Innovations, 708 00 Ostrava, Czech Republic
- Charles University, Faculty of Mathematics and Physics, DCMP, 12116 Prague 2, Czech Republic
- Department of Condensed Matter Physics, Faculty of Mathematics and Physics, Charles University, CZ-121 16 Prague, Czech Republic
| | - Karel Carva
- Charles University, Faculty of Mathematics and Physics, DCMP, 12116 Prague 2, Czech Republic
| | - Unai Atxitia
- Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
- Instituto de Ciencia de Materiales de Madrid, CSIC, Cantoblanco, 28049 Madrid, Spain
| | | | | | | | | | - Alexander Yaroslavtsev
- European XFEL, Holzkoppel 4, 22869 Schenefeld, Germany
- Uppsala University, Department of Physics and Astronomy, P.O. Box 516, 75120 Uppsala, Sweden
| | | | | | - Naman Agarwal
- European XFEL, Holzkoppel 4, 22869 Schenefeld, Germany
| | - Rafael Gort
- European XFEL, Holzkoppel 4, 22869 Schenefeld, Germany
| | - Andres Scherz
- European XFEL, Holzkoppel 4, 22869 Schenefeld, Germany
| | | | - Günter Brenner
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Federico Pressacco
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Ru-Pan Wang
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Universität Hamburg, Physics Department, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Jan O. Schunck
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Universität Hamburg, Physics Department, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Mangalika Sinha
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Martin Beye
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Gheorghe S. Chiuzbăian
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement,75005 Paris, France
| | - Peter M. Oppeneer
- Uppsala University, Department of Physics and Astronomy, P.O. Box 516, 75120 Uppsala, Sweden
| | - Martin Weinelt
- Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
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Kovacik M, Nowicka A, Zwyrtková J, Strejčková B, Vardanega I, Esteban E, Pasha A, Kaduchová K, Krautsova M, Červenková M, Šafář J, Provart NJ, Simon R, Pecinka A. The transcriptome landscape of developing barley seeds. Plant Cell 2024:koae095. [PMID: 38635902 DOI: 10.1093/plcell/koae095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 03/05/2024] [Indexed: 04/20/2024]
Abstract
Cereal grains are an important source of food and feed. To provide comprehensive spatiotemporal information about biological processes in developing seeds of cultivated barley (Hordeum vulgare L. subsp. vulgare), we performed a transcriptomic study of the embryo, endosperm, and seed maternal tissues collected from grains 4-32 days after pollination. Weighted gene co-expression network and motif enrichment analyses identified specific groups of genes and transcription factors (TFs) potentially regulating barley seed tissue development. We defined a set of tissue-specific marker genes and families of TFs for functional studies of the pathways controlling barley grain development. Assessing selected groups of chromatin regulators revealed that epigenetic processes are highly dynamic and likely play a major role during barley endosperm development. The repressive H3K27me3 modification is globally reduced in endosperm tissues and at specific genes related to development and storage compounds. Altogether, this atlas uncovers the complexity of developmentally regulated gene expression in developing barley grains.
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Affiliation(s)
- Martin Kovacik
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Šlechtitelů 27, 779 00 Olomouc, Czech Republic
| | - Anna Nowicka
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
- Franciszek Górski Institute of Plant Physiology Polish Academy of Sciences, Niezapominajek 21, 30 239 Kraków, Poland
| | - Jana Zwyrtková
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
| | - Beáta Strejčková
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
| | - Isaia Vardanega
- Institute for Developmental Genetics, Heinrich-Heine-University, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Eddi Esteban
- Department of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON M5S 3B2, Canada
| | - Asher Pasha
- Department of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON M5S 3B2, Canada
| | - Kateřina Kaduchová
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
| | - Maryna Krautsova
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
| | - Marie Červenková
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
| | - Jan Šafář
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
| | - Nicholas J Provart
- Department of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON M5S 3B2, Canada
| | - Rüdiger Simon
- Institute for Developmental Genetics, Heinrich-Heine-University, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Ales Pecinka
- Institute of Experimental Botany, Czech Acad Sci, Centre of Plant Structural and Functional Genomics, Šlechtitelů 31, 779 00 Olomouc, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Šlechtitelů 27, 779 00 Olomouc, Czech Republic
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Crhak Khaitova L, Mikulkova P, Pecinkova J, Kalidass M, Heckmann S, Lermontova I, Riha K. Heat stress impairs centromere structure and segregation of meiotic chromosomes in Arabidopsis. eLife 2024; 12:RP90253. [PMID: 38629825 PMCID: PMC11023694 DOI: 10.7554/elife.90253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/19/2024] Open
Abstract
Heat stress is a major threat to global crop production, and understanding its impact on plant fertility is crucial for developing climate-resilient crops. Despite the known negative effects of heat stress on plant reproduction, the underlying molecular mechanisms remain poorly understood. Here, we investigated the impact of elevated temperature on centromere structure and chromosome segregation during meiosis in Arabidopsis thaliana. Consistent with previous studies, heat stress leads to a decline in fertility and micronuclei formation in pollen mother cells. Our results reveal that elevated temperature causes a decrease in the amount of centromeric histone and the kinetochore protein BMF1 at meiotic centromeres with increasing temperature. Furthermore, we show that heat stress increases the duration of meiotic divisions and prolongs the activity of the spindle assembly checkpoint during meiosis I, indicating an impaired efficiency of the kinetochore attachments to spindle microtubules. Our analysis of mutants with reduced levels of centromeric histone suggests that weakened centromeres sensitize plants to elevated temperature, resulting in meiotic defects and reduced fertility even at moderate temperatures. These results indicate that the structure and functionality of meiotic centromeres in Arabidopsis are highly sensitive to heat stress, and suggest that centromeres and kinetochores may represent a critical bottleneck in plant adaptation to increasing temperatures.
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Affiliation(s)
| | | | | | - Manikandan Kalidass
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) GaterslebenGaterslebenGermany
| | - Stefan Heckmann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) GaterslebenGaterslebenGermany
| | - Inna Lermontova
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) GaterslebenGaterslebenGermany
| | - Karel Riha
- CEITEC Masaryk UniversityBrnoCzech Republic
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8
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Binmöller L, Volkert C, Kiefer C, Zühl L, Slawinska MW, Loreth A, Nauerth BH, Ibberson D, Martinez R, Mandakova TM, Zipper R, Schmidt A. Differential expression and evolutionary diversification of RNA helicases in Boechera sexual and apomictic reproduction. J Exp Bot 2024; 75:2451-2469. [PMID: 38263359 DOI: 10.1093/jxb/erae026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 01/22/2024] [Indexed: 01/25/2024]
Abstract
In higher plants, sexual reproduction is characterized by meiosis of the first cells of the germlines, and double fertilization of the egg and central cell after gametogenesis. In contrast, in apomicts of the genus Boechera, meiosis is omitted or altered and only the central cell requires fertilization, while the embryo forms parthenogenetically from the egg cell. To deepen the understanding of the transcriptional basis underlying these differences, we applied RNA-seq to compare expression in reproductive tissues of different Boechera accessions. This confirmed previous evidence of an enrichment of RNA helicases in plant germlines. Furthermore, few RNA helicases were differentially expressed in female reproductive ovule tissues harboring mature gametophytes from apomictic and sexual accessions. For some of these genes, we further found evidence for a complex recent evolutionary history. This included a homolog of Arabidopsis thaliana FASCIATED STEM4 (FAS4). In contrast to AtFAS4, which is a single-copy gene, FAS4 is represented by three homologs in Boechera, suggesting a potential for subfunctionalization to modulate reproductive development. To gain first insights into functional roles of FAS4, we studied Arabidopsis lines carrying mutant alleles. This identified the crucial importance of AtFAS4 for reproduction, as we observed developmental defects and arrest during male and female gametogenesis.
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Affiliation(s)
- Laura Binmöller
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - Christopher Volkert
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - Christiane Kiefer
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - Luise Zühl
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - Magdalena W Slawinska
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - Anna Loreth
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - Berit H Nauerth
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
| | - David Ibberson
- Deep Sequencing Core Facility, CellNetworks Excellence Cluster, Heidelberg University, Im Neuenheimer Feld 267, D-69120 Heidelberg, Germany
| | - Rafael Martinez
- Centre for Organismal Studies Heidelberg, Department of Developmental Biology, Heidelberg University, Im Neuenheimer Feld 230, D-69120, Heidelberg, Germany
| | - Terezie M Mandakova
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, Brno, 625 00, Czech Republic
| | - Reinhard Zipper
- Institute of Biology, Plant Evolutionary Biology, University of Hohenheim, Garbenstrasse 30, D-70599 Stuttgart, Germany
| | - Anja Schmidt
- Centre for Organismal Studies Heidelberg, Department of Biodiversity and Plant Systematics, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany
- Institute of Biology, Plant Evolutionary Biology, University of Hohenheim, Garbenstrasse 30, D-70599 Stuttgart, Germany
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9
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Leroy H, Bowie RCK, Rubáčová L, Matysioková B, Remeš V. A late burst of colour evolution in a radiation of songbirds (Passeriformes: Parulidae) suggests secondary contact drives signal divergence. J Evol Biol 2024; 37:401-413. [PMID: 38373243 DOI: 10.1093/jeb/voae023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 01/30/2024] [Accepted: 02/19/2024] [Indexed: 02/21/2024]
Abstract
Evolutionary radiations provide important insights into species diversification, which is especially true of adaptive radiations. New World wood warblers (Parulidae) are a family of small, insectivorous, forest-dwelling passerine birds, often considered an exemplar of adaptive radiation due to their rapid diversification followed by a slowdown. However, they deviate from the expectations of an adaptive radiation scenario due to the lack of conspicuous morphological and ecological differentiation. We fitted several macroevolutionary models to trait data in 105 species of wood warblers. We tested whether morphological traits underwent an early burst of evolution (suggesting adaptation to new ecological niches in adaptive radiations) and whether song and colour underwent a diversity-dependent acceleration of trait evolutionary rate (consistent with reproductive interference driving signal evolution). Morphology and song evolved gradually under stabilizing selection, suggesting niche conservatism, with morphology possibly acting as a constraint on song evolution. In contrast, many feather colour traits underwent a diversity-dependent burst of evolution occurring late in the clade's history. We suggest that a two-step process has led to the remarkable diversification of wood warblers. First, their early diversification probably proceeded by allopatric speciation. Second, feather colour divergence likely occurred during secondary contact after range expansion. This diversification of signalling traits might have facilitated species coexistence, in combination with behavioural niche partitioning. Wood warblers seem to present characteristics of both adaptive and non-adaptive radiations.
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Affiliation(s)
- Hélène Leroy
- Department of Ecology, Charles University, Prague, Czech Republic
| | - Rauri C K Bowie
- Department of Integrative Biology, Museum of Vertebrate Zoology, University of California, Berkeley, USA
| | - Lucia Rubáčová
- Department of Zoology, Comenius University, Bratislava, Slovakia
| | | | - Vladimír Remeš
- Department of Ecology, Charles University, Prague, Czech Republic
- Department of Zoology, Palacky University, Olomouc, Czech Republic
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10
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Homola M, Büttner CR, Füzik T, Křepelka P, Holbová R, Nováček J, Chaillet ML, Žák J, Grybchuk D, Förster F, Wilson WH, Schroeder DC, Plevka P. Structure and replication cycle of a virus infecting climate-modulating alga Emiliania huxleyi. Sci Adv 2024; 10:eadk1954. [PMID: 38598627 PMCID: PMC11006232 DOI: 10.1126/sciadv.adk1954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 03/06/2024] [Indexed: 04/12/2024]
Abstract
The globally distributed marine alga Emiliania huxleyi has cooling effect on the Earth's climate. The population density of E. huxleyi is restricted by Nucleocytoviricota viruses, including E. huxleyi virus 201 (EhV-201). Despite the impact of E. huxleyi viruses on the climate, there is limited information about their structure and replication. Here, we show that the dsDNA genome inside the EhV-201 virion is protected by an inner membrane, capsid, and outer membrane. EhV-201 virions infect E. huxleyi by using fivefold vertices to bind to and fuse the virus' inner membrane with the cell plasma membrane. Progeny virions assemble in the cytoplasm at the surface of endoplasmic reticulum-derived membrane segments. Genome packaging initiates synchronously with the capsid assembly and completes through an aperture in the forming capsid. The genome-filled capsids acquire an outer membrane by budding into intracellular vesicles. EhV-201 infection induces a loss of surface protective layers from E. huxleyi cells, which enables the continuous release of virions by exocytosis.
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Affiliation(s)
- Miroslav Homola
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Carina R. Büttner
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Tibor Füzik
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Pavel Křepelka
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Radka Holbová
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Jiří Nováček
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Marten L. Chaillet
- Bijvoet Centre for Biomolecular Research, Utrecht University, Utrecht, Netherlands
| | - Jakub Žák
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Brno, Czech Republic
| | - Danyil Grybchuk
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Friedrich Förster
- Bijvoet Centre for Biomolecular Research, Utrecht University, Utrecht, Netherlands
| | - William H. Wilson
- Marine Biological Association, Plymouth, UK
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
| | | | - Pavel Plevka
- Central European Institute of Technology, Masaryk University, Brno, Czech Republic
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11
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Bourland W, Pomahač O, Poláková K, Čepička I. Redescription and molecular characterization of Loxocephalus luridus Eberhard, 1862 based on Czech populations: Implications for order Loxocephalida Jankowski, 1980. J Eukaryot Microbiol 2024:e13028. [PMID: 38613145 DOI: 10.1111/jeu.13028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 03/12/2024] [Accepted: 03/23/2024] [Indexed: 04/14/2024]
Abstract
The phylogenetic and taxonomic affinities of lineages currently assigned to the non-monophyletic ciliate order Loxocephalida Jankowski (1980) within subclass Scuticociliatia Small (1967) remain unresolved. In the current study, we redescribe the morphology of the type species, Loxocephalus luridus Eberhard (1862) based on two Czech populations and include the first scanning and transmission electron microscopy images of the species. We provide the first 18S rRNA gene sequences for L. luridus and consider its phylogenetic position. Our results support the separation of Dexiotricha from Loxocephalus; however, the former genus is recovered as non-monophyletic. The monophyly of genus Dexiotricha and that of Loxocephalus + Dexiotricha is rejected. Loxocephalus luridus, together with Dexiotricha species, nests within a fully supported clade with Conchophthirus species, long presumed to belong to the Pleuronematida. Haptophrya is recovered as sister to this clade. The monophyly of the Astomatia Schewiakoff (1896) including Haptophrya is rejected. No clear morphologic synapomorphy is identified for the fully supported clade consisting of Haptophrya, Dexiotricha, Loxocephalus, and Conchophthirus.
