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Shumyantseva VV, Koroleva PI, Bulko TV, Shkel TV, Gilep AA, Veselovsky AV. Approaches for increasing the electrocatalitic efficiency of cytochrome P450 3A4. Bioelectrochemistry 2022; 149:108277. [DOI: 10.1016/j.bioelechem.2022.108277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 09/22/2022] [Accepted: 09/22/2022] [Indexed: 11/25/2022]
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Zhang C, Lu M, Lin L, Huang Z, Zhang R, Wu X, Chen Y. Riboflavin Is Directly Involved in N-Dealkylation Catalyzed by Bacterial Cytochrome P450 Monooxygenases. Chembiochem 2020; 21:2297-2305. [PMID: 32243060 DOI: 10.1002/cbic.202000071] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 04/01/2020] [Indexed: 11/09/2022]
Abstract
Like a vast number of enzymes in nature, bacterial cytochrome P450 monooxygenases require an activated form of flavin as a cofactor for catalytic activity. Riboflavin is the precursor of FAD and FMN that serves as indispensable cofactor for flavoenzymes. In contrast to previous notions, herein we describe the identification of an electron-transfer process that is directly mediated by riboflavin for N-dealkylation by bacterial P450 monooxygenases. The electron relay from NADPH to riboflavin and then via activated oxygen to heme was proposed based on a combination of X-ray crystallography, molecular modeling and molecular dynamics simulation, site-directed mutagenesis and biochemical analysis of representative bacterial P450 monooxygenases. This study provides new insights into the electron transfer mechanism in bacterial P450 enzyme catalysis and likely in yeasts, fungi, plants and mammals.
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Affiliation(s)
- Chengchang Zhang
- Laboratory of Chemical Biology and State Key Laboratory of Natural Medicines, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu Province, 211198, P. R. China
| | - Meiling Lu
- Laboratory of Chemical Biology and State Key Laboratory of Natural Medicines, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu Province, 211198, P. R. China
| | - Lin Lin
- National Center for Protein Science and Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, 333 Haike Road, Shanghai, 201210, P. R. China
| | - Zhangjian Huang
- Laboratory of Chemical Biology and State Key Laboratory of Natural Medicines, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu Province, 211198, P. R. China
| | - Rongguang Zhang
- National Center for Protein Science and Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, 333 Haike Road, Shanghai, 201210, P. R. China
| | - Xuri Wu
- Laboratory of Chemical Biology and State Key Laboratory of Natural Medicines, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu Province, 211198, P. R. China
| | - Yijun Chen
- Laboratory of Chemical Biology and State Key Laboratory of Natural Medicines, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu Province, 211198, P. R. China
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Ducharme J, Auclair K. Use of bioconjugation with cytochrome P450 enzymes. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2017. [PMID: 28625736 DOI: 10.1016/j.bbapap.2017.06.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Bioconjugation, defined as chemical modification of biomolecules, is widely employed in biological and biophysical studies. It can expand functional diversity and enable applications ranging from biocatalysis, biosensing and even therapy. This review summarizes how chemical modifications of cytochrome P450 enzymes (P450s or CYPs) have contributed to improving our understanding of these enzymes. Genetic modifications of P450s have also proven very useful but are not covered in this review. Bioconjugation has served to gain structural information and investigate the mechanism of P450s via photoaffinity labeling, mechanism-based inhibition (MBI) and fluorescence studies. P450 surface acetylation and protein cross-linking have contributed to the investigation of protein complexes formation involving P450 and its redox partner or other P450 enzymes. Finally, covalent immobilization on polymer surfaces or electrodes has benefited the areas of biocatalysis and biosensor design. This article is part of a Special Issue entitled: Cytochrome P450 biodiversity and biotechnology, edited by Erika Plettner, Gianfranco Gilardi, Luet Wong, Vlada Urlacher, Jared Goldstone.
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Affiliation(s)
- Julie Ducharme
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada
| | - Karine Auclair
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada.
