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For: Miranda I, Silva R, Santos MAS. Evolution of the genetic code in yeasts. Yeast 2006;23:203-13. [PMID: 16498697 DOI: 10.1002/yea.1350] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
1
Christinaki AC, Kanellopoulos SG, Kortsinoglou AM, Andrikopoulos MΑ, Theelen B, Boekhout T, Kouvelis VN. Mitogenomics and mitochondrial gene phylogeny decipher the evolution of Saccharomycotina yeasts. Genome Biol Evol 2022;14:6586520. [PMID: 35576568 PMCID: PMC9154068 DOI: 10.1093/gbe/evac073] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/12/2022] [Indexed: 11/17/2022]  Open
2
Bezerra AR, Oliveira C, Correia I, Guimarães AR, Sousa G, Carvalho MJ, Moura G, Santos MAS. The role of non-standard translation in Candida albicans pathogenesis. FEMS Yeast Res 2021;21:6280978. [PMID: 34021562 PMCID: PMC8178436 DOI: 10.1093/femsyr/foab032] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 05/20/2021] [Indexed: 12/22/2022]  Open
3
Dantuluri S, Schwer B, Abdullahu L, Damha MJ, Shuman S. Activity and substrate specificity of Candida, Aspergillus, and Coccidioides Tpt1: essential tRNA splicing enzymes and potential anti-fungal targets. RNA (NEW YORK, N.Y.) 2021;27:rna.078660.120. [PMID: 33509912 PMCID: PMC8051265 DOI: 10.1261/rna.078660.120] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Accepted: 01/22/2021] [Indexed: 06/12/2023]
4
Singh T, Yadav SK, Vainstein A, Kumar V. Genome recoding strategies to improve cellular properties: mechanisms and advances. ABIOTECH 2021;2:79-95. [PMID: 34377578 PMCID: PMC7675020 DOI: 10.1007/s42994-020-00030-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 10/07/2020] [Indexed: 11/10/2022]
5
LaBella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Variation and selection on codon usage bias across an entire subphylum. PLoS Genet 2019;15:e1008304. [PMID: 31365533 PMCID: PMC6701816 DOI: 10.1371/journal.pgen.1008304] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 08/20/2019] [Accepted: 07/11/2019] [Indexed: 01/04/2023]  Open
6
Noutahi E, Calderon V, Blanchette M, Lang FB, El-Mabrouk N. CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes. Bioinformatics 2018;33:3331-3339. [PMID: 28655158 DOI: 10.1093/bioinformatics/btx421] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 06/23/2017] [Indexed: 11/13/2022]  Open
7
Mühlhausen S, Schmitt HD, Pan KT, Plessmann U, Urlaub H, Hurst LD, Kollmar M. Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica. Curr Biol 2018;28:2046-2057.e5. [PMID: 29910077 PMCID: PMC6041473 DOI: 10.1016/j.cub.2018.04.085] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2018] [Revised: 04/22/2018] [Accepted: 04/24/2018] [Indexed: 12/24/2022]
8
Grosjean H, Westhof E. An integrated, structure- and energy-based view of the genetic code. Nucleic Acids Res 2016;44:8020-40. [PMID: 27448410 PMCID: PMC5041475 DOI: 10.1093/nar/gkw608] [Citation(s) in RCA: 177] [Impact Index Per Article: 22.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2016] [Revised: 06/11/2016] [Accepted: 06/17/2016] [Indexed: 12/25/2022]  Open
9
Prista C, Michán C, Miranda IM, Ramos J. The halotolerant Debaryomyces hansenii, the Cinderella of non-conventional yeasts. Yeast 2016;33:523-533. [PMID: 27279567 DOI: 10.1002/yea.3177] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Revised: 05/10/2016] [Accepted: 05/10/2016] [Indexed: 11/10/2022]  Open
10
Mühlhausen S, Findeisen P, Plessmann U, Urlaub H, Kollmar M. A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes. Genome Res 2016;26:945-55. [PMID: 27197221 PMCID: PMC4937558 DOI: 10.1101/gr.200931.115] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Accepted: 04/28/2016] [Indexed: 01/12/2023]
11
Bezerra AR, Guimarães AR, Santos MAS. Non-Standard Genetic Codes Define New Concepts for Protein Engineering. Life (Basel) 2015;5:1610-28. [PMID: 26569314 PMCID: PMC4695839 DOI: 10.3390/life5041610] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 10/12/2015] [Accepted: 10/21/2015] [Indexed: 11/16/2022]  Open