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Affiliation(s)
- William Bourland
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Ondřej Pomahač
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Kateřina Poláková
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Ivan Čepička
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
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12
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Kalfusová R, Herklotz V, Kumke K, Houben A, Kovařík A, Ritz CM, Lunerová J. Epigenetic histone H3 phosphorylation marks discriminate between univalent- and bivalent-forming chromosomes during canina asymmetrical meiosis. Ann Bot 2024; 133:435-446. [PMID: 38127060 PMCID: PMC11006542 DOI: 10.1093/aob/mcad198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 12/18/2023] [Indexed: 12/23/2023]
Abstract
BACKGROUND AND AIMS Dogroses (Rosa sect. Caninae) are mostly pentaploid, bearing 2n = 5x = 35 chromosomes in somatic cells. They evolved a unique form of asymmetrical meiosis characterized by two types of chromosomes: (1) chromosomes forming bivalents and distributed in the normal sexual way; and (2) chromosomes occurring as univalents and transferred by a female gamete only. In the mature pollen of pentaploid species, seven bivalent-derived chromosomes are transmitted to offspring, and 21 unpaired univalent chromosomes are eliminated during microsporogenesis. To discriminate between bivalent- and univalent-forming chromosomes, we studied histone H3 phosphorylation patterns regulating meiotic chromosome condensation and segregation. METHODS We analysed histone modification patterns during male canina meiosis in two representative dogrose species, 5x Rosa canina and 5x Rosa rubiginosa, by immunohistochemical and molecular cytogenetics approaches. Immunostaining of meiotic cells included α-tubulin, histone H3 phosphorylation (H3S10p, H3S28p and H3T3p) and methylation (H3K4me3 and H3K27me3) marks. In addition, fluorescent in situ hybridization was carried out with an 18S rDNA probe. KEY RESULTS In the first meiotic division, univalent chromosomes underwent equational division into chromatids, while homologues in bivalents were segregated as regular dyads. In diakinesis, bivalent chromosomes displayed strong H3 phosphorylation signals in proximal regions, spreading to the rest of the chromosome. In contrast, in univalents, the H3 phosphorylation signals were weaker, occurring mostly outside proximal regions largely overlapping with the H3K4me3 signals. Reduced phosphorylation was associated with relative under-condensation of the univalent chromosomes, particularly at early diakinesis. CONCLUSIONS We hypothesize that the absence of pairing and/or recombination in univalent chromosomes negatively affects the histone H3 phosphorylation of their chromatin and perhaps the loading of meiotic-specific cohesins. This apparently destabilizes cohesion of sister chromatids, leading to their premature split in the first meiotic division.
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Affiliation(s)
- Radka Kalfusová
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 00 Brno, Czech Republic
| | - Veit Herklotz
- Senckenberg Museum of Natural History, Senckenberg – Member of the Leibniz Association, Am Museum 1, 02826 Görlitz, Germany
| | - Katrin Kumke
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466 Stadt Seeland, Germany
| | - Andreas Houben
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466 Stadt Seeland, Germany
| | - Aleš Kovařík
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 00 Brno, Czech Republic
| | - Christiane M Ritz
- Senckenberg Museum of Natural History, Senckenberg – Member of the Leibniz Association, Am Museum 1, 02826 Görlitz, Germany
- Chair of Biodiversity of Higher Plants, Technical University Dresden, D-01069, Dresden, Germany
| | - Jana Lunerová
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 00 Brno, Czech Republic
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13
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Bosch J, Dobbler PT, Větrovský T, Tláskal V, Baldrian P, Brabcová V. Decomposition of Fomes fomentatius fruiting bodies - transition of healthy living fungus into a decayed bacteria-rich habitat is primarily driven by Arthropoda. FEMS Microbiol Ecol 2024; 100:fiae044. [PMID: 38640440 PMCID: PMC11030162 DOI: 10.1093/femsec/fiae044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 03/06/2024] [Accepted: 03/28/2024] [Indexed: 04/21/2024] Open
Abstract
Fomes fomentarius is a widespread, wood-rotting fungus of temperate, broadleaved forests. Although the fruiting bodies of F. fomentarius persist for multiple years, little is known about its associated microbiome or how these recalcitrant structures are ultimately decomposed. Here we used metagenomics and metatranscriptomics to analyse the microbial community associated with healthy living and decomposing F. fomentarius fruiting bodies to assess the functional potential of the fruiting body-associated microbiome and to determine the main players involved in fruiting body decomposition. F. fomentarius sequences in the metagenomes were replaced by bacterial sequences as the fruiting body decomposed. Most CAZymes expressed in decomposing fruiting bodies targeted components of the fungal cell wall with almost all chitin-targeting sequences, plus a high proportion of beta-glucan-targeting sequences, belonging to Arthropoda. We suggest that decomposing fruiting bodies of F. fomentarius represent a habitat rich in bacteria, while its decomposition is primarily driven by Arthropoda. Decomposing fruiting bodies thus represent a specific habitat supporting both microorganisms and microfauna.
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Affiliation(s)
- Jason Bosch
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia
| | - Priscila Thiago Dobbler
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia
| | - Tomáš Větrovský
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia
| | - Vojtěch Tláskal
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia
| | - Petr Baldrian
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia
| | - Vendula Brabcová
- Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia
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14
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Čihák M, Horáková H, Vyhnálek M, Veverová K, Matušková V, Laczó J, Hort J, Nikolai T. Evaluation of Differential Diagnostics Potential of Uniform Data Set 2 Neuropsychology Battery Using Alzheimer's Disease Biomarkers. Arch Clin Neuropsychol 2024:acae028. [PMID: 38582748 DOI: 10.1093/arclin/acae028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 02/20/2024] [Accepted: 03/12/2024] [Indexed: 04/08/2024] Open
Abstract
OBJECTIVE This study aims to evaluate the efficacy of the Uniform Data Set (UDS) 2 battery in distinguishing between individuals with mild cognitive impairment (MCI) attributable to Alzheimer's disease (MCI-AD) and those with MCI due to other causes (MCI-nonAD), based on contemporary AT(N) biomarker criteria. Despite the implementation of the novel UDS 3 battery, the UDS 2 battery is still used in several non-English-speaking countries. METHODS We employed a cross-sectional design. A total of 113 Czech participants with MCI underwent a comprehensive diagnostic assessment, including cerebrospinal fluid biomarker evaluation, resulting in two groups: 45 individuals with prodromal AD (A+T+) and 68 participants with non-Alzheimer's pathological changes or normal AD biomarkers (A-). Multivariable logistic regression analyses were employed with neuropsychological test scores and demographic variables as predictors and AD status as an outcome. Model 1 included UDS 2 scores that differed between AD and non-AD groups (Logical Memory delayed recall), Model 2 employed also Letter Fluency and Rey's Auditory Verbal Learning Test (RAVLT). The two models were compared using area under the receiver operating characteristic curves. We also created separate logistic regression models for each of the UDS 2 scores. RESULTS Worse performance in delayed recall of Logical Memory significantly predicted the presence of positive AD biomarkers. In addition, the inclusion of Letter Fluency RAVLT into the model significantly enhanced its discriminative capacity. CONCLUSION Our findings demonstrate that using Letter Fluency and RAVLT alongside the UDS 2 battery can enhance its potential for differential diagnostics.
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Affiliation(s)
- Martin Čihák
- Department of Neurology, First Faculty of Medicine, Charles University, 121 08 Prague, Czech Republic
| | - Hana Horáková
- Department of Neurology, Second Faculty of Medicine and Motol University Hospital, Charles University, 150 06 Prague, Czech Republic
- Department of Clinical Psychology, Motol University Hospital, 150 06 Prague, Czech Republic
| | - Martin Vyhnálek
- Department of Neurology, First Faculty of Medicine, Charles University, 121 08 Prague, Czech Republic
| | - Kateřina Veverová
- Department of Neurology, Second Faculty of Medicine and Motol University Hospital, Charles University, 150 06 Prague, Czech Republic
- Department of Psychology, Faculty of Arts, Charles University, 116 38 Prague, Czech Republic
| | - Veronika Matušková
- Department of Neurology, Second Faculty of Medicine and Motol University Hospital, Charles University, 150 06 Prague, Czech Republic
| | - Jan Laczó
- Department of Neurology, Second Faculty of Medicine and Motol University Hospital, Charles University, 150 06 Prague, Czech Republic
| | - Jakub Hort
- Department of Neurology, Second Faculty of Medicine and Motol University Hospital, Charles University, 150 06 Prague, Czech Republic
| | - Tomáš Nikolai
- Department of Neurology, Second Faculty of Medicine and Motol University Hospital, Charles University, 150 06 Prague, Czech Republic
- Department of Clinical Psychology, Motol University Hospital, 150 06 Prague, Czech Republic
- Department of Psychology, Faculty of Arts, Charles University, 116 38 Prague, Czech Republic
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15
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Sauer PV, Cupellini L, Sutter M, Bondanza M, Domínguez Martin MA, Kirst H, Bína D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polívka7 T, Mennucci B, Kerfeld CA. Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. Sci Adv 2024; 10:eadk7535. [PMID: 38578996 PMCID: PMC10997198 DOI: 10.1126/sciadv.adk7535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 03/04/2024] [Indexed: 04/07/2024]
Abstract
Cyanobacteria use large antenna complexes called phycobilisomes (PBSs) for light harvesting. However, intense light triggers non-photochemical quenching, where the orange carotenoid protein (OCP) binds to PBS, dissipating excess energy as heat. The mechanism of efficiently transferring energy from phycocyanobilins in PBS to canthaxanthin in OCP remains insufficiently understood. Using cryo-electron microscopy, we unveiled the OCP-PBS complex structure at 1.6- to 2.1-angstrom resolution, showcasing its inherent flexibility. Using multiscale quantum chemistry, we disclosed the quenching mechanism. Identifying key protein residues, we clarified how canthaxanthin's transition dipole moment in its lowest-energy dark state becomes large enough for efficient energy transfer from phycocyanobilins. Our energy transfer model offers a detailed understanding of the atomic determinants of light harvesting regulation and antenna architecture in cyanobacteria.
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Affiliation(s)
- Paul V. Sauer
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
| | - Lorenzo Cupellini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - Markus Sutter
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Mattia Bondanza
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - María Agustina Domínguez Martin
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Henning Kirst
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - David Bína
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
| | | | | | - Basil J. Greber
- Division of Structural Biology, The Institute of Cancer Research, London SW7 3RP, UK
| | - Eva Nogales
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA
| | - Tomáš Polívka7
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
- Thermo Fisher Scientific, Eindhoven, Netherlands
- Division of Structural Biology, The Institute of Cancer Research, London SW7 3RP, UK
- Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - Cheryl A. Kerfeld
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
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16
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Vokoun D, Lo YH, Heczko O, Samal S, Hu CT. Microstructure and Magnetic Properties of Fe67.6-Pd32-In0.4 (at.%) Shape Memory Melt-Spun Ribbons. Materials (Basel) 2024; 17:1674. [PMID: 38612186 PMCID: PMC11012876 DOI: 10.3390/ma17071674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 03/27/2024] [Accepted: 04/02/2024] [Indexed: 04/14/2024]
Abstract
Fe-~30 at.%Pd is a ferromagnetic shape memory alloy (SMA) with a reversible thermoelastic fcc-fct phase transformation. The advantage of adding a small amount of Indium to Fe-Pd SMAs is, among other things, the upward shift of the transformation temperatures, which allows us to maintain the material in the martensitic state (fct structure) at room temperature. In this work, we study the microstructure and the magnetic properties of nominally Fe67.6-Pd32-In0.4 (at.%) melt-spun ribbons. Energy-dispersive spectroscopy analysis showed a certain level of non-uniformity of Indium distribution in the as-spun ribbon. However, the attempt to homogenize the ribbon by annealing at 1273 K for 120 h resulted in an unfavoured structural change to bct martensite. Magneto strains induced by a 9 kOe magnetic field reached over 400 ppm for certain field orientations, which is around four times more than the magneto strains of near-binary Fe-Pd shape memory alloys.
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Affiliation(s)
- David Vokoun
- FZU—Institute of Physics of the Czech Academy of Sciences, Na Slovance 1999/2, 182 00 Prague, Czech Republic; (O.H.); (S.S.)
| | - Yuan-Hung Lo
- Department of Materials Science and Engineering, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu 300044, Taiwan
| | - Oleg Heczko
- FZU—Institute of Physics of the Czech Academy of Sciences, Na Slovance 1999/2, 182 00 Prague, Czech Republic; (O.H.); (S.S.)
| | - Sneha Samal
- FZU—Institute of Physics of the Czech Academy of Sciences, Na Slovance 1999/2, 182 00 Prague, Czech Republic; (O.H.); (S.S.)
| | - Chen-Ti Hu
- Department of Materials Science and Engineering, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu 300044, Taiwan
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Paule-Mercado MC, Rabaneda-Bueno R, Porcal P, Kopacek M, Huneau F, Vystavna Y. Climate and land use shape the water balance and water quality in selected European lakes. Sci Rep 2024; 14:8049. [PMID: 38580788 PMCID: PMC10997787 DOI: 10.1038/s41598-024-58401-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 03/28/2024] [Indexed: 04/07/2024] Open
Abstract
This study provides insights into factors that influence the water balance of selected European lakes, mainly in Central Europe, and their implications for water quality. An analysis of isotopic, chemical and land use data using statistical and artificial intelligence models showed that climate, particularly air temperature and precipitation, played a key role in intensifying evaporation losses from the lakes. Water balance was also affected by catchment factors, notably groundwater table depth. The study shows that lakes at lower altitudes with shallow depths and catchments dominated by urban or crop cover were more sensitive to water balance changes. These lakes had higher evaporation-to-inflow ratios and increased concentrations of total nitrogen in the water. On the other hand, lakes at higher elevations with deeper depths and prevailing forest cover in the catchment were less sensitive to water balance changes. These lakes, which are often of glacial origin, were characterized by lower evaporation losses and thus better water quality in terms of total nitrogen concentrations. Understanding connections between water balance and water quality is crucial for effective lake management and the preservation of freshwater ecosystems.
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Affiliation(s)
- Ma Cristina Paule-Mercado
- Biology Centre, Institute of Hydrobiology, Academy of Sciences of the Czech Republic, Na Sádkách 7, 37005, České Budějovice, Czech Republic
| | - Rubén Rabaneda-Bueno
- Biology Centre, Institute of Hydrobiology, Academy of Sciences of the Czech Republic, Na Sádkách 7, 37005, České Budějovice, Czech Republic
| | - Petr Porcal
- Biology Centre, Institute of Hydrobiology, Academy of Sciences of the Czech Republic, Na Sádkách 7, 37005, České Budějovice, Czech Republic
| | - Marek Kopacek
- Biology Centre, Institute of Hydrobiology, Academy of Sciences of the Czech Republic, Na Sádkách 7, 37005, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 1760, 370 05, České Budějovice, Czech Republic
| | - Frederic Huneau
- Département d'Hydrogéologie, Université de Corse Pascal Paoli, BP52, 20250, Corte, France
- Centre National de la Recherche Scientifique (CNRS), UMR 6134 SPE, 20250, Corte, France
| | - Yuliya Vystavna
- Biology Centre, Institute of Hydrobiology, Academy of Sciences of the Czech Republic, Na Sádkách 7, 37005, České Budějovice, Czech Republic.
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18
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Niaei N, Hassanpour S, Petr J. Chiral resolution of cationic piperazine derivatives by capillary electrophoresis using sulfated β-cyclodextrin. Electrophoresis 2024. [PMID: 38576224 DOI: 10.1002/elps.202300271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 03/14/2024] [Accepted: 03/22/2024] [Indexed: 04/06/2024]
Abstract
This research focuses on the development and validation of a capillary electrophoresis (CE) method for the chiral separation of three H1-antihistamine drugs chlorcyclizine, norchlorcyclizine, and neobenodine using sulfated β-cyclodextrin (S-β-CD) as the chiral selector. The study explores various factors influencing the separation efficiency, including CD concentration, organic modifier content, voltage application, and buffer pH. Optimal conditions were identified as a 100 mM phosphate buffer (pH 6.0) with 34 mg mL-1 S-β-CD and 40% (v/v) methanol. The method demonstrated excellent linearity in calibration curves, with coefficients of determination exceeding 0.99 for each enantiomer. Precision studies revealed good intra- and inter-day precision for migration times and peak areas. The limits of detection and quantification for the analytes were within the ranges of 5.9-11.4 and 18-34.6 µmol L-1, respectively. Overall, the developed CE method offers a robust and precise approach for the chiral separation of H1-antihistamine drugs, holding promise for pharmaceutical applications.