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Girhard M, Kunigk E, Tihovsky S, Shumyantseva VV, Urlacher VB. Light-driven biocatalysis with cytochrome P450 peroxygenases. Biotechnol Appl Biochem 2013; 60:111-8. [DOI: 10.1002/bab.1063] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2012] [Accepted: 11/19/2012] [Indexed: 11/07/2022]
Affiliation(s)
- Marco Girhard
- Institute of Biochemistry; Heinrich-Heine University Düsseldorf; Düsseldorf; Germany
| | - Elmar Kunigk
- Institute of Biochemistry; Heinrich-Heine University Düsseldorf; Düsseldorf; Germany
| | - Svetlana Tihovsky
- Institute of Technical Biochemistry; Universität Stuttgart; Stuttgart; Germany
| | | | - Vlada B. Urlacher
- Institute of Biochemistry; Heinrich-Heine University Düsseldorf; Düsseldorf; Germany
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Shumyantseva VV, Shich EV, Machova AA, Bulko TV, Kukes VG, Sizova OS, Ramenskaya GV, Usanov SA, Archakov AI. The influence of B-group vitamins on monooxygenase activity of cytochrome P450 3A4: Pharmacokinetics and electro analysis of the catalytic properties. BIOCHEMISTRY (MOSCOW) SUPPLEMENT SERIES B: BIOMEDICAL CHEMISTRY 2012. [DOI: 10.1134/s1990750812010143] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Shumiantseva VV, Shikh EV, Makhova AA, Bylko TV, Kukes VG, Sizova OS, Ramenskaia GV, Usanov SA, Archakov AI. [The influence of vitamin B group on monooxygenase activity of cytochrome P450 3A4: pharmacokinetics and electro analysis of catalytic properties]. BIOMEDIT︠S︡INSKAI︠A︡ KHIMII︠A︡ 2011; 57:343-54. [PMID: 21863748 DOI: 10.18097/pbmc20115703343] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
It was shown that vitamin B group permit to shorten the longitude of diclofenak therapy and to reduce the daytime dose of this drug. All three schemes of diclofenac treatment - only diclofenac, diclofenac plus 2 tablets of Gitagamp (mixture of vitamin B group), and diclofenac plus 4 tablets of Gitagamp--gave maximum value of diclofenal in blood through 1 hour after treatment. In the case of diclofenak treatment without vitamins Cmax corresponds to 1137.2 +/- 82.4 ng/ml, with 2 tablets of Gitagamp--Cmax 1326.7 +/- 122.5 ng/ml, and with 4 tablets--Cmax 2200.4 +/- 111.3 ng/ml. Positive influence of vitamin B group on the decrease of pain syndrome was shown. Pharmacodynamics and pharmacokinetics data were confirmed in electrochemical experiments with cytochrome P450 3A4. For enzyme immobilization screen printed graphite electrodes modified with gold nanoparticles and synthetic membrane-like compound didodecyldimethylammonium bromide (DDAB/Au) were used. Electrochemical analysis reviled the influence of vitamin B group on metabolism of non steroid anti inflammation drug diclofenac catalyzed by cytochrome P450 3A4. Riboflavin was the most effective inhibitor of diclofenac hydroxylation by cytochrome P450 3A4 as was compared at 300 M concentration of vitamin B group (B1, B2, B6). These data confirmed the opportunity of pharmacokinetic parameters regulation and the level of pharmacodynamic effects by the influence of vitamin B group on the catalytic activity of cytochrome P450 3A4.