12
Evolution of Robustness to Protein Mistranslation by Accelerated Protein Turnover. PLoS Biol 2015;13:e1002291. [PMID: 26544557 PMCID: PMC4636289 DOI: 10.1371/journal.pbio.1002291] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Accepted: 09/30/2015] [Indexed: 11/19/2022]  Open
13
Mukai T, Yamaguchi A, Ohtake K, Takahashi M, Hayashi A, Iraha F, Kira S, Yanagisawa T, Yokoyama S, Hoshi H, Kobayashi T, Sakamoto K. Reassignment of a rare sense codon to a non-canonical amino acid in Escherichia coli. Nucleic Acids Res 2015;43:8111-22. [PMID: 26240376 PMCID: PMC4652775 DOI: 10.1093/nar/gkv787] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Accepted: 07/22/2015] [Indexed: 11/13/2022]  Open
14
Wu B, Buljic A, Hao W. Extensive Horizontal Transfer and Homologous Recombination Generate Highly Chimeric Mitochondrial Genomes in Yeast. Mol Biol Evol 2015;32:2559-70. [PMID: 26018571 DOI: 10.1093/molbev/msv127] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
15
Sárkány Z, Silva A, Pereira PJB, Macedo-Ribeiro S. Ser or Leu: structural snapshots of mistranslation in Candida albicans. Front Mol Biosci 2014;1:27. [PMID: 25988168 PMCID: PMC4428446 DOI: 10.3389/fmolb.2014.00027] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Accepted: 12/04/2014] [Indexed: 11/29/2022]  Open
16
Su Z, Wang Z, López-Giráldez F, Townsend JP. The impact of incorporating molecular evolutionary model into predictions of phylogenetic signal and noise. Front Ecol Evol 2014. [DOI: 10.3389/fevo.2014.00011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
17
Parasexuality and ploidy change in Candida tropicalis. EUKARYOTIC CELL 2013;12:1629-40. [PMID: 24123269 DOI: 10.1128/ec.00128-13] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
18
Ling J, Daoud R, Lajoie MJ, Church GM, Söll D, Lang BF. Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria. Nucleic Acids Res 2013;42:499-508. [PMID: 24049072 PMCID: PMC3874161 DOI: 10.1093/nar/gkt842] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
19
López-Giráldez F, Moeller AH, Townsend JP. Evaluating phylogenetic informativeness as a predictor of phylogenetic signal for metazoan, fungal, and mammalian phylogenomic data sets. BIOMED RESEARCH INTERNATIONAL 2013;2013:621604. [PMID: 23878813 PMCID: PMC3708382 DOI: 10.1155/2013/621604] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Accepted: 06/03/2013] [Indexed: 11/17/2022]
20
Mateus DD, Paredes JA, Español Y, Ribas de Pouplana L, Moura GR, Santos MAS. Molecular reconstruction of a fungal genetic code alteration. RNA Biol 2013;10:969-80. [PMID: 23619021 DOI: 10.4161/rna.24683] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
21
Yadavalli SS, Ibba M. Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code. Nucleic Acids Res 2012;41:1104-12. [PMID: 23222133 PMCID: PMC3553970 DOI: 10.1093/nar/gks1240] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
22
Procházka E, Franko F, Poláková S, Sulo P. A complete sequence of Saccharomyces paradoxus mitochondrial genome that restores the respiration in S. cerevisiae. FEMS Yeast Res 2012;12:819-30. [PMID: 22830625 DOI: 10.1111/j.1567-1364.2012.00833.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2012] [Revised: 06/19/2012] [Accepted: 07/21/2012] [Indexed: 12/01/2022]  Open
23
Eldarov MA, Mardanov AV, Beletsky AV, Dzhavakhiya VV, Ravin NV, Skryabin KG. Complete mitochondrial genome of compactin-producing fungus Penicillium solitum and comparative analysis of Trichocomaceae mitochondrial genomes. FEMS Microbiol Lett 2012;329:9-17. [PMID: 22239643 DOI: 10.1111/j.1574-6968.2012.02497.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2011] [Revised: 12/08/2011] [Accepted: 01/01/2012] [Indexed: 11/30/2022]  Open
24
Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen. Proc Natl Acad Sci U S A 2011;108:14091-6. [PMID: 21825144 DOI: 10.1073/pnas.1102835108] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
25