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Affiliation(s)
- Navid Niaei
- Department of Analytical Chemistry, Faculty of Science, Palacký University Olomouc, Olomouc, Czech Republic
| | - Soodabeh Hassanpour
- Department of Analytical Chemistry, Faculty of Science, Palacký University Olomouc, Olomouc, Czech Republic
| | - Jan Petr
- Department of Analytical Chemistry, Faculty of Science, Palacký University Olomouc, Olomouc, Czech Republic
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19
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Truman JW, Riddiford LM, Konopova B, Nouzova M, Noriega FG, Herko M. The embryonic role of juvenile hormone in the firebrat, Thermobia domestica, reveals its function before its involvement in metamorphosis. eLife 2024; 12:RP92643. [PMID: 38568859 PMCID: PMC10994664 DOI: 10.7554/elife.92643] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024] Open
Abstract
To gain insights into how juvenile hormone (JH) came to regulate insect metamorphosis, we studied its function in the ametabolous firebrat, Thermobia domestica. Highest levels of JH occur during late embryogenesis, with only low levels thereafter. Loss-of-function and gain-of-function experiments show that JH acts on embryonic tissues to suppress morphogenesis and cell determination and to promote their terminal differentiation. Similar embryonic actions of JH on hemimetabolous insects with short germ band embryos indicate that JH's embryonic role preceded its derived function as the postembryonic regulator of metamorphosis. The postembryonic expansion of JH function likely followed the evolution of flight. Archaic flying insects were considered to lack metamorphosis because tiny, movable wings were evident on the thoraces of young juveniles and their positive allometric growth eventually allowed them to support flight in late juveniles. Like in Thermobia, we assume that these juveniles lacked JH. However, a postembryonic reappearance of JH during wing morphogenesis in the young juvenile likely redirected wing development to make a wing pad rather than a wing. Maintenance of JH then allowed wing pad growth and its disappearance in the mature juvenile then allowed wing differentiation. Subsequent modification of JH action for hemi- and holometabolous lifestyles are discussed.
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Affiliation(s)
- James W Truman
- Friday Harbor Laboratories, University of WashingtonFriday HarborUnited States
- Department of Biology, University of WashingtonSeattleUnited States
| | - Lynn M Riddiford
- Friday Harbor Laboratories, University of WashingtonFriday HarborUnited States
- Department of Biology, University of WashingtonSeattleUnited States
| | - Barbora Konopova
- Department of Zoology, Faculty of Science, University of South BohemiaCeske BudejoviceCzech Republic
- Institute of Entomology, Biology Centre of the Czech Academy of SciencesCeske BudejoviceCzech Republic
| | - Marcela Nouzova
- Institute of Parasitology, Biology Centre of the Czech Academy of SciencesCeske BudejoviceCzech Republic
| | - Fernando G Noriega
- Department of Biological Sciences and BSI, Florida International UniversityMiamiUnited States
- Department of Parasitology, Faculty of Science, University of South BohemiaCeské BudejoviceCzech Republic
| | - Michelle Herko
- Friday Harbor Laboratories, University of WashingtonFriday HarborUnited States
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20
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Karl K, Del Piccolo N, Light T, Roy T, Deduja P, Ursachi VC, Fafilek B, Krejci P, Hristova K. Ligand bias underlies differential signaling of multiple FGFs via FGFR1. eLife 2024; 12:RP88144. [PMID: 38568193 PMCID: PMC10990489 DOI: 10.7554/elife.88144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024] Open
Abstract
The differential signaling of multiple FGF ligands through a single fibroblast growth factor (FGF) receptor (FGFR) plays an important role in embryonic development. Here, we use quantitative biophysical tools to uncover the mechanism behind differences in FGFR1c signaling in response to FGF4, FGF8, and FGF9, a process which is relevant for limb bud outgrowth. We find that FGF8 preferentially induces FRS2 phosphorylation and extracellular matrix loss, while FGF4 and FGF9 preferentially induce FGFR1c phosphorylation and cell growth arrest. Thus, we demonstrate that FGF8 is a biased FGFR1c ligand, as compared to FGF4 and FGF9. Förster resonance energy transfer experiments reveal a correlation between biased signaling and the conformation of the FGFR1c transmembrane domain dimer. Our findings expand the mechanistic understanding of FGF signaling during development and bring the poorly understood concept of receptor tyrosine kinase ligand bias into the spotlight.
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Affiliation(s)
- Kelly Karl
- Department of Materials Science and Engineering, Institute for NanoBioTechnology, and Program in Molecular Biophysics, Johns Hopkins UniversityBaltimoreUnited States
| | - Nuala Del Piccolo
- Department of Materials Science and Engineering, Institute for NanoBioTechnology, and Program in Molecular Biophysics, Johns Hopkins UniversityBaltimoreUnited States
| | - Taylor Light
- Department of Materials Science and Engineering, Institute for NanoBioTechnology, and Program in Molecular Biophysics, Johns Hopkins UniversityBaltimoreUnited States
| | - Tanaya Roy
- Department of Materials Science and Engineering, Institute for NanoBioTechnology, and Program in Molecular Biophysics, Johns Hopkins UniversityBaltimoreUnited States
| | - Pooja Deduja
- Department of Biology, Faculty of Medicine, Masaryk UniversityBrnoCzech Republic
- Institute of Animal Physiology and Genetics of the CASBrnoCzech Republic
| | - Vlad-Constantin Ursachi
- Department of Biology, Faculty of Medicine, Masaryk UniversityBrnoCzech Republic
- International Clinical Research Center, St. Anne's University HospitalBrnoCzech Republic
| | - Bohumil Fafilek
- Department of Biology, Faculty of Medicine, Masaryk UniversityBrnoCzech Republic
- Institute of Animal Physiology and Genetics of the CASBrnoCzech Republic
- International Clinical Research Center, St. Anne's University HospitalBrnoCzech Republic
| | - Pavel Krejci
- Department of Biology, Faculty of Medicine, Masaryk UniversityBrnoCzech Republic
- Institute of Animal Physiology and Genetics of the CASBrnoCzech Republic
- International Clinical Research Center, St. Anne's University HospitalBrnoCzech Republic
| | - Kalina Hristova
- Department of Materials Science and Engineering, Institute for NanoBioTechnology, and Program in Molecular Biophysics, Johns Hopkins UniversityBaltimoreUnited States
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21
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Mamo BG, Novotný J. Promotion of market-based sanitation in Ethiopia: a case study from Wolaita zone. Health Promot Int 2024; 39:daae034. [PMID: 38597720 PMCID: PMC11005767 DOI: 10.1093/heapro/daae034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024] Open
Abstract
Ethiopia increased the availability of latrines notably, but the sanitation facilities rarely meet hygienic standards. Therefore, the market-based sanitation (MBS) programme has been implemented across the country for nearly a decade to expand the market and boost the demand for hygienic sanitation products and services. While it does not seem that the MBS would bring any notable change in sanitation conditions so far, its implementation challenges are not adequately understood. To address this gap, this article delves into the grassroots-level implementation of MBS in the Wolaita zone. The study relies on qualitative data gathered through interviews with various stakeholders, examining both demand- and supply-side challenges. Some issues identified were external to MBS implementation, such as high inflation and an unstable political and security situation in Ethiopia. Additionally, the study reveals that more general deficiencies of the Ethiopian health extension program, including the stress and discouragement of local change agents (health extension workers, health development army members) due to workloads and low remuneration, have adversely impacted MBS delivery. The implementation of MBS has also not effectively addressed the affordability of hygienic sanitation products. On the supply side, economic constraints and organizational inefficiencies have hindered the development of the sanitation market, preventing it from reaching a critical mass. Our research suggests that MBS alone will not suffice to improve sanitation in Ethiopia.
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Affiliation(s)
- Biruk Getachew Mamo
- Department of Social Geography and Regional Development, Faculty of Science, Charles University, Albertov 6, 128 00 Prague 2, Czechia
| | - Josef Novotný
- Department of Social Geography and Regional Development, Faculty of Science, Charles University, Albertov 6, 128 00 Prague 2, Czechia
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22
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Bereta M, Teplan M, Zakar T, Vuviet H, Cifra M, Chafai DE. Biological autoluminescence enables effective monitoring of yeast cell electroporation. Biotechnol J 2024; 19:e2300475. [PMID: 38651262 DOI: 10.1002/biot.202300475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 04/03/2024] [Accepted: 04/05/2024] [Indexed: 04/25/2024]
Abstract
The application of pulsed electric fields (PEFs) is becoming a promising tool for application in biotechnology, and the food industry. However, real-time monitoring of the efficiency of PEF treatment conditions is challenging, especially at the industrial scale and in continuous production conditions. To overcome this challenge, we have developed a straightforward setup capable of real-time detection of yeast biological autoluminescence (BAL) during pulsing. Saccharomyces cerevisiae culture was exposed to 8 pulses of 100 µs width with electric field strength magnitude 2-7 kV cm-1. To assess the sensitivity of our method in detecting yeast electroporation, we conducted a comparison with established methods including impedance measurements, propidium iodide uptake, cell growth assay, and fluorescence microscopy. Our results demonstrate that yeast electroporation can be instantaneously monitored during pulsing, making it highly suitable for industrial applications. Furthermore, the simplicity of our setup facilitates its integration into continuous liquid flow systems. Additionally, we have established quantitative indicators based on a thorough statistical analysis of the data that can be implemented through a dedicated machine interface, providing efficiency indicators for analysis.
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Affiliation(s)
- Martin Bereta
- Faculty of Health Sciences, Catholic University in Ruzomberok, Ruzomberok, Slovakia
| | - Michal Teplan
- Institute of Measurement Science, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Tomáš Zakar
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, Czechia
| | - Hoang Vuviet
- Institute of Measurement Science, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Michal Cifra
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, Czechia
| | - Djamel Eddine Chafai
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, Japan
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23
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Hoenle PO, Plowman NS, Matos-Maraví P, de Bello F, Bishop TR, Libra M, Idigel C, Rimandai M, Klimes P. Forest disturbance increases functional diversity but decreases phylogenetic diversity of an arboreal tropical ant community. J Anim Ecol 2024; 93:501-516. [PMID: 38409804 DOI: 10.1111/1365-2656.14060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Accepted: 01/19/2024] [Indexed: 02/28/2024]
Abstract
Tropical rainforest trees host a diverse arthropod fauna that can be characterised by their functional diversity (FD) and phylogenetic diversity (PD). Human disturbance degrades tropical forests, often coinciding with species invasion and altered assembly that leads to a decrease in FD and PD. Tree canopies are thought to be particularly vulnerable, but rarely investigated. Here, we studied the effects of forest disturbance on an ecologically important invertebrate group, the ants, in a lowland rainforest in New Guinea. We compared an early successional disturbed plot (secondary forest) to an old-growth plot (primary forest) by exhaustively sampling their ant communities in a total of 852 trees. We expected that for each tree community (1) disturbance would decrease FD and PD in tree-dwelling ants, mediated through species invasion. (2) Disturbance would decrease ant trait variation due to a more homogeneous environment. (3) The main drivers behind these changes would be different contributions of true tree-nesting species and visiting species. We calculated FD and PD based on a species-level phylogeny and 10 ecomorphological traits. Furthermore, we assessed by data exclusion the influence of species, which were not nesting in individual trees (visitors) or only nesting species (nesters), and of non-native species on FD and PD. Primary forests had higher ant species richness and PD than secondary forest. However, we consistently found increased FD in secondary forest. This pattern was robust even if we decoupled functional and phylogenetic signals, or if non-native ant species were excluded from the data. Visitors did not contribute strongly to FD, but they increased PD and their community weighted trait means often varied from nesters. Moreover, all community-weighted trait means changed after forest disturbance. Our finding of contradictory FD and PD patterns highlights the importance of integrative measures of diversity. Our results indicate that the tree community trait diversity is not negatively affected, but possibly even enhanced by disturbance. Therefore, the functional diversity of arboreal ants is relatively robust when compared between old-growth and young trees. However, further study with higher plot-replication is necessary to solidify and generalise our findings.
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Affiliation(s)
- Philipp O Hoenle
- Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Ceske Budejovice, Czech Republic
| | - Nichola S Plowman
- Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Ceske Budejovice, Czech Republic
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Pável Matos-Maraví
- Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Ceske Budejovice, Czech Republic
| | - Francesco de Bello
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Centro de Investigaciones sobre Desertificación (CSIC-UV-GV), Valencia, Spain
| | - Tom R Bishop
- School of Biosciences, Cardiff University, Cardiff, UK
- Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa
| | - Martin Libra
- Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Ceske Budejovice, Czech Republic
| | - Cliffson Idigel
- New Guinea Binatang Research Center, Madang, Papua New Guinea
| | - Maling Rimandai
- New Guinea Binatang Research Center, Madang, Papua New Guinea
| | - Petr Klimes
- Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Ceske Budejovice, Czech Republic
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24
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Sallinger M, Grabmayr H, Humer C, Bonhenry D, Romanin C, Schindl R, Derler I. Activation mechanisms and structural dynamics of STIM proteins. J Physiol 2024; 602:1475-1507. [PMID: 36651592 DOI: 10.1113/jp283828] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 01/11/2023] [Indexed: 01/19/2023] Open
Abstract
The family of stromal interaction molecules (STIM) includes two widely expressed single-pass endoplasmic reticulum (ER) transmembrane proteins and additional splice variants that act as precise ER-luminal Ca2+ sensors. STIM proteins mainly function as one of the two essential components of the so-called Ca2+ release-activated Ca2+ (CRAC) channel. The second CRAC channel component is constituted by pore-forming Orai proteins in the plasma membrane. STIM and Orai physically interact with each other to enable CRAC channel opening, which is a critical prerequisite for various downstream signalling pathways such as gene transcription or proliferation. Their activation commonly requires the emptying of the intracellular ER Ca2+ store. Using their Ca2+ sensing capabilities, STIM proteins confer this Ca2+ content-dependent signal to Orai, thereby linking Ca2+ store depletion to CRAC channel opening. Here we review the conformational dynamics occurring along the entire STIM protein upon store depletion, involving the transition from the quiescent, compactly folded structure into an active, extended state, modulation by a variety of accessory components in the cell as well as the impairment of individual steps of the STIM activation cascade associated with disease.
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Affiliation(s)
- Matthias Sallinger
- Institute of Biophysics, JKU Life Science Center, Johannes Kepler University Linz, Linz, Austria
| | - Herwig Grabmayr
- Institute of Biophysics, JKU Life Science Center, Johannes Kepler University Linz, Linz, Austria
| | - Christina Humer
- Institute of Biophysics, JKU Life Science Center, Johannes Kepler University Linz, Linz, Austria
| | - Daniel Bonhenry
- Center for Nanobiology and Structural Biology, Institute of Microbiology, Academy of Sciences of the Czech Republic, Nove Hrady, Czech Republic
| | - Christoph Romanin
- Institute of Biophysics, JKU Life Science Center, Johannes Kepler University Linz, Linz, Austria
| | - Rainer Schindl
- Gottfried Schatz Research Centre, Medical University of Graz, Graz, Austria
- BioTechMed-Graz, Graz, Austria
| | - Isabella Derler
- Institute of Biophysics, JKU Life Science Center, Johannes Kepler University Linz, Linz, Austria
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25
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Kleisner K, Pokorný Š, Černý V. Sexually dimorphic traits are associated with subsistence strategy in African faces from the Sahel/Savannah belt. Am J Hum Biol 2024; 36:e24008. [PMID: 37897188 DOI: 10.1002/ajhb.24008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 09/30/2023] [Accepted: 10/13/2023] [Indexed: 10/29/2023] Open
Abstract
OBJECTIVES Previous research revealed that in some African populations, food-production strategies are associated with facial shape. Nomadic pastoralists living in the African Sahel/Savannah belt have a different facial morphology than their sedentary neighbors. We investigated whether the lifestyle associated with a subsistence pattern has an impact on sexual dimorphism in the facial structure. METHODS We employed several methods from geometric morphometrics and demonstrated such effect in four ethnically distinct populations that share the same geographic space. RESULTS We show that the facial traits which correlate with a subsistence strategy are systematically associated with levels of facial sex-typicality. In particular, we found that faces with more pronounced pastoralist features have on average more masculine facial traits and that this effect is more pronounced in men than in women. CONCLUSIONS In general, though, the magnitude of overall facial dimorphism does not differ between pastoralists and farmers. Pastoralists (in contrast to farmers) tend to have a more masculine facial morphology but facial differences between the sexes are in both groups the same.
