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Arya CG, Kishore R, Gupta P, Gondru R, Arockiaraj J, Pasupuleti M, Chandrakanth M, Punya VP, Banothu J. Identification of coumarin - benzimidazole hybrids as potential antibacterial agents: Synthesis, in vitro and in vivo biological assessment, and ADMET prediction. Bioorg Med Chem Lett 2024; 110:129881. [PMID: 38996936 DOI: 10.1016/j.bmcl.2024.129881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 06/14/2024] [Accepted: 07/08/2024] [Indexed: 07/14/2024]
Abstract
The direct-linked coumarin-benzimidazole hybrids, featuring aryl and n-butyl substituents at the N1-position of benzimidazole were synthesized through a Knoevenagel condensation reaction. This reaction involved the condensation of 1,2-diaminobenzene derivatives with coumarin-3-carboxylic acids in the presence of polyphosphoric acid (PPA) at 154 °C. The in vitro antibacterial potency of the hybrid molecules against different gram-positive and gram-negative bacterial strains led to the identification of the hybrids 6m and 6p with a MIC value of 6.25 μg/mL against a gram-negative bacterium, Klebsiella pneumonia ATCC 27736. Cell viability studies on THP-1 cells demonstrated that the compounds 6m and 6p were non-toxic at a concentration of 50 µM. Furthermore, in vivo efficacy studies using a murine neutropenic thigh infection model revealed that both compounds significantly reduced bacterial (Klebsiella pneumonia ATCC 27736) counts (more than 2 log) compared to the control group. Additionally, both compounds exhibited favorable physicochemical properties and drug-likeness characteristics. Consequently, these compounds hold promise as lead candidates for further development of effective antibacterial drugs.
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Affiliation(s)
- C G Arya
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode 673601, Kerala, India
| | - Raj Kishore
- Division of Molecular Microbiology & Immunology, CSIR-Central Drug Research Institute, Sitapur Road, Sector 10, Janakipuram Extension, Lucknow 226031, Uttar Pradesh, India
| | - Pooja Gupta
- Division of Molecular Microbiology & Immunology, CSIR-Central Drug Research Institute, Sitapur Road, Sector 10, Janakipuram Extension, Lucknow 226031, Uttar Pradesh, India
| | - Ramesh Gondru
- Food Chemistry Division, ICMR-National Institute of Nutrition (NIN), Hyderabad 500007, Telangana, India
| | - Jesu Arockiaraj
- Department of Biotechnology, Faculty of Science and Humanities, SRM Institute of Science and Technology, Kattankulathur, 603 203 Chennai, Tamil Nadu, India
| | - Mukesh Pasupuleti
- Division of Molecular Microbiology & Immunology, CSIR-Central Drug Research Institute, Sitapur Road, Sector 10, Janakipuram Extension, Lucknow 226031, Uttar Pradesh, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
| | - Munugala Chandrakanth
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode 673601, Kerala, India
| | - V P Punya
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode 673601, Kerala, India
| | - Janardhan Banothu
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode 673601, Kerala, India.
