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Purohit S, Rana R, Tyagi A, Bahuguna A, Oswal P, Anshika, Kumar A. Organosulphur and organoselenium compounds as ligands for catalytic systems in the Sonogashira coupling. Org Biomol Chem 2024; 22:6215-6245. [PMID: 38873754 DOI: 10.1039/d4ob00552j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2024]
Abstract
Sonogashira coupling is a reaction of aryl/vinyl halides with terminal alkynes. It is used for the synthesis of conjugated enynes. Generally, copper (Cu) is required as a mediator for this reaction. It requires a long reaction time, high catalyst loading, or expensive ligands. Recently, homogeneous, heterogeneous, and nanocatalysts have been developed using organosulphur and organoselenium compounds as building blocks. Preformed complexes of metals with organosulphur and organoselenium ligands are used for homogeneous catalysis. Heterogeneous catalytic systems have also been developed using Cu, Pd, and Ni as metals. The nanocatalytic systems (synthesized using such ligands) include copper selenides and stabilized palladium(0) nanospecies. This article aims to cover the developments in the field of the processes and techniques used so far to generate catalytically relevant organic ligands having sulphur or selenium donor sites, the utility of such ligands in the syntheses of homogeneous, heterogeneous, and nanocatalytic systems, and critical analysis of their application in the catalysis of this coupling reaction. The results of catalysis are analyzed in terms of the effects of the S/Se donor, halogen atom of aryl halide, the effect of the presence/absence of electron-withdrawing or electron-donating groups or substituents on the aromatic ring of haloarenes/substituted phenylacetylenes, as well as the position (ortho or para) of the substitution. Substrate scope is discussed for all the kinds of catalysis. The supremacy of heterogeneous and nanocatalytic systems indicates promising future prospects.
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Affiliation(s)
- Suraj Purohit
- Department of Chemistry, School of Physical Sciences, Doon University, Dehradun, 248001, India.
| | - Ramakshi Rana
- Department of Chemistry, School of Physical Sciences, Doon University, Dehradun, 248001, India.
| | - Anupma Tyagi
- Department of Chemistry, School of Physical Sciences, Doon University, Dehradun, 248001, India.
| | - Anurag Bahuguna
- Department of Chemistry, School of Physical Sciences, Doon University, Dehradun, 248001, India.
| | - Preeti Oswal
- Department of Chemistry, Texas A&M University, College Station, 77842-3012, USA
| | - Anshika
- Department of Chemistry, School of Physical Sciences, Doon University, Dehradun, 248001, India.
| | - Arun Kumar
- Department of Chemistry, School of Physical Sciences, Doon University, Dehradun, 248001, India.
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Zeppilli D, Aldinio-Colbachini A, Ribaudo G, Tubaro C, Dalla Tiezza M, Bortoli M, Zagotto G, Orian L. Antioxidant Chimeric Molecules: Are Chemical Motifs Additive? The Case of a Selenium-Based Ligand. Int J Mol Sci 2023; 24:11797. [PMID: 37511560 PMCID: PMC10380222 DOI: 10.3390/ijms241411797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 07/18/2023] [Accepted: 07/19/2023] [Indexed: 07/30/2023] Open
Abstract
We set up an in silico experiment and designed a chimeric compound integrating molecular features from different efficient ROS (Reactive Oxygen Species) scavengers, with the purpose of investigating potential relationships between molecular structure and antioxidant activity. Furthermore, a selenium centre was inserted due to its known capacity to reduce hydroperoxides, acting as a molecular mimic of glutathione peroxidase; finally, since this organoselenide is a precursor of a N-heterocyclic carbene ligand, its Au(I) carbene complex was designed and examined. A validated protocol based on DFT (Density Functional Theory) was employed to investigate the radical scavenging activity of available sites on the organoselenide precursor ((SMD)-M06-2X/6-311+G(d,p)//M06-2X/6-31G(d)), as well as on the organometallic complex ((SMD)-M06-2X/SDD (Au), 6-311+G(d,p)//ZORA-BLYP-D3(BJ)/TZ2P), considering HAT (Hydrogen Atom Transfer) and RAF (Radical Adduct Formation) regarding five different radicals. The results of this case study suggest that the antioxidant potential of chemical motifs should not be considered as an additive property when designing a chimeric compound, but rather that the relevance of a molecular topology is derived from a chemical motif combined with an opportune chemical space of the molecule. Thus, the direct contributions of single functional groups which are generally thought of as antioxidants per se do not guarantee the efficient radical scavenging potential of a molecular species.