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Affiliation(s)
- Karel Kleisner
- Department of Philosophy and History of Science, Faculty of Science, Charles University, Prague, Czech Republic
| | - Šimon Pokorný
- Department of Philosophy and History of Science, Faculty of Science, Charles University, Prague, Czech Republic
| | - Viktor Černý
- Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Prague, Czech Republic
- Archaeogenetics Laboratory, Institute of Archaeology of the Academy of Sciences of the Czech Republic, Prague, Czech Republic
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26
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Sovilj D, Kelemen CD, Dvorakova S, Zobalova R, Raabova H, Kriska J, Hermanova Z, Knotek T, Anderova M, Klener P, Filimonenko V, Neuzil J, Andera L. Cell-specific modulation of mitochondrial respiration and metabolism by the pro-apoptotic Bcl-2 family members Bax and Bak. Apoptosis 2024; 29:424-438. [PMID: 38001340 DOI: 10.1007/s10495-023-01917-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/29/2023] [Indexed: 11/26/2023]
Abstract
Proteins from the Bcl-2 family play an essential role in the regulation of apoptosis. However, they also possess cell death-unrelated activities that are less well understood. This prompted us to study apoptosis-unrelated activities of the Bax and Bak, pro-apoptotic members of the Bcl-2 family. We prepared Bax/Bak-deficient human cancer cells of different origin and found that while respiration in the glioblastoma U87 Bax/Bak-deficient cells was greatly enhanced, respiration of Bax/Bak-deficient B lymphoma HBL-2 cells was slightly suppressed. Bax/Bak-deficient U87 cells also proliferated faster in culture, formed tumours more rapidly in mice, and showed modulation of metabolism with a considerably increased NAD+/NADH ratio. Follow-up analyses documented increased/decreased expression of mitochondria-encoded subunits of respiratory complexes and stabilization/destabilization of the mitochondrial transcription elongation factor TEFM in Bax/Bak-deficient U87 and HBL-2 cells, respectively. TEFM downregulation using shRNAs attenuated mitochondrial respiration in Bax/Bak-deficient U87 as well as in parental HBL-2 cells. We propose that (post)translational regulation of TEFM levels in Bax/Bak-deficient cells modulates levels of subunits of mitochondrial respiratory complexes that, in turn, contribute to respiration and the accompanying changes in metabolism and proliferation in these cells.
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Affiliation(s)
- Dana Sovilj
- Institute of Biotechnology, Czech Academy of Sciences, Vestec, Prague, Czech Republic
| | - Cristina Daniela Kelemen
- Institute of Biotechnology, Czech Academy of Sciences, Vestec, Prague, Czech Republic
- Faculty of Science, Charles University, Prague, Czech Republic
| | - Sarka Dvorakova
- Institute of Biotechnology, Czech Academy of Sciences, Vestec, Prague, Czech Republic
| | - Renata Zobalova
- Institute of Biotechnology, Czech Academy of Sciences, Vestec, Prague, Czech Republic
| | - Helena Raabova
- Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
| | - Jan Kriska
- Institute of Experimental Medicine, Czech Academy of Sciences, Prague, Czech Republic
| | - Zuzana Hermanova
- Institute of Experimental Medicine, Czech Academy of Sciences, Prague, Czech Republic
| | - Tomas Knotek
- Institute of Experimental Medicine, Czech Academy of Sciences, Prague, Czech Republic
| | - Miroslava Anderova
- Institute of Experimental Medicine, Czech Academy of Sciences, Prague, Czech Republic
| | - Pavel Klener
- First Faculty of Medicine, Institute of Pathological Physiology, Charles University, Prague, Czech Republic
| | - Vlada Filimonenko
- Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
| | - Jiri Neuzil
- Institute of Biotechnology, Czech Academy of Sciences, Vestec, Prague, Czech Republic
- Faculty of Science, Charles University, Prague, Czech Republic
- First Faculty of Medicine, Charles University, Prague, Czech Republic
- School of Pharmacy and Medical Science, Griffith University, Southport, QLD, Australia
| | - Ladislav Andera
- Institute of Biotechnology, Czech Academy of Sciences, Vestec, Prague, Czech Republic.
- Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic.
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27
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Štěpánová S, Andris E, Gutten O, Buděšínský M, Dejmek M, Břehová P, Rulíšek L, Kašička V. Acidity constants and protonation sites of cyclic dinucleotides determined by capillary electrophoresis, quantum chemical calculations, and NMR spectroscopy. Electrophoresis 2024; 45:687-705. [PMID: 38059733 DOI: 10.1002/elps.202300232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 11/11/2023] [Accepted: 11/18/2023] [Indexed: 12/08/2023]
Abstract
Cyclic dinucleotides (CDNs) are important second messengers in bacteria and eukaryotes. Detailed characterization of their physicochemical properties is a prerequisite for understanding their biological functions. Herein, we examine acid-base and electromigration properties of selected CDNs employing capillary electrophoresis (CE), density functional theory (DFT), and nuclear magnetic resonance (NMR) spectroscopy to provide benchmark pKa values, as well as to unambiguously determine the protonation sites. Acidity constants (pKa) of the NH+ moieties of adenine and guanine bases and actual and limiting ionic mobilities of CDNs were determined by nonlinear regression analysis of the pH dependence of their effective electrophoretic mobilities measured by CE in aqueous background electrolytes in a wide pH range (0.98-11.48), at constant temperature (25°C), and constant ionic strength (25 mM). The thermodynamic pKa values were found to be in the range 3.31-4.56 for adenine and 2.28-3.61 for guanine bases, whereas the pKa of enol group of guanine base was in the range 10.21-10.40. Except for systematic shifts of ∼2 pKa, the pKa values calculated by the DFT-D3//COSMO-RS composite protocol that included large-scale conformational sampling and "cross-morphing" were in a relatively good agreement with the pKas determined by CE and predict N1 atom of adenine and N7 atom of guanine as the protonation sites. The protonation of the N1 atom of adenine and N7 atom of guanine in acidic background electrolytes (BGEs) and the dissociation of the enol group of guanine in alkaline BGEs was confirmed also by NMR spectroscopy.
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Affiliation(s)
- Sille Štěpánová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Erik Andris
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Ondrej Gutten
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Miloš Buděšínský
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Milan Dejmek
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Petra Břehová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Lubomír Rulíšek
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Václav Kašička
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
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28
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Caccia M, Marro N, Novák V, Ráez JAL, Castillo P, Janoušková M. Divergent colonization traits, convergent benefits: different species of arbuscular mycorrhizal fungi alleviate Meloidogyne incognita damage in tomato. Mycorrhiza 2024; 34:145-158. [PMID: 38441668 PMCID: PMC10998783 DOI: 10.1007/s00572-024-01139-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 02/21/2024] [Indexed: 04/07/2024]
Abstract
Arbuscular mycorrhizal fungi (AMF) can increase plant tolerance and/or resistance to pests such as the root-knot nematode Meloidogyne incognita. However, the ameliorative effects may depend on AMF species. The aim of this work was therefore to evaluate whether four AMF species differentially affect plant performance in response to M. incognita infection. Tomato plants grown in greenhouse conditions were inoculated with four different AMF isolates (Claroideoglomus claroideum, Funneliformis mosseae, Gigaspora margarita, and Rhizophagus intraradices) and infected with 100 second stage juveniles of M. incognita at two different times: simultaneously or 2 weeks after the inoculation with AMF. After 60 days, the number of galls, egg masses, and reproduction factor of the nematodes were assessed along with plant biomass, phosphorus (P), and nitrogen concentrations in roots and shoots and root colonization by AMF. Only the simultaneous nematode inoculation without AMF caused a large reduction in plant shoot biomass, while all AMF species were able to ameliorate this effect and improve plant P uptake. The AMF isolates responded differently to the interaction with nematodes, either increasing the frequency of vesicles (C. claroideum) or reducing the number of arbuscules (F. mosseae and Gi. margarita). AMF inoculation did not decrease galls; however, it reduced the number of egg masses per gall in nematode simultaneous inoculation, except for C. claroideum. This work shows the importance of biotic stress alleviation associated with an improvement in P uptake and mediated by four different AMF species, irrespective of their fungal root colonization levels and specific interactions with the parasite.
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Affiliation(s)
- Milena Caccia
- Institute of Botany, Czech Academy of Sciences, Zámek 1, Průhonice, 252 43, Czech Republic.
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina.
| | - Nicolás Marro
- Institute of Botany, Czech Academy of Sciences, Zámek 1, Průhonice, 252 43, Czech Republic
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Václav Novák
- Institute of Botany, Czech Academy of Sciences, Zámek 1, Průhonice, 252 43, Czech Republic
| | - Juan Antonio López Ráez
- Department of Soil and Plant Microbiology, Estación Experimental del Zaidín (EEZ-CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain
| | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Campus de Excelencia Internacional Agroalimentario, ceiA3, Av. Menéndez Pidal s/n, 14004, Córdoba, Spain
| | - Martina Janoušková
- Institute of Botany, Czech Academy of Sciences, Zámek 1, Průhonice, 252 43, Czech Republic
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Kulišová M, Rabochová M, Lorinčík J, Brányik T, Hrudka J, Scholtz V, Jarošová Kolouchová I. Exploring Non-Thermal Plasma and UV Radiation as Biofilm Control Strategies against Foodborne Filamentous Fungal Contaminants. Foods 2024; 13:1054. [PMID: 38611358 PMCID: PMC11011738 DOI: 10.3390/foods13071054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 03/27/2024] [Accepted: 03/27/2024] [Indexed: 04/14/2024] Open
Abstract
In recent years, non-thermal plasma (NTP) has emerged as a promising tool for decontamination and disinfection within the food industry. Given the increasing resistance of microbial biofilms to conventional disinfectants and their adverse environmental effects, this method has significant potential for eliminating biofilm formation or mitigating the metabolic activity of grown biofilms. A comparative study was conducted evaluating the efficacy of UV radiation and NTP in eradicating mature biofilms of four common foodborne filamentous fungal contaminants: Alternaria alternata, Aspergillus niger, Fusarium culmorum, and Fusarium graminearum. The findings reveal that while UV radiation exhibits variable efficacy depending on the duration of exposure and fungal species, NTP induces substantial morphological alterations in biofilms, disrupting hyphae, and reducing extracellular polymeric substance production, particularly in A. alternata and F. culmorum. Notably, scanning electron microscopy analysis demonstrates significant disruption of the hyphae in NTP-treated biofilms, indicating its ability to penetrate the biofilm matrix, which is a promising outcome for biofilm eradication strategies. The use of NTP could offer a more environmentally friendly and potentially more effective alternative to traditional disinfection methods.
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Affiliation(s)
- Markéta Kulišová
- Department of Biotechnology, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic;
| | - Michaela Rabochová
- Department of Material Analysis, Research Centre Rez, Hlavní 130, 250 68 Husinec-Řež, Czech Republic; (M.R.); (J.L.)
- Faculty of Biomedical Engineering, Czech Technical University in Prague, nám. Sítná 3105, 272 01 Kladno, Czech Republic
| | - Jan Lorinčík
- Department of Material Analysis, Research Centre Rez, Hlavní 130, 250 68 Husinec-Řež, Czech Republic; (M.R.); (J.L.)
| | - Tomáš Brányik
- Research Institute of Brewing and Malting, Lípová 15, 120 44 Prague, Czech Republic;
| | - Jan Hrudka
- Department of Physics and Measurements, Prague, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic; (J.H.); (V.S.)
| | - Vladimír Scholtz
- Department of Physics and Measurements, Prague, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic; (J.H.); (V.S.)
| | - Irena Jarošová Kolouchová
- Department of Biotechnology, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic;
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Huebbers JW, Caldarescu GA, Kubátová Z, Sabol P, Levecque SCJ, Kuhn H, Kulich I, Reinstädler A, Büttgen K, Manga-Robles A, Mélida H, Pauly M, Panstruga R, Žárský V. Interplay of EXO70 and MLO proteins modulates trichome cell wall composition and susceptibility to powdery mildew. Plant Cell 2024; 36:1007-1035. [PMID: 38124479 PMCID: PMC10980356 DOI: 10.1093/plcell/koad319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 11/08/2023] [Accepted: 12/15/2023] [Indexed: 12/23/2023]
Abstract
Exocyst component of 70-kDa (EXO70) proteins are constituents of the exocyst complex implicated in vesicle tethering during exocytosis. MILDEW RESISTANCE LOCUS O (MLO) proteins are plant-specific calcium channels and some MLO isoforms enable fungal powdery mildew pathogenesis. We here detected an unexpected phenotypic overlap of Arabidopsis thaliana exo70H4 and mlo2 mlo6 mlo12 triple mutant plants regarding the biogenesis of leaf trichome secondary cell walls. Biochemical and Fourier transform infrared spectroscopic analyses corroborated deficiencies in the composition of trichome cell walls in these mutants. Transgenic lines expressing fluorophore-tagged EXO70H4 and MLO exhibited extensive colocalization of these proteins. Furthermore, mCherry-EXO70H4 mislocalized in trichomes of the mlo triple mutant and, vice versa, MLO6-GFP mislocalized in trichomes of the exo70H4 mutant. Expression of GFP-marked PMR4 callose synthase, a known cargo of EXO70H4-dependent exocytosis, revealed reduced cell wall delivery of GFP-PMR4 in trichomes of mlo triple mutant plants. In vivo protein-protein interaction assays in plant and yeast cells uncovered isoform-preferential interactions between EXO70.2 subfamily members and MLO proteins. Finally, exo70H4 and mlo6 mutants, when combined, showed synergistically enhanced resistance to powdery mildew attack. Taken together, our data point to an isoform-specific interplay of EXO70 and MLO proteins in the modulation of trichome cell wall biogenesis and powdery mildew susceptibility.
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Affiliation(s)
- Jan W Huebbers
- Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
| | - George A Caldarescu
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic
| | - Zdeňka Kubátová
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic
| | - Peter Sabol
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic
| | - Sophie C J Levecque
- Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
| | - Hannah Kuhn
- Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
| | - Ivan Kulich
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic
| | - Anja Reinstädler
- Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
| | - Kim Büttgen
- Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
| | - Alba Manga-Robles
- Área de Fisiología Vegetal, Departamento de Ingeniería y Ciencias Agrarias, Universidad de León, 24071 León, Spain
| | - Hugo Mélida
- Área de Fisiología Vegetal, Departamento de Ingeniería y Ciencias Agrarias, Universidad de León, 24071 León, Spain
| | - Markus Pauly
- Institute for Plant Cell Biology and Biotechnology, Heinrich-Heine-University Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf, Germany
| | - Ralph Panstruga
- Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Worringerweg 1, 52056 Aachen, Germany
| | - Viktor Žárský
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic
- Institute of Experimental Botany of the Czech Academy of Sciences, Laboratory of Cell Biology, Rozvojová 263, 165 02 Prague 6 Lysolaje, Czech Republic
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Čáp M, Palková Z. Non-Coding RNAs: Regulators of Stress, Ageing, and Developmental Decisions in Yeast? Cells 2024; 13:599. [PMID: 38607038 PMCID: PMC11012152 DOI: 10.3390/cells13070599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 03/19/2024] [Accepted: 03/27/2024] [Indexed: 04/13/2024] Open
Abstract
Cells must change their properties in order to adapt to a constantly changing environment. Most of the cellular sensing and regulatory mechanisms described so far are based on proteins that serve as sensors, signal transducers, and effectors of signalling pathways, resulting in altered cell physiology. In recent years, however, remarkable examples of the critical role of non-coding RNAs in some of these regulatory pathways have been described in various organisms. In this review, we focus on all classes of non-coding RNAs that play regulatory roles during stress response, starvation, and ageing in different yeast species as well as in structured yeast populations. Such regulation can occur, for example, by modulating the amount and functional state of tRNAs, rRNAs, or snRNAs that are directly involved in the processes of translation and splicing. In addition, long non-coding RNAs and microRNA-like molecules are bona fide regulators of the expression of their target genes. Non-coding RNAs thus represent an additional level of cellular regulation that is gradually being uncovered.