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Recent advances on biologically active coumarin-based hybrid compounds. Med Chem Res 2023. [DOI: 10.1007/s00044-023-03025-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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Kim JK, Liu Y, Gong M, Li Y, Huang M, Wu Y. A facile visible-light-induced one-pot synthesis of 3-alkyl coumarins from simple salicylaldehydes. Tetrahedron 2023. [DOI: 10.1016/j.tet.2023.133249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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O N, Bodke YD, B T, Venkatesh T, B M. Synthesis, characterization and biological evaluation of heterocyclic compounds containing 4-methylumbelliferone. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Alım Z, Tunç T, Demirel N, Günel A, Karacan N. Synthesis of benzimidazole derivatives containing amide bond and biological evaluation as acetylcholinesterase, carbonic anhydrase I and II inhibitors. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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Arya C, Chandrakanth M, Fabitha K, Thomas NM, Pramod RN, Gondru R, Banothu J. Coumarin – Benzimidazole hybrids: A review on Diverse synthetic strategies. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Rabiei K, Niyazi S. Acidic Nano Zeolite Clinoptillolite; Green and Heterogeneous Catalyst for One-Pot Multi-Component Synthesis of 3-Substituted-Amino Coumarins. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2072909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Khadijeh Rabiei
- Department of Organic Chemistry, Faculty of Science, Qom University of Technology, Qom, Iran
| | - Shabnam Niyazi
- Department of Organic Chemistry, Faculty of Science, Qom University of Technology, Qom, Iran
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Morais EM, Silva AAR, de Sousa FWA, de Azevedo IMB, Silva HF, Santos AMG, Beserra Júnior JEA, de Carvalho CP, Eberlin MN, Porcari AM, Araújo FDDS. Endophytic Trichoderma strains isolated from forest species of the Cerrado-Caatinga ecotone are potential biocontrol agents against crop pathogenic fungi. PLoS One 2022; 17:e0265824. [PMID: 35427356 PMCID: PMC9012399 DOI: 10.1371/journal.pone.0265824] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 03/08/2022] [Indexed: 11/19/2022] Open
Abstract
The indiscriminate use of chemical pesticides increasingly harms the health of living beings and the environment. Thus, biological control carried out by microorganisms has gained prominence, since it consists of an environmentally friendly alternative to the use of pesticides for controlling plant diseases. Herein, we evaluated the potential role of endophytic Trichoderma strains isolated from forest species of the Cerrado-Caatinga ecotone as biological control agents of crop pathogenic fungi. Nineteen Trichoderma strains were used to assess the antagonistic activity by in vitro bioassays against the plant pathogens Colletotrichum truncatum, Lasiodiplodia theobromae, Macrophomina phaseolina, and Sclerotium delphinii isolated from soybean, cacao, fava bean, and black pepper crops, respectively. All Trichoderma strains demonstrated inhibitory activity on pathogen mycelial growth, with maximum percent inhibition of 70% against C. truncatum, 78% against L. theobromae, 78% against M. phaseolina, and 69% against S. delphinii. Crude methanol extracts (0.5 to 2.0 mg mL-1) of Trichoderma strains were able to inhibit the growth of C. truncatum, except Trichoderma sp. T3 (UFPIT06) and T. orientale (UFPIT09 and UFPIT17) at 0.5 mg mL-1, indicating that the endophytes employ a biocontrol mechanism related to antibiosis, together with multiple mechanisms. Discriminant metabolites of Trichoderma extracts were unveiled by liquid chromatography-tandem mass spectrometry-based metabolomics combined with principal component analysis (PCA), which included antifungal metabolites and molecules with other bioactivities. These results highlight the biocontrol potential of Trichoderma strains isolated from the Cerrado-Caatinga ecotone against crop pathogenic fungi, providing support for ongoing research on disease control in agriculture.
