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For: Nishi H, Koike R, Ota M. Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization. Proteins 2011;79:2372-9. [DOI: 10.1002/prot.23084] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2010] [Revised: 04/22/2011] [Accepted: 05/09/2011] [Indexed: 01/15/2023]
Number Cited by Other Article(s)
1
Fleming JR, Schupfner M, Busch F, Baslé A, Ehrmann A, Sterner R, Mayans O. Evolutionary Morphing of Tryptophan Synthase: Functional Mechanisms for the Enzymatic Channeling of Indole. J Mol Biol 2018;430:5066-5079. [PMID: 30367843 DOI: 10.1016/j.jmb.2018.10.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2018] [Revised: 08/29/2018] [Accepted: 10/19/2018] [Indexed: 10/28/2022]
2
An extended loop in CE7 carbohydrate esterase family is dispensable for oligomerization but required for activity and thermostability. J Struct Biol 2016;194:434-45. [DOI: 10.1016/j.jsb.2016.04.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Revised: 04/07/2016] [Accepted: 04/13/2016] [Indexed: 11/20/2022]
3
Kinjo AR. A unified statistical model of protein multiple sequence alignment integrating direct coupling and insertions. Biophys Physicobiol 2016;13:45-62. [PMID: 27924257 PMCID: PMC5042171 DOI: 10.2142/biophysico.13.0_45] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 03/18/2016] [Indexed: 12/01/2022]  Open
4
Aoto S, Yura K. Case study on the evolution of hetero-oligomer interfaces based on the differences in paralogous proteins. Biophys Physicobiol 2015;12:103-16. [PMID: 27493859 PMCID: PMC4736837 DOI: 10.2142/biophysico.12.0_103] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Accepted: 11/09/2015] [Indexed: 12/31/2022]  Open
5
Marsh JA, Teichmann SA. Structure, dynamics, assembly, and evolution of protein complexes. Annu Rev Biochem 2014;84:551-75. [PMID: 25494300 DOI: 10.1146/annurev-biochem-060614-034142] [Citation(s) in RCA: 284] [Impact Index Per Article: 28.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
6
Sudha G, Nussinov R, Srinivasan N. An overview of recent advances in structural bioinformatics of protein-protein interactions and a guide to their principles. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2014;116:141-50. [PMID: 25077409 DOI: 10.1016/j.pbiomolbio.2014.07.004] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Accepted: 07/13/2014] [Indexed: 12/20/2022]
7
Zhang X, Perica T, Teichmann SA. Evolution of protein structures and interactions from the perspective of residue contact networks. Curr Opin Struct Biol 2013;23:954-63. [DOI: 10.1016/j.sbi.2013.07.004] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2013] [Revised: 07/02/2013] [Accepted: 07/04/2013] [Indexed: 10/26/2022]
8
Levy ED, Teichmann S. Structural, evolutionary, and assembly principles of protein oligomerization. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2013;117:25-51. [PMID: 23663964 DOI: 10.1016/b978-0-12-386931-9.00002-7] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
9
Nishi H, Hashimoto K, Madej T, Panchenko AR. Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2013;117:3-24. [PMID: 23663963 PMCID: PMC3786560 DOI: 10.1016/b978-0-12-386931-9.00001-5] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
10
Koike R, Ota M. SCPC: a method to structurally compare protein complexes. Bioinformatics 2011;28:324-30. [DOI: 10.1093/bioinformatics/btr654] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
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