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Affiliation(s)
- Michal Čáp
- Department of Genetics and Microbiology, Faculty of Science, Charles University, BIOCEV, 128 00 Prague, Czech Republic
| | - Zdena Palková
- Department of Genetics and Microbiology, Faculty of Science, Charles University, BIOCEV, 128 00 Prague, Czech Republic
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Nádvorníková J, Pitthard V, Kurka O, Kučera L, Barták P. Egg vs. Oil in the Cookbook of Plasters: Differentiation of Lipid Binders in Wall Paintings Using Gas Chromatography-Mass Spectrometry and Principal Component Analysis. Molecules 2024; 29:1520. [PMID: 38611799 PMCID: PMC11013410 DOI: 10.3390/molecules29071520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 03/19/2024] [Accepted: 03/27/2024] [Indexed: 04/14/2024] Open
Abstract
Wall paintings are integral to cultural heritage and offer rich insights into historical and religious beliefs. There exist various wall painting techniques that pose challenges in binder and pigment identification, especially in the case of egg/oil-based binders. GC-MS identification of lipidic binders relies routinely on parameters like the ratios of fatty acids within the plaster. However, the reliability of these ratios for binder identification is severely limited, as demonstrated in this manuscript. Therefore, a more reliable tool for effective differentiation between egg and oil binders based on a combination of diagnostic values, specific markers (cholesterol oxidation products), and PCA is presented in this study. Reference samples of wall paintings with egg and linseed oil binders with six different pigments were subjected to modern artificial ageing methods and subsequently analysed using two GC-MS instruments. A statistically significant difference (at a 95% confidence level) between the egg and oil binders and between the results from two GC-MS instruments was observed. These discrepancies between the results from the two GC-MS instruments are likely attributed to the heterogeneity of the samples with egg and oil binders. This study highlights the complexities in identifying wall painting binders and the need for innovative and revised analytical methods in conservation efforts.
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Affiliation(s)
- Jana Nádvorníková
- Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 779 00 Olomouc, Czech Republic; (O.K.); (L.K.); (P.B.)
| | - Václav Pitthard
- Conservation Science Department, Kunsthistorisches Museum, Burgring 5, 1010 Vienna, Austria;
| | - Ondřej Kurka
- Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 779 00 Olomouc, Czech Republic; (O.K.); (L.K.); (P.B.)
| | - Lukáš Kučera
- Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 779 00 Olomouc, Czech Republic; (O.K.); (L.K.); (P.B.)
| | - Petr Barták
- Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 779 00 Olomouc, Czech Republic; (O.K.); (L.K.); (P.B.)
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Romanyuk O, Stehlík Š, Zemek J, Aubrechtová Dragounová K, Kromka A. Utilizing Constant Energy Difference between sp-Peak and C 1s Core Level in Photoelectron Spectra for Unambiguous Identification and Quantification of Diamond Phase in Nanodiamonds. Nanomaterials (Basel) 2024; 14:590. [PMID: 38607124 PMCID: PMC11013481 DOI: 10.3390/nano14070590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 03/19/2024] [Accepted: 03/24/2024] [Indexed: 04/13/2024]
Abstract
The modification of nanodiamond (ND) surfaces has significant applications in sensing devices, drug delivery, bioimaging, and tissue engineering. Precise control of the diamond phase composition and bond configurations during ND processing and surface finalization is crucial. In this study, we conducted a comparative analysis of the graphitization process in various types of hydrogenated NDs, considering differences in ND size and quality. We prepared three types of hydrogenated NDs: high-pressure high-temperature NDs (HPHT ND-H; 0-30 nm), conventional detonation nanodiamonds (DND-H; ~5 nm), and size- and nitrogen-reduced hydrogenated nanodiamonds (snr-DND-H; 2-3 nm). The samples underwent annealing in an ultra-high vacuum and sputtering by Ar cluster ion beam (ArCIB). Samples were investigated by in situ X-ray photoelectron spectroscopy (XPS), in situ ultraviolet photoelectron spectroscopy (UPS), and Raman spectroscopy (RS). Our investigation revealed that the graphitization temperature of NDs ranges from 600 °C to 700 °C and depends on the size and crystallinity of the NDs. Smaller DND particles with a high density of defects exhibit a lower graphitization temperature. We revealed a constant energy difference of 271.3 eV between the sp-peak in the valence band spectra (at around 13.7 eV) and the sp3 component in the C 1s core level spectra (at 285.0 eV). The identification of this energy difference helps in calibrating charge shifts and serves the unambiguous identification of the sp3 bond contribution in the C 1s spectra obtained from ND samples. Results were validated through reference measurements on hydrogenated single crystal C(111)-H and highly-ordered pyrolytic graphite (HOPG).
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Affiliation(s)
- Oleksandr Romanyuk
- Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic; (Š.S.); (J.Z.); (K.A.D.); (A.K.)
| | - Štěpán Stehlík
- Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic; (Š.S.); (J.Z.); (K.A.D.); (A.K.)
- New Technologies—Research Centre, University of West Bohemia, Univerzitní 8, 306 14 Pilsen, Czech Republic
| | - Josef Zemek
- Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic; (Š.S.); (J.Z.); (K.A.D.); (A.K.)
| | - Kateřina Aubrechtová Dragounová
- Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic; (Š.S.); (J.Z.); (K.A.D.); (A.K.)
- Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Břehová 7, 115 19 Prague, Czech Republic
| | - Alexander Kromka
- Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic; (Š.S.); (J.Z.); (K.A.D.); (A.K.)
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Keresteš V, Kubeš J, Applová L, Kollárová P, Lenčová-Popelová O, Melnikova I, Karabanovich G, Khazeem MM, Bavlovič-Piskáčková H, Štěrbová-Kovaříková P, Austin CA, Roh J, Štěrba M, Šimůnek T, Jirkovská A. Exploring the effects of topoisomerase II inhibitor XK469 on anthracycline cardiotoxicity and DNA damage. Toxicol Sci 2024; 198:288-302. [PMID: 38290791 PMCID: PMC10964739 DOI: 10.1093/toxsci/kfae008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024] Open
Abstract
Anthracyclines, such as doxorubicin (adriamycin), daunorubicin, or epirubicin, rank among the most effective agents in classical anticancer chemotherapy. However, cardiotoxicity remains the main limitation of their clinical use. Topoisomerase IIβ has recently been identified as a plausible target of anthracyclines in cardiomyocytes. We examined the putative topoisomerase IIβ selective agent XK469 as a potential cardioprotective and designed several new analogs. In our experiments, XK469 inhibited both topoisomerase isoforms (α and β) and did not induce topoisomerase II covalent complexes in isolated cardiomyocytes and HL-60, but induced proteasomal degradation of topoisomerase II in these cell types. The cardioprotective potential of XK469 was studied on rat neonatal cardiomyocytes, where dexrazoxane (ICRF-187), the only clinically approved cardioprotective, was effective. Initially, XK469 prevented daunorubicin-induced toxicity and p53 phosphorylation in cardiomyocytes. However, it only partially prevented the phosphorylation of H2AX and did not affect DNA damage measured by Comet Assay. It also did not compromise the daunorubicin antiproliferative effect in HL-60 leukemic cells. When administered to rabbits to evaluate its cardioprotective potential in vivo, XK469 failed to prevent the daunorubicin-induced cardiac toxicity in either acute or chronic settings. In the following in vitro analysis, we found that prolonged and continuous exposure of rat neonatal cardiomyocytes to XK469 led to significant toxicity. In conclusion, this study provides important evidence on the effects of XK469 and its combination with daunorubicin in clinically relevant doses in cardiomyocytes. Despite its promising characteristics, long-term treatments and in vivo experiments have not confirmed its cardioprotective potential.
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Affiliation(s)
- Veronika Keresteš
- Department of Biochemical Sciences, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Jan Kubeš
- Department of Biochemical Sciences, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Lenka Applová
- Department of Biochemical Sciences, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Petra Kollárová
- Department of Pharmacology, Faculty of Medicine in Hradec Kralove, Charles University, Hradec Kralove 500 03, Czech Republic
| | - Olga Lenčová-Popelová
- Department of Pharmacology, Faculty of Medicine in Hradec Kralove, Charles University, Hradec Kralove 500 03, Czech Republic
| | - Iuliia Melnikova
- Department of Organic and Bioorganic chemistry, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Galina Karabanovich
- Department of Organic and Bioorganic chemistry, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Mushtaq M Khazeem
- National Center of Hematology, Mustansiriyah University, Baghdad, Baghdad Governorate 79R2+RXM, Iraq
| | - Hana Bavlovič-Piskáčková
- Department of Pharmaceutical Chemistry and Pharmaceutical Analysis, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Petra Štěrbová-Kovaříková
- Department of Pharmaceutical Chemistry and Pharmaceutical Analysis, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Caroline A Austin
- Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK
| | - Jaroslav Roh
- Department of Organic and Bioorganic chemistry, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Martin Štěrba
- Department of Pharmacology, Faculty of Medicine in Hradec Kralove, Charles University, Hradec Kralove 500 03, Czech Republic
| | - Tomáš Šimůnek
- Department of Biochemical Sciences, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
| | - Anna Jirkovská
- Department of Biochemical Sciences, Faculty of Pharmacy in Hradec Kralove, Charles University, Hradec Kralove 500 05, Czech Republic
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Wang Y, Denisov N, Qin S, Gonçalves DS, Kim H, Sarma BB, Schmuki P. Stable and Highly Active Single Atom Configurations for Photocatalytic H 2 Generation. Adv Mater 2024:e2400626. [PMID: 38520245 DOI: 10.1002/adma.202400626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 03/05/2024] [Indexed: 03/25/2024]
Abstract
The employment of single atoms (SAs), especially Pt SAs, as co-catalysts in photocatalytic H2 generation has gained significant attention due to their exceptional efficiency. However, a major challenge in their application is the light-induced agglomeration of these SAs into less active nanosized particles under photocatalytic conditions. This study addresses the stability and reactivity of Pt SAs on TiO2 surfaces by investigating various post-deposition annealing treatments in air, Ar, and Ar-H2 environments at different temperatures. It is described that annealing in an Ar-H2 atmosphere optimally stabilizes SA configurations, forming stable 2D rafts of assembled SAs ≈0.5-1 nm in diameter. These rafts not only resist light-induced agglomeration but also exhibit significantly enhanced H2 production efficiency. The findings reveal a promising approach to maintaining the high reactivity of Pt SAs while overcoming the critical challenge of their stability under photocatalytic conditions.
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Affiliation(s)
- Yue Wang
- Department of Materials Science and Engineering, Chair for Surface Science and Corrosion (WW4-LKO), Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstraße 7, 91058, Erlangen, Germany
| | - Nikita Denisov
- Department of Materials Science and Engineering, Chair for Surface Science and Corrosion (WW4-LKO), Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstraße 7, 91058, Erlangen, Germany
| | - Shanshan Qin
- Department of Materials Science and Engineering, Chair for Surface Science and Corrosion (WW4-LKO), Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstraße 7, 91058, Erlangen, Germany
| | - Danielle Santos Gonçalves
- Institute of Catalysis Research and Technology, Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Hyesung Kim
- Department of Materials Science and Engineering, Chair for Surface Science and Corrosion (WW4-LKO), Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstraße 7, 91058, Erlangen, Germany
| | - Bidyut Bikash Sarma
- Institute of Catalysis Research and Technology and Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, 76131, Karlsruhe, Germany
| | - Patrik Schmuki
- Department of Materials Science and Engineering, Chair for Surface Science and Corrosion (WW4-LKO), Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstraße 7, 91058, Erlangen, Germany
- Regional Centre of Advanced Technologies and Materials, Šlechtitelů 27, Olomouc, 78371, Czech Republic
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Hampl M, Jandova N, Luskova D, Novakova M, Szotkowska T, Cada S, Prochazka J, Kohoutek J, Buchtova M. Early embryogenesis in CHDFIDD mouse model reveals facial clefts and altered cranial neurogenesis. Dis Model Mech 2024:dmm.050261. [PMID: 38511331 DOI: 10.1242/dmm.050261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 03/12/2024] [Indexed: 03/22/2024] Open
Abstract
Congenital heart defects, facial dysmorphism and intellectual development disorder (CHDFIDD) is associated with mutations in CDK13 gene, which encodes a transcription regulating Cyclin-dependent kinase 13 (CDK13). Here, we focused on development of craniofacial structures and analyzed early embryonic stages of CHDFIDD mouse models with hypomorphic mutation in Cdk13 gene, which exhibits cleft lip/palate and knockout of Cdk13 with stronger phenotype including midfacial cleft. Cdk13 was found to be physiologically strongly expressed in the mouse embryonic craniofacial structures, namely in the forebrain, nasal epithelium and maxillary mesenchyme. We also uncovered that Cdk13-deficiency leads to development of hypoplastic branches of the trigeminal nerve including maxillary branch and additionally, we detected significant gene expression changes of molecules involved in neurogenesis (Ache, Dcx, Mef2c, Neurog1, Ntn1, Pou4f1) within the developing palatal shelves. These results, together with changes of gene expression of other key face-specific molecules (Fgf8, Foxd1, Msx1, Meis2 and Shh) at early stages in Cdk13 mutant embryos, demonstrate a key role of CDK13 in regulation of craniofacial morphogenesis.
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Affiliation(s)
- Marek Hampl
- Laboratory of Molecular Morphogenesis, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic
- Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic
| | - Nela Jandova
- Laboratory of Molecular Morphogenesis, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic
- Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic
| | - Denisa Luskova
- Laboratory of Molecular Morphogenesis, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic
| | - Monika Novakova
- Department of Chemistry and Toxicology, Veterinary Research Institute, Brno, Czech Republic
| | - Tereza Szotkowska
- Laboratory of Molecular Morphogenesis, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic
| | - Stepan Cada
- Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic
| | - Jan Prochazka
- Laboratory of Transgenic Models of Diseases, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
- Czech Centre for Phenogenomics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
| | - Jiri Kohoutek
- Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic
| | - Marcela Buchtova
- Laboratory of Molecular Morphogenesis, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Brno, Czech Republic
- Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic
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Zakreski E, Androvičová R, Bártová K, Chronos A, Krejčová L, Martinec Nováková L, Klapilová K. Childhood Adversity and Offense-Supportive Cognitions Among Czech Adults with a Sexual Interest in Violence or Children. Arch Sex Behav 2024:10.1007/s10508-024-02837-1. [PMID: 38514492 DOI: 10.1007/s10508-024-02837-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 02/15/2024] [Accepted: 02/16/2024] [Indexed: 03/23/2024]
Abstract
Individuals with paraphilic interests in sexual violence or children may be more likely to sexually offend if they possess offense-supportive cognitions. These cognitions may develop in response to childhood adversity. However, this idea is largely based on research in men convicted of sexual offenses and may not generalize to non-incarcerated adults with paraphilic interests. In a sample of 178 adults screened for paraphilic interests in violence or children (from the general Czech population), we hypothesized that childhood sexual abuse and emotional neglect would be associated with offense-supportive cognitions about rape and child molestation. Participants came from a nationally representative sample of Czech adults and were selected if they self-reported high levels of sexual interest in violence and/or children. Participants completed an online survey with self-report measures of sexual orientation, offense-supportive cognitions (Bumby RAPE and MOLEST scales), and childhood sexual abuse and emotional neglect (Childhood Trauma Questionnaire). Controlling for gender, age, and sexual orientation, we found that both rape-supportive cognitions and child molestation-supportive cognitions were significantly associated with higher levels of childhood sexual abuse, but not emotional neglect. These findings indicate that childhood sexual abuse may lead to offense-supportive cognitions among men and women with paraphilia.
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Affiliation(s)
- Ellen Zakreski
- Centrum Pro Sexuální Zdraví a Intervence, National Institute of Mental Health, Topolová 748, 250 67, Klecany, Czech Republic.