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Affiliation(s)
| | - Alex Ap. Rosini Silva
- MS4Life Laboratory of Mass Spectrometry, Health Sciences Postgraduate Program, São Francisco University, Braganca Paulista, São Paulo, SP, Brazil
| | | | | | - Helane França Silva
- Campus Professora Cinobelina Elvas, Federal University of Piauí, Bom Jesus, PI, Brazil
| | | | | | - Caroline Pais de Carvalho
- School of Material Engineering an Nanotechnology, MackMass Laboratory, Mackenzie Presbyterian University, São Paulo, SP, Brazil
| | - Marcos Nogueira Eberlin
- School of Material Engineering an Nanotechnology, MackMass Laboratory, Mackenzie Presbyterian University, São Paulo, SP, Brazil
| | - Andreia M. Porcari
- MS4Life Laboratory of Mass Spectrometry, Health Sciences Postgraduate Program, São Francisco University, Braganca Paulista, São Paulo, SP, Brazil
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Niyazi S, Pouramiri B, Rabiei K. Functionalized nanoclinoptilote as a novel and green catalyst for the synthesis of Mannich bases derived from 4-hydroxy coumarin. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Novel thioether linked 4-hydroxycoumarin derivatives: Synthesis, characterization, in vitro pharmacological investigation and molecular docking studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131642] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Sukanya S, Venkatesh T, Aditya Rao S, Joy MN. Efficient L-Proline catalyzed synthesis of some new (4-substituted-phenyl)-1,5-dihydro-2H-pyrimido[4,5-d][1,3]thiazolo[3,2a]-pyrimidine-2,4(3H)-diones bearing thiazolopyrimidine derivatives and evaluation of their pharmacological activities. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131324] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Synthesis, antimicrobial and antiproliferative activities, molecular docking, and computational studies of novel heterocycles. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2021. [DOI: 10.1007/s13738-021-02251-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Nagaraja O, Bodke YD, Pushpavathi I, Ravi Kumar S. Synthesis, characterization and biological investigations of potentially bioactive heterocyclic compounds containing 4-hydroxy coumarin. Heliyon 2020; 6:e04245. [PMID: 32637685 PMCID: PMC7330081 DOI: 10.1016/j.heliyon.2020.e04245] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 05/19/2020] [Accepted: 06/15/2020] [Indexed: 11/29/2022] Open
Abstract
In this paper, we have reported the synthesis of a series of heterocyclic azo dyes containing 4-hydroxy coumarin by diazo-coupling reaction. The structural aspect of the newly synthesized compounds was accomplished by various physico-chemical techniques like UV-Visible, FT-IR, NMR, and mass spectrometry. The computational calculations and geometrical optimization of the newly synthesized azo dyes were investigated by using Gaussian software with the help of Density functional theory (DFT)/B3LYP method using 6-31G(d,p) basis set at gaseous phase. Also, the quantum chemical parameters were evaluated to understand the structural activity concept of the dyes. The pharmacological efficacy of the azo dyes was investigated by antimicrobial, antitubercular, DNA cleavage and in silico molecular docking studies. All the newly synthesized compounds were able to exhibit significant inhibitory activity against tested microbes. Further, the in silico molecular docking showed effective binding properties of the compounds against RpsA target receptor.
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Affiliation(s)
- O Nagaraja
- Department of PG Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, JnanaSahyadri, Shankaraghatta-577451, Karnataka, India
| | - Yadav D Bodke
- Department of PG Studies and Research in Chemistry, School of Chemical Sciences, Kuvempu University, JnanaSahyadri, Shankaraghatta-577451, Karnataka, India
| | - Itte Pushpavathi
- Department of PG Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, JnanaSahyadri, Shankaraghatta-577451, Karnataka, India
| | - S Ravi Kumar
- Department of PG Studies and Research in Biotechnology, School of Bio Sciences, Kuvempu University, JnanaSahyadri, Shankaraghatta-577451, Karnataka, India
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Çiçek İ, Tunç T, Ogutcu H, Abdurrahmanoglu S, Günel A, Demirel N. Synthesis and Antibacterial Activity of New Chiral Aminoalcohol and Benzimidazole Hybrids. ChemistrySelect 2020. [DOI: 10.1002/slct.202000355] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- İlknur Çiçek
- Department of Chemistry, Faculty of Arts and SciencesAhi Evran University 40100 Kırşehir Turkey
| | - Turgay Tunç
- Department of Chemistry Engineering and Process, Faculty of EngineeringUniversity of Ahi Evran Kırsehir 40100 Turkey
| | - Hatice Ogutcu
- Department of Field Crops, Faculty of AgricultureUniversity Ahi Evran Kırsehir 40100 Turkey
| | - Suzan Abdurrahmanoglu
- Department of ChemistryFaculty of Arts and Science, Marmara University Istanbul 34722 Turkey
| | - Aslıhan Günel
- Department of Chemistry, Faculty of Arts and SciencesAhi Evran University 40100 Kırşehir Turkey
| | - Nadir Demirel
- Department of Chemistry, Faculty of Arts and SciencesAhi Evran University 40100 Kırşehir Turkey
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