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Affiliation(s)
- Davide Zeppilli
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131 Padova, Italy
| | - Anna Aldinio-Colbachini
- CNRS, Aix Marseille Université, BIP, IMM, IM2B, 31 Chemin J. Aiguier, 13009 Marseille, France
| | - Giovanni Ribaudo
- Dipartimento di Medicina Molecolare e Traslazionale, Università degli Studi di Brescia, Viale Europa 11, 25123 Brescia, Italy
| | - Cristina Tubaro
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131 Padova, Italy
| | - Marco Dalla Tiezza
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131 Padova, Italy
| | - Marco Bortoli
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, 0315 Oslo, Norway
| | - Giuseppe Zagotto
- Dipartimento di Scienze del Farmaco, Università degli Studi di Padova, Via Marzolo 5, 35131 Padova, Italy
| | - Laura Orian
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131 Padova, Italy
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Ivančič A, Košmrlj J, Gazvoda M. Elucidating the reaction mechanism of a palladium-palladium dual catalytic process through kinetic studies of proposed elementary steps. Commun Chem 2023; 6:51. [PMID: 36934172 PMCID: PMC10024772 DOI: 10.1038/s42004-023-00849-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 03/06/2023] [Indexed: 03/19/2023] Open
Abstract
In the synergistic dual catalytic process, the kinetics of the catalytic cycles must be balanced for the successful outcome of the reaction. Therefore, the analysis of the kinetics of the independent catalytic cycles is essential for such reactions, as it enables their relational optimization as well as their design. Here we describe an analysis of the mechanism of a catalytic synergistic bimetallic reaction through the experimental study of a palladium-catalysed cross-coupling of aryl halides with terminal alkynes, an example of a monometallic dual catalytic process. The proposed mechanism of the investigated reaction was disassembled into two palladium catalytic cycles and further into elementary reactions, and each step was studied independently. The described mechanistic analysis allowed us to identify the rate-determining step of the catalytic process by comparing the rates of the elementary reactions under similar reaction conditions, balanced kinetics of the palladium catalytic cycles, and also in which step which reagent enters the catalytic cycle and how.
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Affiliation(s)
- Anže Ivančič
- University of Ljubljana, Faculty of Chemistry and Chemical Technology, Ljubljana, Slovenia
| | - Janez Košmrlj
- University of Ljubljana, Faculty of Chemistry and Chemical Technology, Ljubljana, Slovenia
| | - Martin Gazvoda
- University of Ljubljana, Faculty of Chemistry and Chemical Technology, Ljubljana, Slovenia.
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Nair PP, Jayaraj A, Swamy P CA. Recent Advances in Benzimidazole Based NHC‐Metal Complex Catalysed Cross‐Coupling Reactions**. ChemistrySelect 2022. [DOI: 10.1002/slct.202103517] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Pravya P. Nair
- Main group Organometallics Materials Supramolecular Chemistry and Catalysis lab Department of Chemistry National Institute of Technology Calicut 673601 India
- Institute for Integrated programmes and Research in Basic Sciences (IIRBS) Mahatma Gandhi University Priyadarsini Hills P O Kottayam Kerala 686560 India
| | - Anjitha Jayaraj
- Main group Organometallics Materials Supramolecular Chemistry and Catalysis lab Department of Chemistry National Institute of Technology Calicut 673601 India
| | - Chinna Ayya Swamy P
- Main group Organometallics Materials Supramolecular Chemistry and Catalysis lab Department of Chemistry National Institute of Technology Calicut 673601 India
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Preformed molecular complexes of metals with organoselenium ligands: Syntheses and applications in catalysis. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.213885] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Martek BA, Gazvoda M, Urankar D, Košmrlj J. Designing Homogeneous Copper-Free Sonogashira Reaction through a Prism of Pd-Pd Transmetalation. Org Lett 2020; 22:4938-4943. [PMID: 32379458 PMCID: PMC7341530 DOI: 10.1021/acs.orglett.0c01227] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
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Simultaneous introduction
of two different palladium (pre)catalysts,
one tuned to promote oxidative addition to (hetero)aryl bromide and
another to activate terminal alkyne substrate, leads to productive
Pd–Pd transmetalation, subsequent reductive elimination, and
formation of disubstituted alkyne. This conceptually novel rational
design of copper-free Sonogashira reaction enabled facile identification
of the reaction conditions, suitable for the synthesis of alkyl, aryl,
and heteroaryl substituted alkynes at room temperature with as low
as 0.125 mol % total Pd loading.
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Affiliation(s)
- Bruno A Martek
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, SI-1000 Ljubljana, Slovenia
| | - Martin Gazvoda
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, SI-1000 Ljubljana, Slovenia
| | - Damijana Urankar
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, SI-1000 Ljubljana, Slovenia
| | - Janez Košmrlj
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, SI-1000 Ljubljana, Slovenia
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