- Faculty of Humanities, Charles University, Prague, Czech Republic.
| | - Renáta Androvičová
- Centrum Pro Sexuální Zdraví a Intervence, National Institute of Mental Health, Topolová 748, 250 67, Klecany, Czech Republic
| | - Klára Bártová
- Centrum Pro Sexuální Zdraví a Intervence, National Institute of Mental Health, Topolová 748, 250 67, Klecany, Czech Republic
- Faculty of Humanities, Charles University, Prague, Czech Republic
| | - Agatha Chronos
- Faculty of Psychology, Universitetet i Bergen, Bergen, Norway
| | - Lucie Krejčová
- Centrum Pro Sexuální Zdraví a Intervence, National Institute of Mental Health, Topolová 748, 250 67, Klecany, Czech Republic
- Faculty of Humanities, Charles University, Prague, Czech Republic
| | - Lenka Martinec Nováková
- Centrum Pro Sexuální Zdraví a Intervence, National Institute of Mental Health, Topolová 748, 250 67, Klecany, Czech Republic
- Faculty of Humanities, Charles University, Prague, Czech Republic
| | - Kateřina Klapilová
- Centrum Pro Sexuální Zdraví a Intervence, National Institute of Mental Health, Topolová 748, 250 67, Klecany, Czech Republic
- Faculty of Humanities, Charles University, Prague, Czech Republic
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Pavlovič A, Ševčíková L, Hřivňacký M, Rác M. Effect of the General Anaesthetic Ketamine on Electrical and Ca 2+ Signal Propagation in Arabidopsis thaliana. Plants (Basel) 2024; 13:894. [PMID: 38592882 PMCID: PMC10975207 DOI: 10.3390/plants13060894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 03/12/2024] [Accepted: 03/15/2024] [Indexed: 04/11/2024]
Abstract
The systemic electrical signal propagation in plants (i.e., from leaf to leaf) is dependent on GLUTAMATE RECEPTOR-LIKE proteins (GLRs). The GLR receptors are the homologous proteins to the animal ionotropic glutamate receptors (iGluRs) which are ligand-gated non-selective cation channels that mediate neurotransmission in the animal's nervous system. In this study, we investigated the effect of the general anaesthetic ketamine, a well-known non-competitive channel blocker of human iGluRs, on systemic electrical signal propagation in Arabidopsis thaliana. We monitored the electrical signal propagation, intracellular calcium level [Ca2+]cyt and expression of jasmonate (JA)-responsive genes in response to heat wounding. Although ketamine affected the shape and the parameters of the electrical signals (amplitude and half-time, t1/2) mainly in systemic leaves, it was not able to block a systemic response. Increased [Ca2+]cyt and the expression of jasmonate-responsive genes were detected in local as well as in systemic leaves in response to heat wounding in ketamine-treated plants. This is in contrast with the effect of the volatile general anaesthetic diethyl ether which completely blocked the systemic response. This low potency of ketamine in plants is probably caused by the fact that the critical amino acid residues needed for ketamine binding in human iGluRs are not conserved in plants' GLRs.
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Affiliation(s)
- Andrej Pavlovič
- Department of Biophysics, Faculty of Science, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic; (L.Š.); (M.H.); (M.R.)
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Skrbek L, Schmoranzer D, Sreenivasan KR. Phenomenology of transition to quantum turbulence in flows of superfluid helium. Proc Natl Acad Sci U S A 2024; 121:e2302256121. [PMID: 38457491 PMCID: PMC10963016 DOI: 10.1073/pnas.2302256121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 01/17/2024] [Indexed: 03/10/2024] Open
Abstract
Transition from laminar to turbulent states of classical viscous fluids is complex and incompletely understood. Transition to quantum turbulence (QT), by which we mean the turbulent motion of quantum fluids such as helium II, whose physical properties depend on quantum physics in some crucial respects, is naturally more complex. This increased complexity arises from superfluidity, quantization of circulation, and, at finite temperatures below the critical, the two-fluid behavior. Transition to QT could involve, as an initial step, the transition of the classical component, or the intrinsic or extrinsic nucleation of quantized vortices in the superfluid component, or a simultaneous occurrence of both scenarios-and the subsequent interconnected evolution. In spite of the multiplicity of scenarios, aspects of transition to QT can be understood at a phenomenological level on the basis of some general principles, and compared meaningfully with transition in classical flows.
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Affiliation(s)
- Ladislav Skrbek
- Faculty of Mathematics and Physics, Charles University, Prague121 16, Czech Republic
| | - David Schmoranzer
- Faculty of Mathematics and Physics, Charles University, Prague121 16, Czech Republic
| | - Katepalli R. Sreenivasan
- Department of Physics, Courant Institute of Mathematical Sciences, Tandon School of Engineering, New York University, New York, NY11201
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40
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Bozděchová L, Rudolfová A, Hanáková K, Fojtová M, Fajkus J. Optimizing ChIRP-MS for Comprehensive Profiling of RNA-Protein Interactions in Arabidopsis thaliana: A Telomerase RNA Case Study. Plants (Basel) 2024; 13:850. [PMID: 38592918 PMCID: PMC10975786 DOI: 10.3390/plants13060850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 03/05/2024] [Accepted: 03/13/2024] [Indexed: 04/11/2024]
Abstract
The current repertoire of methods available for studying RNA-protein interactions in plants is somewhat limited. Employing an RNA-centric approach, particularly with less abundant RNAs, presents various challenges. Many of the existing methods were initially designed for different model systems, with their application in plants receiving limited attention thus far. The Comprehensive Identification of RNA-Binding Proteins by Mass Spectrometry (ChIRP-MS) technique, initially developed for mammalian cells, has been adapted in this study for application in Arabidopsis thaliana. The procedures have been meticulously modified and optimized for telomerase RNA, a notable example of a low-abundance RNA recently identified. Following these optimization steps, ChIRP-MS can serve as an effective screening method for identifying candidate proteins interacting with any target RNA of interest.
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Affiliation(s)
- Lucie Bozděchová
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic; (L.B.); (K.H.); (M.F.)
| | - Anna Rudolfová
- National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic;
- Institute of Biophysics, Czech Academy of Sciences, Královopolská 135, 61200 Brno, Czech Republic
| | - Kateřina Hanáková
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic; (L.B.); (K.H.); (M.F.)
| | - Miloslava Fojtová
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic; (L.B.); (K.H.); (M.F.)
- National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic;
| | - Jiří Fajkus
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic; (L.B.); (K.H.); (M.F.)
- National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic;
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41
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Frigau L, Conversano C, Antoch J. PARSEG: a computationally efficient approach for statistical validation of botanical seeds' images. Sci Rep 2024; 14:6052. [PMID: 38480768 PMCID: PMC10937986 DOI: 10.1038/s41598-024-56228-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 03/04/2024] [Indexed: 03/17/2024] Open
Abstract
Human recognition and automated image validation are the most widely used approaches to validate the output of binary segmentation methods but, as the number of pixels in an image easily exceeds several million, they become highly demanding from both practical and computational standpoint. We propose a method, called PARSEG, which stands for PArtitioning, Random Selection, Estimation, and Generalization; being the basic steps within this procedure. Suggested method enables us to perform statistical validation of binary images by selecting the minimum number of pixels from the original image to be used for validation without deteriorating the effectiveness of the validation procedure. It utilizes binary classifiers to accomplish image validation and selects the optimal sample of pixels according to a specific objective function. As a result, the computational complexity of the validation experiment is substantially reduced. The procedure's effectiveness is illustrated by considering images composed of approximately 13 million pixels from the field of seed recognition. PARSEG provides roughly the same precision of the validation process when extended to the entire image, but it utilizes only about 4% of the original number of pixels, thus reducing, by about 90%, the computing time required to validate a binary segmented image.
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Affiliation(s)
- Luca Frigau
- Department of Economics and Business Sciences, University of Cagliari, Viale S. Ignazio da Laconi 17, 09123, Cagliari, Italy.
| | - Claudio Conversano
- Department of Economics and Business Sciences, University of Cagliari, Viale S. Ignazio da Laconi 17, 09123, Cagliari, Italy
| | - Jaromír Antoch
- Faculty of Mathematics and Physics, Charles University, Sokolovská 83, 186 75, Prague, Czech Republic
- Faculty of Informatics and Statistics, Department of Econometrics, Prague University of Economics and Business, Winston Churchill Square 1938/4, 130 67, Prague 3, Czech Republic
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42
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Sarmah A, Hobza P, Chandra AK, Mitra S, Nakajima T. Many-body Effects on Electronic Transport in Molecular Junctions: A Quantum Perspective. Chemphyschem 2024:e202300938. [PMID: 38469938 DOI: 10.1002/cphc.202300938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 03/09/2024] [Accepted: 03/12/2024] [Indexed: 03/13/2024]
Abstract
This concept delves into quantum particle transport at the nanoscale, with a particular focus on how electrons move through molecular circuits. The thriving field of single molecular electronics benefits from the unique electrical and other properties of nanostructures. It concentrates on single molecular junctions that serve as bridges between electrodes. In this context, the electronic correlation-induced many-body effect gives rise to resonant states. These states, along with conductance, depend on electron spin. Thus, the field acts as a bridge between quantum and macroscopic worlds, unveiling unique behaviors of electrons. Additionally, external factors, such as magnetic fields and voltages, offer means to control the electron correlation in these junctions.
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Affiliation(s)
- Amrit Sarmah
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610, Prague 6, Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610, Prague 6, Czech Republic
| | - Asit K Chandra
- Department of Chemistry, North-Eastern Hill University, Shillong, 793022, India
| | - Sivaprasad Mitra
- Department of Chemistry, North-Eastern Hill University, Shillong, 793022, India
| | - Takahito Nakajima
- RIKEN Center for Computational Science, 7-1-26, Minatojima-minamimi-machi, Chuo-ku, Kobe, Hyogo, 650-0047, Japan
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Pavkova I, Bavlovic J, Kubelkova K, Stulik J, Klimentova J. Protective potential of outer membrane vesicles derived from a virulent strain of Francisella tularensis. Front Microbiol 2024; 15:1355872. [PMID: 38533334 PMCID: PMC10963506 DOI: 10.3389/fmicb.2024.1355872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 02/12/2024] [Indexed: 03/28/2024] Open
Abstract
Francisella tularensis secretes tubular outer membrane vesicles (OMVs) that contain a number of immunoreactive proteins as well as virulence factors. We have reported previously that isolated Francisella OMVs enter macrophages, cumulate inside, and induce a strong pro-inflammatory response. In the current article, we present that OMVs treatment of macrophages also enhances phagocytosis of the bacteria and suppresses their intracellular replication. On the other hand, the subsequent infection with Francisella is able to revert to some extent the strong pro-inflammatory effect induced by OMVs in macrophages. Being derived from the bacterial surface, isolated OMVs may be considered a "non-viable mixture of Francisella antigens" and as such, they present a promising protective material. Immunization of mice with OMVs isolated from a virulent F. tularensis subsp. holarctica strain FSC200 prolonged the survival time but did not fully protect against the infection with a lethal dose of the parent strain. However, the sera of the immunized animals revealed unambiguous cytokine and antibody responses and proved to recognize a set of well-known Francisella immunoreactive proteins. For these reasons, Francisella OMVs present an interesting material for future protective studies.
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Affiliation(s)
| | | | | | | | - Jana Klimentova
- Department of Molecular Pathology and Biology, Military Faculty of Medicine, University of Defence, Hradec Kralove, Czechia
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Dudysová D, Janků K, Piorecký M, Hantáková V, Orendáčová M, Piorecká V, Štrobl J, Kliková M, Ngo HVV, Kopřivová J. Closed-loop auditory stimulation of slow-wave sleep in chronic insomnia: a pilot study. J Sleep Res 2024:e14179. [PMID: 38467353 DOI: 10.1111/jsr.14179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 12/12/2023] [Accepted: 02/07/2024] [Indexed: 03/13/2024]
Abstract
Insomnia is a prevalent and disabling condition whose treatment is not always effective. This pilot study explores the feasibility and effects of closed-loop auditory stimulation (CLAS) as a potential non-invasive intervention to improve sleep, its subjective quality, and memory consolidation in patients with insomnia. A total of 27 patients with chronic insomnia underwent a crossover, sham-controlled study with 2 nights of either CLAS or sham stimulation. Polysomnography was used to record sleep parameters, while questionnaires and a word-pair memory task were administered to assess subjective sleep quality and memory consolidation. The initial analyses included 17 patients who completed the study, met the inclusion criteria, and received CLAS. From those, 10 (58%) received only a small number of stimuli. In the remaining seven (41%) patients with sufficient CLAS, we evaluated the acute and whole-night effect on sleep. CLAS led to a significant immediate increase in slow oscillation (0.5-1 Hz) amplitude and activity, and reduced delta (1-4 Hz) and sigma/sleep spindle (12-15 Hz) activity during slow-wave sleep across the whole night. All these fundamental sleep rhythms are implicated in sleep-dependent memory consolidation. Yet, CLAS did not change sleep-dependent memory consolidation or sleep macrostructure characteristics, number of arousals, or subjective perception of sleep quality. Results showed CLAS to be feasible in patients with insomnia. However, a high variance in the efficacy of our automated stimulation approach suggests that further research is needed to optimise stimulation protocols to better unlock potential CLAS benefits for sleep structure and subjective sleep quality in such clinical settings.
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Affiliation(s)
- Daniela Dudysová
- National Institute of Mental Health, Klecany, Czech Republic
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
| | - Karolina Janků
- National Institute of Mental Health, Klecany, Czech Republic
| | - Marek Piorecký
- National Institute of Mental Health, Klecany, Czech Republic
- Faculty of Biomedical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Veronika Hantáková
- National Institute of Mental Health, Klecany, Czech Republic
- School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, Scotland
| | - Mária Orendáčová
- National Institute of Mental Health, Klecany, Czech Republic
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
- Department of Physiology, Faculty of Science, Charles University in Prague, Prague, Czech Republic
| | - Václava Piorecká
- National Institute of Mental Health, Klecany, Czech Republic
- Faculty of Biomedical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Jan Štrobl
- National Institute of Mental Health, Klecany, Czech Republic
- Faculty of Biomedical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Monika Kliková
- National Institute of Mental Health, Klecany, Czech Republic
| | - Hong-Viet V Ngo
- Center for Brain, Behaviour and Metabolism, University of Lübeck, Lübeck, Germany
- Department of Psychology, University of Lübeck, Lübeck, Germany
- Department of Psychology, University of Essex, Colchester, UK
| | - Jana Kopřivová
- National Institute of Mental Health, Klecany, Czech Republic
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
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Katagiri A, Kishimoto S, Okamoto Y, Yamada M, Niwa H, Bereiter DA, Kato T. Effect of chronic intermittent hypoxia on ocular and intraoral mechanical allodynia mediated via the calcitonin gene-related peptide in a rat. Sleep 2024; 47:zsad332. [PMID: 38166171 PMCID: PMC10925949 DOI: 10.1093/sleep/zsad332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 12/15/2023] [Indexed: 01/04/2024] Open
Abstract
STUDY OBJECTIVES Obstructive sleep apnea, a significant hypoxic condition, may exacerbate several orofacial pain conditions. The study aims to define the involvement of calcitonin gene-related peptide (CGRP) in peripheral and central sensitization and in evoking orofacial mechanical allodynia under chronic intermittent hypoxia (CIH). METHODS Male rats were exposed to CIH. Orofacial mechanical allodynia was assessed using the eyeblink test and the two-bottle preference drinking test. The CGRP-immunoreactive neurons in the trigeminal ganglion (TG), CGRP-positive primary afferents projecting to laminae I-II of the trigeminal spinal subnucleus caudalis (Vc), and neural responses in the second-order neurons of the Vc were determined by immunohistochemistry. CGRP receptor antagonist was administrated in the TG. RESULTS CIH-induced ocular and intraoral mechanical allodynia. CGRP-immunoreactive neurons and activated satellite glial cells (SGCs) were significantly increased in the TG and the number of cFos-immunoreactive cells in laminae I-II of the Vc were significantly higher in CIH rats compared to normoxic rats. Local administration of the CGRP receptor antagonist in the TG of CIH rats attenuated orofacial mechanical allodynia; the number of CGRP-immunoreactive neurons and activated SGCs in the TG, and the density of CGRP-positive primary afferent terminals and the number of cFos-immunoreactive cells in laminae I-II of the Vc were significantly lower compared to vehicle-administrated CIH rats. CONCLUSIONS An increase in CGRP in the TG induced by CIH, as well as orofacial mechanical allodynia and central sensitization of second-order neurons in the Vc, supported the notion that CGRP plays a critical role in CIH-induced orofacial mechanical allodynia.
