Bayes estimate of primary threshold in clusterwise functional magnetic resonance imaging inferences

CLEAN: Leveraging spatial autocorrelation in neuroimaging data in clusterwise inference

While clusterwise inference is a popular approach in neuroimaging that improves sensitivity, current methods do not account for explicit spatial autocorrelations because most use univariate test statistics to construct cluster-extent statistics. Failure to account for such dependencies could result in decreased reproducibility. To address methodological and computational challenges, we propose a new powerful and fast statistical method called CLEAN (Clusterwise inference Leveraging spatial Autocorrelations in Neuroimaging). CLEAN computes multivariate test statistics by modelling brain-wise spatial autocorrelations, constructs cluster-extent test statistics, and applies a refitting-free resampling approach to control false positives. We validate CLEAN using simulations and applications to the Human Connectome Project. This novel method provides a new direction in neuroimaging that paces with advances in high-resolution MRI data which contains a substantial amount of spatial autocorrelation.

An integrated cluster-wise significance measure for fMRI analysis

Cluster-wise inference is widely used in fMRI analysis. The cluster-level statistic is often obtained by counting the number of intra-cluster voxels which surpass a voxel-level statistical significance threshold. This measure can be sub-optimal regarding the power and false-positive error rate because the suprathreshold voxel count neglects the voxel-wise significance levels and ignores the dependence between voxels. This article aims to provide a new Integrated Cluster-wise significance Measure (ICM) for cluster-level significance determination in cluster-wise fMRI analysis by integrating cluster extent, voxel-level significance (e.g., p values), and activation dependence between within-cluster voxels. We develop a computationally efficient strategy for ICM based on probabilistic approximation theories. Consequently, the computational load for ICM-based cluster-wise inference (e.g., permutation tests) is affordable. We validate the proposed method via extensive simulations and then apply it to two fMRI data sets. The results demonstrate that ICM can improve the power with well-controlled family-wise error (FWE).