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Ding YY, Zhou H, Peng-Deng, Zhang BQ, Zhang ZJ, Wang GH, Zhang SY, Wu ZR, Wang YR, Liu YQ. Antimicrobial activity of natural and semi-synthetic carbazole alkaloids. Eur J Med Chem 2023; 259:115627. [PMID: 37467619 DOI: 10.1016/j.ejmech.2023.115627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 06/22/2023] [Accepted: 07/06/2023] [Indexed: 07/21/2023]
Abstract
Since the first natural carbazole alkaloid, murrayanine, was isolated from Mwraya Spreng, carbazole alkaloid derivatives have been widely concerned for their anti-tumor, anti-viral and anti-bacterial activities. In recent decades, a growing body of data suggest that carbazole alkaloids and their derivatives have different biological activities. This is the first comprehensive description of the antifungal and antibacterial activities of carbazole alkaloids in the past decade (2012-2022), including natural and partially synthesized carbazole alkaloids in the past decade. Finally, the challenges and problems faced by this kind of alkaloids are summarized. This paper will be helpful for further exploration of this kind of alkaloids.
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Affiliation(s)
- Yan-Yan Ding
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China; Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Science, Huzhou University, Huzhou, 313000, China
| | - Han Zhou
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Peng-Deng
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Bao-Qi Zhang
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Zhi-Jun Zhang
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Guang-Han Wang
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Shao-Yong Zhang
- Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Science, Huzhou University, Huzhou, 313000, China
| | - Zheng-Rong Wu
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Yi-Rong Wang
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China
| | - Ying-Qian Liu
- School of Pharmacy, Lanzhou University, Lanzhou, 730000, China; Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Science, Huzhou University, Huzhou, 313000, China; State Key Laboratory of Grassland Agro-ecosystems, Lanzhou University, Lanzhou, 730000, China.
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Alencar WLM, da Silva Arouche T, Neto AFG, de Castro Ramalho T, de Carvalho Júnior RN, de Jesus Chaves Neto AM. Interactions of Co, Cu, and non-metal phthalocyanines with external structures of SARS-CoV-2 using docking and molecular dynamics. Sci Rep 2022; 12:3316. [PMID: 35228662 PMCID: PMC8885651 DOI: 10.1038/s41598-022-07396-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 02/10/2022] [Indexed: 02/06/2023] Open
Abstract
The new coronavirus, SARS-CoV-2, caused the COVID-19 pandemic, characterized by its high rate of contamination, propagation capacity, and lethality rate. In this work, we approach the use of phthalocyanines as an inhibitor of SARS-CoV-2, as they present several interactive properties of the phthalocyanines (Pc) of Cobalt (CoPc), Copper (CuPc) and without a metal group (NoPc) can interact with SARS-CoV-2, showing potential be used as filtering by adsorption on paints on walls, masks, clothes, and air conditioning filters. Molecular modeling techniques through Molecular Docking and Molecular Dynamics were used, where the target was the external structures of the virus, but specifically the envelope protein, main protease, and Spike glycoprotein proteases. Using the g_MM-GBSA module and with it, the molecular docking studies show that the ligands have interaction characteristics capable of adsorbing the structures. Molecular dynamics provided information on the root-mean-square deviation of the atomic positions provided values between 1 and 2.5. The generalized Born implicit solvation model, Gibbs free energy, and solvent accessible surface area approach were used. Among the results obtained through molecular dynamics, it was noticed that interactions occur since Pc could bind to residues of the active site of macromolecules, demonstrating good interactions; in particular with CoPc. Molecular couplings and free energy showed that S-gly active site residues interacted strongly with phthalocyanines with values of - 182.443 kJ/mol (CoPc), 158.954 kJ/mol (CuPc), and - 129.963 kJ/mol (NoPc). The interactions of Pc's with SARS-CoV-2 may predict some promising candidates for antagonists to the virus, which if confirmed through experimental approaches, may contribute to resolving the global crisis of the COVID-19 pandemic.
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Affiliation(s)
- Wilson Luna Machado Alencar
- Laboratory of Preparation and Computation of Nanomaterials (LPCN), Federal University of Pará, C. P. 479, Belem, PA, 66075-110, Brazil
- Pos-Graduation Program in Engineering of Natural Resources of the Amazon, ITEC, Federal University of Pará, C. P. 2626, Belém, PA, 66050-540, Brazil
- Federal Institute of Pará (IFPA), C. P. BR 316, Km 61, Castanhal, PA, 68740-970, Brazil
| | - Tiago da Silva Arouche
- Laboratory of Preparation and Computation of Nanomaterials (LPCN), Federal University of Pará, C. P. 479, Belem, PA, 66075-110, Brazil
| | | | | | - Raul Nunes de Carvalho Júnior
- Pos-Graduation Program in Engineering of Natural Resources of the Amazon, ITEC, Federal University of Pará, C. P. 2626, Belém, PA, 66050-540, Brazil
- Pos-Graduation Program in Chemical Engineering, ITEC, Federal University of Pará, C. P. 479, Belém, PA, 66075-900, Brazil
| | - Antonio Maia de Jesus Chaves Neto
- Laboratory of Preparation and Computation of Nanomaterials (LPCN), Federal University of Pará, C. P. 479, Belem, PA, 66075-110, Brazil.
- Pos-Graduation Program in Engineering of Natural Resources of the Amazon, ITEC, Federal University of Pará, C. P. 2626, Belém, PA, 66050-540, Brazil.
- Pos-Graduation Program in Chemical Engineering, ITEC, Federal University of Pará, C. P. 479, Belém, PA, 66075-900, Brazil.
- National Professional Master's in Physics Teaching, Federal University of Pará, C. P. 479, Belém, PA, 66075-110, Brazil.
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Settipalli PC, Reddy YP, Gudise VB, Anwar S. Knoevenagel‐Friedel‐Crafts‐Hemiketalization Triple Cascade Reaction: A Diastereoselective Formal [1+2+3] Cyclization Towards Indenonaphthopyran Scaffolds. ChemistrySelect 2021. [DOI: 10.1002/slct.202004619] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Poorna Chandrasekhar Settipalli
- Division of Chemistry Department of Sciences and Humanities Vignan's Foundation for Science Technology and Research (Deemed to be University) Vadlamudi, Guntur - 522 213 Andhra Pradesh India
| | - Yeruva Pavankumar Reddy
- Division of Chemistry Department of Sciences and Humanities Vignan's Foundation for Science Technology and Research (Deemed to be University) Vadlamudi, Guntur - 522 213 Andhra Pradesh India
| | - Veera Babu Gudise
- Division of Chemistry Department of Sciences and Humanities Vignan's Foundation for Science Technology and Research (Deemed to be University) Vadlamudi, Guntur - 522 213 Andhra Pradesh India
| | - Shaik Anwar
- Division of Chemistry Department of Sciences and Humanities Vignan's Foundation for Science Technology and Research (Deemed to be University) Vadlamudi, Guntur - 522 213 Andhra Pradesh India
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