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Affiliation(s)
- Ayano Katagiri
- Department of Oral Physiology, Osaka University Graduate School of Dentistry, Osaka, Japan
| | - Saki Kishimoto
- Department of Oral Physiology, Osaka University Graduate School of Dentistry, Osaka, Japan
- Department of Dental Anesthesiology, Osaka University Graduate School of Dentistry, Osaka, Japan
| | - Yoshie Okamoto
- Department of Oral Physiology, Osaka University Graduate School of Dentistry, Osaka, Japan
| | - Masaharu Yamada
- Department of Oral Physiology, Osaka University Graduate School of Dentistry, Osaka, Japan
- Department of Dental Anesthesiology, Osaka University Graduate School of Dentistry, Osaka, Japan
| | - Hitoshi Niwa
- Department of Dental Anesthesiology, Osaka University Graduate School of Dentistry, Osaka, Japan
| | - David A Bereiter
- Department of Diagnostic and Biological Sciences, University of Minnesota School of Dentistry, MN, USA
| | - Takafumi Kato
- Department of Oral Physiology, Osaka University Graduate School of Dentistry, Osaka, Japan
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Andersson PA, Vartanova I, Västfjäll D, Tinghög G, Strimling P, Wu J, Hazin I, Akotia CS, Aldashev A, Andrighetto G, Anum A, Arikan G, Bagherian F, Barrera D, Basnight-Brown D, Batkeyev B, Berezina E, Björnstjerna M, Boski P, Bovina I, Huyen BTT, Čekrlija Đ, Choi HS, Contreras-Ibáñez CC, Costa-Lopes R, de Barra M, de Zoysa P, Dorrough AR, Dvoryanchikov N, Engelmann JB, Euh H, Fang X, Fiedler S, Foster-Gimbel OA, Fülöp M, Gardarsdottir RB, Gill CMHD, Glöckner A, Graf S, Grigoryan A, Gritskov V, Growiec K, Halama P, Hartanto A, Hopthrow T, Hřebíčková M, Iliško D, Imada H, Kapoor H, Kawakami K, Khachatryan N, Kharchenko N, Kiyonari T, Kohút M, Leslie LM, Li Y, Li NP, Li Z, Liik K, Maitner AT, Manhique B, Manley H, Medhioub I, Mentser S, Nejat P, Nipassa O, Nussinson R, Onyedire NG, Onyishi IE, Panagiotopoulou P, Perez-Floriano LR, Persson M, Pirttilä-Backman AM, Pogosyan M, Raver J, Rodrigues RB, Romanò S, Romero PP, Sakki I, San Martin A, Sherbaji S, Shimizu H, Simpson B, Szabo E, Takemura K, Teixeira MLM, Thanomkul N, Tiliouine H, Travaglino GA, Tsirbas Y, Widodo S, Zein R, Zirganou-Kazolea L, Eriksson K. Anger and disgust shape judgments of social sanctions across cultures, especially in high individual autonomy societies. Sci Rep 2024; 14:5591. [PMID: 38454068 PMCID: PMC10920647 DOI: 10.1038/s41598-024-55815-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 02/28/2024] [Indexed: 03/09/2024] Open
Abstract
When someone violates a social norm, others may think that some sanction would be appropriate. We examine how the experience of emotions like anger and disgust relate to the judged appropriateness of sanctions, in a pre-registered analysis of data from a large-scale study in 56 societies. Across the world, we find that individuals who experience anger and disgust over a norm violation are more likely to endorse confrontation, ostracism and, to a smaller extent, gossip. Moreover, we find that the experience of anger is consistently the strongest predictor of judgments of confrontation, compared to other emotions. Although the link between state-based emotions and judgments may seem universal, its strength varies across countries. Aligned with theoretical predictions, this link is stronger in societies, and among individuals, that place higher value on individual autonomy. Thus, autonomy values may increase the role that emotions play in guiding judgments of social sanctions.
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Affiliation(s)
- Per A Andersson
- Department of Behavioral Sciences and Learning, Linköping University, 581 83, Linköping, Sweden.
- JEDILab, Division of Economics, Department of Management and Engineering, Linköping University, Linköping, Sweden.
| | - Irina Vartanova
- Institute for Futures Studies, Box 591, 101 31, Stockholm, Sweden
| | - Daniel Västfjäll
- Department of Behavioral Sciences and Learning, Linköping University, 581 83, Linköping, Sweden
| | - Gustav Tinghög
- JEDILab, Division of Economics, Department of Management and Engineering, Linköping University, Linköping, Sweden
- JEDILab, Department of Health, Medicine and Caring Sciences, Linkoping University, Linkoping, Sweden
| | - Pontus Strimling
- Institute for Futures Studies, Box 591, 101 31, Stockholm, Sweden
- The Institute for Analytical Sociology, Linköping University, Linköping, Sweden
| | - Junhui Wu
- CAS Key Laboratory of Behavioral Science, Institute of Psychology, Chinese Academy of Sciences, Lincui Road 16, Chaoyang District, Beijing, 100101, China
- Department of Psychology, University of Chinese Academy of Sciences, Beijing, China
| | - Isabela Hazin
- Institute for Futures Studies, Box 591, 101 31, Stockholm, Sweden
- Department of Women's and Children's Health, University of Uppsala, Uppsala, Sweden
| | - Charity S Akotia
- Department of Psychology, University of Ghana, Legon, P.O. Box LG 84, Accra, Ghana
| | - Alisher Aldashev
- International School of Economics, Kazakh-British Technical University, 59 Tole Bi Street, 050000, Almaty, Kazakhstan
| | - Giulia Andrighetto
- Institute for Futures Studies, Box 591, 101 31, Stockholm, Sweden
- Mälardalen University, 721 23, Västerås, Sweden
- Institute of Cognitive Sciences and Technologies, National Research Council of Italy, 00185, Rome, Italy
| | - Adote Anum
- Department of Psychology, University of Ghana, Legon, P.O. Box LG 84, Accra, Ghana
| | - Gizem Arikan
- Department of Political Science, Trinity College Dublin, 2-3 College Green, Dublin 2, Ireland
| | - Fatemeh Bagherian
- Faculty of Education and Psychology, Shahid Beheshti University, Tehran, 1983969411, Iran
| | - Davide Barrera
- University of Turin and Collegio Carlo Alberto, Lungo Dora Siena 100, 10124, Turin, Italy
| | - Dana Basnight-Brown
- School of Humanities and Social Sciences, United States International University Africa, Box 14634 00800, Nairobi, Kenya
| | - Birzhan Batkeyev
- International School of Economics, Kazakh-British Technical University, 59 Tole Bi Street, 050000, Almaty, Kazakhstan
| | - Elizaveta Berezina
- Sunway University, No. 5, Jalan Universiti, Bandar Sunway, 47500, Petaling Jaya, Selangor Darul Ehsan, Malaysia
| | | | - Paweł Boski
- SWPS University, Chodakowska 19-31, 03-815, Warsaw, Poland
| | - Inna Bovina
- Moscow State University of Psychology and Education, Sretenka Str., 29, 127051, Moscow, Russia
| | - Bui Thi Thu Huyen
- Hanoi National University of Education, 136 Xuan Thuy Street, Cau Giay District, Hanoi, Vietnam
| | - Đorđe Čekrlija
- Faculty of Philosophy, University of Banja Luka, Vojvode Petra Bojovića 1A, 78000, Banja Luka, Bosnia and Herzegovina
- Institute of Psychology, University of Greifswald, Greifswald, Germany
| | - Hoon-Seok Choi
- Department of Psychology, Sungkyunkwan University, 25-2, Sungkyunkwan-Ro, Jongno-Gu, Seoul, 03063, Republic of Korea
| | - Carlos C Contreras-Ibáñez
- Departamento de Sociología, Universidad Autónoma Metropolitana-Unidad Iztapalapa, Av. Rafael Atlixco 186, Col. Vicentina, 09340, Ciudad de México, México
| | - Rui Costa-Lopes
- Instituto de Ciências Sociais, Universidade de Lisboa, Av. Prof. Anibal de Bettencourt, 9, 1600-189, Lisboa, Portugal
| | - Mícheál de Barra
- Center for Culture and Evolution, Brunel University London, Uxbridge, UB8 3PH, UK
| | - Piyanjali de Zoysa
- Faculty of Medicine, University of Colombo, Kynsey Road, Colombo 8, Sri Lanka
| | - Angela R Dorrough
- Department of Psychology, University of Cologne, Richard-Strauss-Str. 2, 50931, Cologne, Germany
| | - Nikolay Dvoryanchikov
- Moscow State University of Psychology and Education, Sretenka Str., 29, 127051, Moscow, Russia
| | - Jan B Engelmann
- Center for Research in Experimental Economics and Political Decision Making (CREED), Amsterdam School of Economics, University of Amsterdam, P.O. Box 15867, 1001 NJ, Amsterdam, The Netherlands
| | - Hyun Euh
- Gies College of Business, University of Illinois at Urbana-Champaign, 1206 S 6Th St., Champaign, IL, 61820, USA
| | - Xia Fang
- Department of Psychology and Behavioral Sciences, Zhejiang University, 148 Tianmushan Road, Hangzhou, Zhejiang, China
| | - Susann Fiedler
- Vienna University of Economics and Business, Welthandelsplatz 1, 1020, Vienna, Austria
| | - Olivia A Foster-Gimbel
- Stern School of Business, New York University, 40 West 4Th Street, Tisch Hall, Suite 700, New York, NY, 10012, USA
| | - Márta Fülöp
- HUN-REN Institute of Cognitive Neuroscience and Psychology, Research Centre of Natural Sciences, Budapest, Hungary
- Károli Gáspár University of the Reformed Church, Bécsi Út 324, Budapest, 1034, Hungary
| | - Ragna B Gardarsdottir
- Faculty of Psychology, University of Iceland, Nyi Gardur, Saemundargata 12, IS-102, Reykjavík, Iceland
| | - C M Hew D Gill
- Sunway University, No. 5, Jalan Universiti, Bandar Sunway, 47500, Petaling Jaya, Selangor Darul Ehsan, Malaysia
- Universal College Bangladesh, Dhaka, Bangladesh
| | - Andreas Glöckner
- Department of Psychology, University of Cologne, Richard-Strauss-Str. 2, 50931, Cologne, Germany
- Max Planck Institute for Research on Collective Goods, Kurt-Schumacher-Str. 10, 53113, Bonn, Germany
| | - Sylvie Graf
- Institute of Psychology, Czech Academy of Sciences, Veveří 97, 602 00, Brno, Czech Republic
| | - Ani Grigoryan
- Department of Personality Psychology, Yerevan State University, Alex Manoogian 1, 0025, Yerevan, Armenia
| | - Vladimir Gritskov
- Saint Petersburg State University, 7-9 Universitetskaya Emb., St Petersburg, 199034, Russia
| | | | - Peter Halama
- Center for Social and Psychological Sciences, Slovak Academy of Sciences, Dubravska Cesta 9, 841 04, Bratislava, Slovakia
| | - Andree Hartanto
- School of Social Sciences, Singapore Management University, 90 Stamford Road, Singapore, 178903, Singapore
| | - Tim Hopthrow
- School of Psychology, University of Kent, Canterbury, CT2 7NP, UK
| | - Martina Hřebíčková
- Institute of Psychology, Czech Academy of Sciences, Veveří 97, 602 00, Brno, Czech Republic
| | - Dzintra Iliško
- Daugavpils University, Latvia, Parades Street 1, Room 432, Daugvapils, 5400, Latvia
| | - Hirotaka Imada
- Department of Psychology, Royal Holloway, University of London, Egham, TW20 0EX, UK
| | - Hansika Kapoor
- Department of Psychology, Monk Prayogshala, 4114, C Wing, Oberoi Garden Estates, Off Saki Vihar Road, Andheri East, Mumbai, Maharashtra, 400072, India
| | - Kerry Kawakami
- Department of Psychology, York University, 4700 Keele Street, Toronto, ON, Canada
| | - Narine Khachatryan
- Department of Personality Psychology, Yerevan State University, Alex Manoogian 1, 0025, Yerevan, Armenia
| | - Natalia Kharchenko
- Kyiv International Institute of Sociology, Voloska Str., 8/5, Build. 4, Kyiv, 04070, Ukraine
| | - Toko Kiyonari
- Aoyama Gakuin University, 5-10-1, Fuchinobe, Chuo-Ku, Sagamihara-City, Kanagawa, 252-5258, Japan
| | - Michal Kohút
- Faculty of Philosophy and Arts, University of Trnava, Hornopotočná 23, 918 43, Trnava, Slovakia
| | - Lisa M Leslie
- Stern School of Business, New York University, 40 West 4Th Street, Tisch Hall, Suite 700, New York, NY, 10012, USA
| | - Yang Li
- Melbourne School of Psychological Science, University of Melbourne, 1116 Redmond Barry Building, Melbourne, VIC, 3010, Australia
| | - Norman P Li
- School of Social Sciences, Singapore Management University, 90 Stamford Road, Singapore, 178903, Singapore
| | - Zhuo Li
- Department of Psychology, University of Western Ontario, 1151 Richmond St, London, ON, N6A 5C2, Canada
| | - Kadi Liik
- School of Natural Sciences and Health, Tallinn University, Narva Rd 25, 10120, Tallinn, Estonia
| | - Angela T Maitner
- Department of Psychology, American University of Sharjah, PO Box 26666, Sharjah, United Arab Emirates
| | - Bernardo Manhique
- Faculty of Arts and Social Sciences, Department of Sociology, Eduardo Mondlane University, Av. Julius Nyerere, 3453, Main Campus, Maputo, Mozambique
| | - Harry Manley
- Faculty of Behavioral Sciences, Education, & Languages, HELP University Subang 2, Subang Jaya, Malaysia
- Faculty of Psychology, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand
| | - Imed Medhioub
- Department of Finance, Imam Mohammad Ibn Saud Islamic University (IMSIU), P.O. Box 5701, Riyadh, Saudi Arabia
| | - Sari Mentser
- Department of Education and Psychology, The Open University of Israel, 1 University Road, 4353701, Raanana, Israel
| | - Pegah Nejat
- Faculty of Education and Psychology, Shahid Beheshti University, Tehran, 1983969411, Iran
| | - Orlando Nipassa
- Faculty of Arts and Social Sciences, Department of Sociology, Eduardo Mondlane University, Av. Julius Nyerere, 3453, Main Campus, Maputo, Mozambique
| | - Ravit Nussinson
- Department of Education and Psychology, The Open University of Israel, 1 University Road, 4353701, Raanana, Israel
- Institute of Information Processing and Decision Making, University of Haifa, Abba Khoushy Ave 199, 3498838, Haifa, Israel
| | - Nneoma G Onyedire
- Department of Psychology, University of Nigeria, Nsukka, 41000, Nigeria
| | - Ike E Onyishi
- Department of Psychology, University of Nigeria, Nsukka, 41000, Nigeria
| | - Penny Panagiotopoulou
- Department of Education and Social Work, University of Patras, 26500, Rion, Patras, Greece
| | - Lorena R Perez-Floriano
- Facultad de Economía y Empresa, Universidad Diego Portales, Av. Sta. Clara 797, Huechuraba, Región Metropolitana, Chile
| | - Minna Persson
- Institute for Futures Studies, Box 591, 101 31, Stockholm, Sweden
| | - Anna-Maija Pirttilä-Backman
- Faculty of Social Sciences, Social Psychology, University of Helsinki, PO Box 54 (Unioninkatu 37), 00014, Helsinki, Finland
| | - Marianna Pogosyan
- Leadership and Management, Amsterdam Business School, University of Amsterdam, PO Box 15953, 1001 NB, Amsterdam, The Netherlands
| | - Jana Raver
- Queen's University, Goodes Hall, Kingston, ON, K7L 3N6, Canada
| | - Ricardo Borges Rodrigues
- Instituto Universitário de Lisboa ISCTE-IUL, CIS, Avenida das Forças Armadas, 1649-026, Lisbon, Portugal
| | - Sara Romanò
- Department of Culture, Politics and Society, University of Turin, 10135, Turin, Italy
| | - Pedro P Romero
- Experimental and Computational Economics Lab (ECEL), School of Economics, Universidad San Francisco de Quito USFQ, Diego de Robles y Pampite, Quito, Ecuador
| | - Inari Sakki
- Faculty of Social Sciences, Social Psychology, University of Helsinki, PO Box 42 (Unioninkatu 33), 00014, Helsinki, Finland
| | - Alvaro San Martin
- IESE Business School, Camino del Cerro del Águila, 3, 28023, Madrid, Spain
| | - Sara Sherbaji
- Department of International Studies, American University of Sharjah, PO Box 26666, Sharjah, United Arab Emirates
- Department of Anthropology, University College London, Gower Street, London, WC1E 6BT, UK
| | - Hiroshi Shimizu
- Kwansei Gakuin University, 1-155 Uegahara 1Bancho, Nishinomiya, Hyogo, 662-8501, Japan
| | - Brent Simpson
- Department of Sociology, University of South Carolina, Columbia, SC, 29208, USA
| | - Erna Szabo
- Department of International Management, Johannes Kepler University, Altenberger Str. 69, 4040, Linz, Austria
| | - Kosuke Takemura
- Faculty of Economics, Shiga University, 1-1-1 Banba, Hikone, Shiga, 522-8522, Japan