Eldarov MA, Mardanov AV, Beletsky AV, Ravin NV, Skryabin KG. Complete sequence and analysis of the mitochondrial genome of the methylotrophic yeast Hansenula polymorpha DL-1. FEMS Yeast Res 2011;11:464-72. [PMID: 21545683 DOI: 10.1111/j.1567-1364.2011.00736.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
26
Su D, Lieberman A, Lang BF, Simonovic M, Söll D, Ling J. An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine. Nucleic Acids Res 2011;39:4866-74. [PMID: 21321019 PMCID: PMC3113583 DOI: 10.1093/nar/gkr073] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
27
Reynolds NM, Lazazzera BA, Ibba M. Cellular mechanisms that control mistranslation. Nat Rev Microbiol 2010;8:849-56. [PMID: 21079633 DOI: 10.1038/nrmicro2472] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
28
New insights into the fructosyltransferase activity of Schwanniomyces occidentalis ß-fructofuranosidase, emerging from nonconventional codon usage and directed mutation. Appl Environ Microbiol 2010;76:7491-9. [PMID: 20851958 DOI: 10.1128/aem.01614-10] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
29
Solieri L. Mitochondrial inheritance in budding yeasts: towards an integrated understanding. Trends Microbiol 2010;18:521-30. [PMID: 20832322 DOI: 10.1016/j.tim.2010.08.001] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2010] [Revised: 07/23/2010] [Accepted: 08/04/2010] [Indexed: 01/08/2023]
30
Seaborg DM. Was Wright right? The canonical genetic code is an empirical example of an adaptive peak in nature; deviant genetic codes evolved using adaptive bridges. J Mol Evol 2010;71:87-99. [PMID: 20711776 PMCID: PMC2924497 DOI: 10.1007/s00239-010-9373-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2010] [Accepted: 07/02/2010] [Indexed: 11/30/2022]
31
Townsend JP, Lopez-Giraldez F. Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships. Syst Biol 2010;59:446-57. [DOI: 10.1093/sysbio/syq025] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
32
Procházka E, Poláková S, Piskur J, Sulo P. Mitochondrial genome from the facultative anaerobe and petite-positive yeast Dekkera bruxellensis contains the NADH dehydrogenase subunit genes. FEMS Yeast Res 2010;10:545-57. [PMID: 20528950 DOI: 10.1111/j.1567-1364.2010.00644.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
33
Feketová Z, Masek T, Vopálenský V, Pospísek M. Ambiguous decoding of the CUG codon alters the functionality of the Candida albicans translation initiation factor 4E. FEMS Yeast Res 2010;10:558-69. [PMID: 20491942 DOI: 10.1111/j.1567-1364.2010.00629.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
34
Fournier GP, Gogarten JP. Rooting the Ribosomal Tree of Life. Mol Biol Evol 2010;27:1792-801. [DOI: 10.1093/molbev/msq057] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
35
Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature 2010;462:522-6. [PMID: 19940929 PMCID: PMC2785853 DOI: 10.1038/nature08576] [Citation(s) in RCA: 250] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2009] [Accepted: 10/09/2009] [Indexed: 12/12/2022]
36
Moura GR, Paredes JA, Santos MA. Development of the genetic code: Insights from a fungal codon reassignment. FEBS Lett 2009;584:334-41. [DOI: 10.1016/j.febslet.2009.11.066] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2009] [Revised: 11/17/2009] [Accepted: 11/18/2009] [Indexed: 01/03/2023]
37
Ling J, Reynolds N, Ibba M. Aminoacyl-tRNA synthesis and translational quality control. Annu Rev Microbiol 2009;63:61-78. [PMID: 19379069 DOI: 10.1146/annurev.micro.091208.073210] [Citation(s) in RCA: 284] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
38
Jung PP, Schacherer J, Souciet JL, Potier S, Wincker P, de Montigny J. The complete mitochondrial genome of the yeastPichia sorbitophila. FEMS Yeast Res 2009;9:903-10. [DOI: 10.1111/j.1567-1364.2009.00540.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
39
Jiménez-Montaño MA. The fourfold way of the genetic code. Biosystems 2009;98:105-14. [PMID: 19643160 DOI: 10.1016/j.biosystems.2009.07.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2009] [Revised: 07/14/2009] [Accepted: 07/16/2009] [Indexed: 11/29/2022]
40
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E. Comparative genomics of protoploid Saccharomycetaceae. Genome Res 2009;19:1696-709. [PMID: 19525356 DOI: 10.1101/gr.091546.109] [Citation(s) in RCA: 180] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
41
Otto W, Stadler PF, López-Giraldéz F, Townsend JP, Lynch VJ, Wagner GP. Measuring transcription factor-binding site turnover: a maximum likelihood approach using phylogenies. Genome Biol Evol 2009;1:85-98. [PMID: 20333180 PMCID: PMC2817405 DOI: 10.1093/gbe/evp010] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/15/2009] [Indexed: 12/30/2022]  Open
42
Dostál J, Brynda J, Hrusková-Heidingsfeldová O, Sieglová I, Pichová I, Rezácová P. The crystal structure of the secreted aspartic protease 1 from Candida parapsilosis in complex with pepstatin A. J Struct Biol 2009;167:145-52. [PMID: 19401235 DOI: 10.1016/j.jsb.2009.04.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2009] [Revised: 03/18/2009] [Accepted: 04/17/2009] [Indexed: 01/12/2023]
43
Silva RM, Duarte ICN, Paredes JA, Lima-Costa T, Perrot M, Boucherie H, Goodfellow BJ, Gomes AC, Mateus DD, Moura GR, Santos MAS. The yeast PNC1 longevity gene is up-regulated by mRNA mistranslation. PLoS One 2009;4:e5212. [PMID: 19381334 PMCID: PMC2667667 DOI: 10.1371/journal.pone.0005212] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2008] [Accepted: 03/16/2009] [Indexed: 11/18/2022]  Open
44
Atkins JF, Björk GR. A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment. Microbiol Mol Biol Rev 2009;73:178-210. [PMID: 19258537 PMCID: PMC2650885 DOI: 10.1128/mmbr.00010-08] [Citation(s) in RCA: 111] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
45
Krauke Y, Sychrova H. Functional comparison of plasma-membrane Na+/H+ antiporters from two pathogenic Candida species. BMC Microbiol 2008;8:80. [PMID: 18492255 PMCID: PMC2424070 DOI: 10.1186/1471-2180-8-80] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2007] [Accepted: 05/20/2008] [Indexed: 01/04/2023]  Open
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Lekomtsev SA. Nonstandard genetic codes and translation termination. Mol Biol 2007. [DOI: 10.1134/s0026893307060027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Pelletier B, Mercier A, Durand M, Peter C, Jbel M, Beaudoin J, Labbé S. Expression of Candida albicans Sfu1 in fission yeast complements the loss of the iron-regulatory transcription factor Fep1 and requires Tup co-repressors. Yeast 2007;24:883-900. [PMID: 17724773 DOI: 10.1002/yea.1539] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
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Silva RM, Paredes JA, Moura GR, Manadas B, Lima-Costa T, Rocha R, Miranda I, Gomes AC, Koerkamp MJG, Perrot M, Holstege FCP, Boucherie H, Santos MAS. Critical roles for a genetic code alteration in the evolution of the genus Candida. EMBO J 2007;26:4555-65. [PMID: 17932489 PMCID: PMC2063480 DOI: 10.1038/sj.emboj.7601876] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2007] [Accepted: 09/10/2007] [Indexed: 11/09/2022]  Open
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Miranda I, Rocha R, Santos MC, Mateus DD, Moura GR, Carreto L, Santos MAS. A genetic code alteration is a phenotype diversity generator in the human pathogen Candida albicans. PLoS One 2007;2:e996. [PMID: 17912373 PMCID: PMC1991585 DOI: 10.1371/journal.pone.0000996] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2007] [Accepted: 09/18/2007] [Indexed: 11/19/2022]  Open
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Bacher JM, Waas WF, Metzgar D, de Crécy-Lagard V, Schimmel P. Genetic code ambiguity confers a selective advantage on Acinetobacter baylyi. J Bacteriol 2007;189:6494-6. [PMID: 17616603 PMCID: PMC1951902 DOI: 10.1128/jb.00622-07] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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