| | - Maria Luisa Mendes Teixeira
- Mackenzie Presbyterian University, Business Administration Postgraduate Program, Consolação St, 930, São Paulo, CEP 01302-000, Brazil
| | - Napoj Thanomkul
- Faculty of Psychology, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand
| | - Habib Tiliouine
- Labo-PECS, Faculty of Social Sciences, Université d'Oran 2, 31000, Oran, Algeria
| | - Giovanni A Travaglino
- Department of Law and Criminology, Institute for the Study of Power, Crime, and Society, Royal Holloway, University of London, Egham, TW20 0EX, UK
| | - Yannis Tsirbas
- Department of Political Science and Public Administration, University of Athens, 6 Themistokleous Street, 10678, Athens, Greece
| | - Sita Widodo
- Department of Psychology, Universitas Airlangga, Kampus B Unair Jalan Airlangga 4-6, Surabaya, 60286, Indonesia
| | - Rizqy Zein
- Department of Psychology, Universitas Airlangga, Kampus B Unair Jalan Airlangga 4-6, Surabaya, 60286, Indonesia
| | - Lina Zirganou-Kazolea
- Department of Political Science and Public Administration, University of Athens, 6 Themistokleous Street, 10678, Athens, Greece
| | - Kimmo Eriksson
- Institute for Futures Studies, Box 591, 101 31, Stockholm, Sweden
- Mälardalen University, 721 23, Västerås, Sweden
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47
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AbuAlia KFN, Damm E, Ullrich KK, Mukaj A, Parvanov E, Forejt J, Odenthal-Hesse L. Natural variation in the zinc-finger-encoding exon of Prdm9 affects hybrid sterility phenotypes in mice. Genetics 2024; 226:iyae004. [PMID: 38217871 PMCID: PMC10917509 DOI: 10.1093/genetics/iyae004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 01/04/2024] [Accepted: 01/05/2024] [Indexed: 01/15/2024] Open
Abstract
PRDM9-mediated reproductive isolation was first described in the progeny of Mus musculus musculus (MUS) PWD/Ph and Mus musculus domesticus (DOM) C57BL/6J inbred strains. These male F1 hybrids fail to complete chromosome synapsis and arrest meiosis at prophase I, due to incompatibilities between the Prdm9 gene and hybrid sterility locus Hstx2. We identified 14 alleles of Prdm9 in exon 12, encoding the DNA-binding domain of the PRDM9 protein in outcrossed wild mouse populations from Europe, Asia, and the Middle East, 8 of which are novel. The same allele was found in all mice bearing introgressed t-haplotypes encompassing Prdm9. We asked whether 7 novel Prdm9 alleles in MUS populations and the t-haplotype allele in 1 MUS and 3 DOM populations induce Prdm9-mediated reproductive isolation. The results show that only combinations of the dom2 allele of DOM origin and the MUS msc1 allele ensure complete infertility of intersubspecific hybrids in outcrossed wild populations and inbred mouse strains examined so far. The results further indicate that MUS mice may share the erasure of PRDM9msc1 binding motifs in populations with different Prdm9 alleles, which implies that erased PRDM9 binding motifs may be uncoupled from their corresponding Prdm9 alleles at the population level. Our data corroborate the model of Prdm9-mediated hybrid sterility beyond inbred strains of mice and suggest that sterility alleles of Prdm9 may be rare.
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Affiliation(s)
- Khawla F N AbuAlia
- Research Group Meiotic Recombination and Genome Instability, Max Planck Institute for Evolutionary Biology, Plön D-24306, Germany
| | - Elena Damm
- Research Group Meiotic Recombination and Genome Instability, Max Planck Institute for Evolutionary Biology, Plön D-24306, Germany
| | - Kristian K Ullrich
- Research Group Meiotic Recombination and Genome Instability, Max Planck Institute for Evolutionary Biology, Plön D-24306, Germany
| | - Amisa Mukaj
- Laboratory of Mouse Molecular Genetics, Institute of Molecular Genetics, Czech Academy of Sciences, Vestec CZ-25250, Czech Republic
| | - Emil Parvanov
- Laboratory of Mouse Molecular Genetics, Institute of Molecular Genetics, Czech Academy of Sciences, Vestec CZ-25250, Czech Republic
- Department of Translational Stem Cell Biology, Research Institute of the Medical University of Varna, 9002 Varna, Bulgaria
- Ludwig Boltzmann Institute for Digital Health and Patient Safety, Medical University of Vienna, 1090 Vienna, Austria
| | - Jiri Forejt
- Laboratory of Mouse Molecular Genetics, Institute of Molecular Genetics, Czech Academy of Sciences, Vestec CZ-25250, Czech Republic
| | - Linda Odenthal-Hesse
- Research Group Meiotic Recombination and Genome Instability, Max Planck Institute for Evolutionary Biology, Plön D-24306, Germany
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48
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Barragan AC, Collenberg M, Schwab R, Kersten S, Kerstens MHL, Požárová D, Bezrukov I, Bemm F, Kolár F, Weigel D. Deleterious phenotypes in wild Arabidopsis arenosa populations are common and linked to runs of homozygosity. G3 (Bethesda) 2024; 14:jkad290. [PMID: 38124484 PMCID: PMC10917499 DOI: 10.1093/g3journal/jkad290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 07/07/2023] [Accepted: 12/05/2023] [Indexed: 12/23/2023]
Abstract
In this study, we aimed to systematically assess the frequency at which potentially deleterious phenotypes appear in natural populations of the outcrossing model plant Arabidopsis arenosa, and to establish their underlying genetics. For this purpose, we collected seeds from wild A. arenosa populations and screened over 2,500 plants for unusual phenotypes in the greenhouse. We repeatedly found plants with obvious phenotypic defects, such as small stature and necrotic or chlorotic leaves, among first-generation progeny of wild A. arenosa plants. Such abnormal plants were present in about 10% of maternal sibships, with multiple plants with similar phenotypes in each of these sibships, pointing to a genetic basis of the observed defects. A combination of transcriptome profiling, linkage mapping and genome-wide runs of homozygosity patterns using a newly assembled reference genome indicated a range of underlying genetic architectures associated with phenotypic abnormalities. This included evidence for homozygosity of certain genomic regions, consistent with alleles that are identical by descent being responsible for these defects. Our observations suggest that deleterious alleles with different genetic architectures are segregating at appreciable frequencies in wild A. arenosa populations.
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Affiliation(s)
- A Cristina Barragan
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
- The Sainsbury Laboratory, Norwich NR4 7UH, UK
| | - Maximilian Collenberg
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
- Catalent, 73614 Schorndorf, Germany
| | - Rebecca Schwab
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
| | - Sonja Kersten
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
- Institute of Plant Breeding, University of Hohenheim, 70599 Stuttgart, Germany
| | - Merijn H L Kerstens
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
- Department of Plant Developmental Biology, Wageningen University and Research, 6708 PB, Wageningen, Netherlands
| | - Doubravka Požárová
- Department of Botany, Faculty of Science, Charles University, 128 01 Prague, Czech Republic
- The MAMA AI, 100 00 Prague, Czech Republic
| | - Ilja Bezrukov
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
| | - Felix Bemm
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
- KWS Saat, 37574 Einbeck, Germany
| | - Filip Kolár
- Department of Botany, Faculty of Science, Charles University, 128 01 Prague, Czech Republic
| | - Detlef Weigel
- Department of Molecular Biology, Max Planck Institute for Biology, 72076 Tübingen, Germany
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49
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Mansky J, Wang H, Wagner-Döbler I, Tomasch J. The effect of site-specific recombinases XerCD on the removal of over-replicated chromosomal DNA through outer membrane vesicles in bacteria. Microbiol Spectr 2024; 12:e0234323. [PMID: 38349173 PMCID: PMC10913375 DOI: 10.1128/spectrum.02343-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 01/22/2024] [Indexed: 03/06/2024] Open
Abstract
Outer membrane vesicles (OMVs) are universally produced by Gram-negative bacteria and play important roles in symbiotic and pathogenic interactions. The DNA from the lumen of OMVs from the Alphaproteobacterium Dinoroseobacter shibae was previously shown to be enriched for the region around the terminus of replication ter and specifically for the recognition sequence dif of the two site-specific recombinases XerCD. These enzymes are highly conserved in bacteria and play an important role in the last phase of cell division. Here, we show that a similar enrichment of ter and dif is found in the DNA inside OMVs from Prochlorococcus marinus, Pseudomonas aeruginosa, Vibrio cholerae, and Escherichia coli. The deletion of xerC or xerD in E. coli reduced the enrichment peak directly at the dif sequence, while the enriched DNA region around ter became broader, demonstrating that either enzyme influences the DNA content inside the lumen of OMVs. We propose that the intra-vesicle DNA originated from over-replication repair and the XerCD enzymes might play a role in this process, providing them with a new function in addition to resolving chromosome dimers.IMPORTANCEImprecise termination of replication can lead to over-replicated parts of bacterial chromosomes that have to be excised and removed from the dividing cell. The underlying mechanism is poorly understood. Our data show that outer membrane vesicles (OMVs) from diverse Gram-negative bacteria are enriched for DNA around the terminus of replication ter and the site-specific XerCD recombinases influence this enrichment. Clearing the divisome from over-replicated parts of the bacterial chromosome might be a so far unrecognized and conserved function of OMVs.
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Affiliation(s)
- Johannes Mansky
- Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany
| | - Hui Wang
- Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany
| | - Irene Wagner-Döbler
- Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany
| | - Jürgen Tomasch
- Laboratory of Anoxygenic Phototrophs, Institute of Microbiology of the Czech Academy of Science–Centre Algatech, Třeboň, Czech Republic
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50
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Cooke SJ, Piczak ML, Singh NJ, Åkesson S, Ford AT, Chowdhury S, Mitchell GW, Norris DR, Hardesty-Moore M, McCauley D, Hammerschlag N, Tucker MA, Horns JJ, Reisinger RR, Kubelka V, Lennox RJ. Animal migration in the Anthropocene: threats and mitigation options. Biol Rev Camb Philos Soc 2024. [PMID: 38437713 DOI: 10.1111/brv.13066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 02/07/2024] [Accepted: 02/09/2024] [Indexed: 03/06/2024]
Abstract
Animal migration has fascinated scientists and the public alike for centuries, yet migratory animals are facing diverse threats that could lead to their demise. The Anthropocene is characterised by the reality that humans are the dominant force on Earth, having manifold negative effects on biodiversity and ecosystem function. Considerable research focus has been given to assessing anthropogenic impacts on the numerical abundance of species/populations, whereas relatively less attention has been devoted to animal migration. However, there are clear linkages, for example, where human-driven impacts on migration behaviour can lead to population/species declines or even extinction. Here, we explore anthropogenic threats to migratory animals (in all domains - aquatic, terrestrial, and aerial) using International Union for the Conservation of Nature (IUCN) Threat Taxonomy classifications. We reveal the diverse threats (e.g. human development, disease, invasive species, climate change, exploitation, pollution) that impact migratory wildlife in varied ways spanning taxa, life stages and type of impact (e.g. from direct mortality to changes in behaviour, health, and physiology). Notably, these threats often interact in complex and unpredictable ways to the detriment of wildlife, further complicating management. Fortunately, we are beginning to identify strategies for conserving and managing migratory animals in the Anthropocene. We provide a set of strategies that, if embraced, have the potential to ensure that migratory animals, and the important ecological functions sustained by migration, persist.
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Affiliation(s)
- Steven J Cooke
- Department of Biology and Institute of Environmental and Interdisciplinary Science, Carleton University, 1125 Colonel By Dr, Ottawa, Ontario, K1S 5B6, Canada
| | - Morgan L Piczak
- Department of Biology and Institute of Environmental and Interdisciplinary Science, Carleton University, 1125 Colonel By Dr, Ottawa, Ontario, K1S 5B6, Canada
| | - Navinder J Singh
- Department of Wildlife, Fish and Environmental Studies, Faculty of Forest Sciences, Swedish University of Agricultural Sciences, Umeå, 90183, Sweden
| | - Susanne Åkesson
- Department of Biology, Centre for Animal Movement Research, Lund University, Ecology Building, Lund, 22362, Sweden
| | - Adam T Ford
- Department of Biology, University of British Columbia, 1177 Research Road, Kelowna, British Columbia, V1V 1V7, Canada
| | - Shawan Chowdhury
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstr, 15, Leipzig, 04318, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstr, 4, Leipzig, 04103, Germany
| | - Greg W Mitchell
- Department of Biology and Institute of Environmental and Interdisciplinary Science, Carleton University, 1125 Colonel By Dr, Ottawa, Ontario, K1S 5B6, Canada
- Wildlife Research Division, Science and Technology Branch, Environment and Climate Change Canada, 1125 Colonel By Dr, Ottawa, Ontario, K1A 0H3, Canada
| | - D Ryan Norris
- Department of Integrative Biology, University of Guelph, 50 Stone Rd. E, Guelph, Ontario, N1G 2W1, Canada
| | - Molly Hardesty-Moore
- Department of Ecology, Evolution, and Marine Biology and Marine Science Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Douglas McCauley
- Department of Ecology, Evolution, and Marine Biology and Marine Science Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Neil Hammerschlag
- Atlantic Shark Expeditions, 29 Wideview Lane, Boutiliers Point, Nova Scotia, B3Z 0M9, Canada
| | - Marlee A Tucker
- Radboud Institute of Biological and Environmental Sciences, Radboud University, Houtlaan 4, Nijmegen, 6525, The Netherlands
| | - Joshua J Horns
- Department of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT, 84112, USA
| | - Ryan R Reisinger
- School of Ocean and Earth Science, University of Southampton, National Oceanography Center Southampton, University Way, Southampton, SO14 3ZH, UK
| | - Vojtěch Kubelka
- Dept of Zoology and Centre for Polar Ecology, Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - Robert J Lennox
- Ocean Tracking Network, Faculty of Science, Dalhousie University, 1355 Oxford St, Halifax, Nova Scotia, B3H 3Z1, Canada
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