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Electroanalysis of Cytochrome P450 3A4 Catalytic Properties with Nanostructured Electrodes: The Influence of Vitamin B Group on Diclofenac Metabolism. BIONANOSCIENCE 2011. [DOI: 10.1007/s12668-011-0007-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Expression, purification and characterization of two Clostridium acetobutylicum flavodoxins: Potential electron transfer partners for CYP152A2. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2011; 1814:257-64. [DOI: 10.1016/j.bbapap.2010.06.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2010] [Revised: 06/10/2010] [Accepted: 06/17/2010] [Indexed: 11/18/2022]
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Hollmann F, Schmid A. Electrochemical Regeneration of Oxidoreductases for Cell-free Biocatalytic Redox Reactions. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.1080/10242420410001692778] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Hlavica P. Assembly of non-natural electron transfer conduits in the cytochrome P450 system: A critical assessment and update of artificial redox constructs amenable to exploitation in biotechnological areas. Biotechnol Adv 2009; 27:103-21. [DOI: 10.1016/j.biotechadv.2008.10.001] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2008] [Revised: 09/29/2008] [Accepted: 10/04/2008] [Indexed: 10/21/2022]
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Rudakov YO, Shumyantseva VV, Bulko TV, Suprun EV, Kuznetsova GP, Samenkova NF, Archakov AI. Stoichiometry of electrocatalytic cycle of cytochrome P450 2B4. J Inorg Biochem 2008; 102:2020-5. [DOI: 10.1016/j.jinorgbio.2008.08.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2008] [Revised: 08/07/2008] [Accepted: 08/18/2008] [Indexed: 10/21/2022]
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Shumyantseva VV, Bulko TV, Archakov AI. Regulation of cytochrome P450 activity by physicochemical methods. RUSSIAN CHEMICAL REVIEWS 2007. [DOI: 10.1070/rc1999v068n10abeh000501] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Chefson A, Auclair K. Progress towards the easier use of P450 enzymes. MOLECULAR BIOSYSTEMS 2006; 2:462-9. [PMID: 17216026 DOI: 10.1039/b607001a] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cytochrome P450 enzymes (P450s or CYPs) form a large family of heme proteins involved in drug metabolism and in the biosynthesis of steroids, lipids, vitamins and natural products. Their remarkable ability to catalyze the insertion of oxygen into non-activated C-H bonds has attracted the interest of chemists for several decades. Very few chemical methods exist that directly hydroxylate aliphatic or aromatic C-H bonds, and most of them are not selective or of limited scope. Biocatalysts such as P450s represent a promising alternative: however, their applications have been limited by substrate specificity, low activity, poor stability and the need for cofactors. This review covers the attempts to overcome these limitations using approaches such as mutagenesis, chemical modifications, conditions engineering and immobilization.
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Affiliation(s)
- Amandine Chefson
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montréal, Québec, Canada H3A 2K6
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Shumyantseva VV, Bulko TV, Archakov AI. Electrochemical reduction of cytochrome P450 as an approach to the construction of biosensors and bioreactors. J Inorg Biochem 2005; 99:1051-63. [PMID: 15833328 DOI: 10.1016/j.jinorgbio.2005.01.014] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2004] [Revised: 01/24/2005] [Accepted: 01/28/2005] [Indexed: 11/25/2022]
Abstract
In the present review an attempt was made to present an up-to-date amount of the data on electrochemical reduction of the hemoprotein cytochrome P450. The concept and potentialities of enzyme electrodes--transducers--as the main element for construction of electrochemical biosensors were discussed. Different types of electrodes for bioelectrochemistry were analysed. New nanotechnological approaches to cytochrome P450 immobilisation were reported. It was shown that nanobiotechnology in electrochemistry has potential application in manufacturing biosensors and bioreactors for clinical medicine and pharmacology.
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Affiliation(s)
- Victoria V Shumyantseva
- Laboratory of Microsomal Oxidation, Institute of Biomedical Chemistry, Russian Academy of Medical Sciences, Pogodinskaya Str., 10, Moscow 119121, Russia.
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Chapter 10 Non-affinity sensing technology: the exploitation of biocatalytic events for environmental analysis. BIOSENSORS AND MODERN BIOSPECIFIC ANALYTICAL TECHNIQUES 2005. [DOI: 10.1016/s0166-526x(05)44010-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Shumyantseva VV, Bulko TV, Petushkova NA, Samenkova NF, Kuznetsova GP, Archakov AI. Fluorescent assay for riboflavin binding to cytochrome P450 2B4. J Inorg Biochem 2004; 98:365-70. [PMID: 14729317 DOI: 10.1016/j.jinorgbio.2003.10.024] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The interactions between the hemoprotein cytochrome P450 2B4 (CYP 2B4) and riboflavin - a low molecular weight component of the flavoprotein NADPH-dependent cytochrome P450 reductase - were investigated by fluorescence spectroscopy. Riboflavin fluorescence quenching by cytochrome P450 2B4 was used to probe the ligand-enzyme binding (lambda(ex)=385 nm, lambda(em)=520 nm). Fluorescence titration experiments showed formation of a complex between cytochrome P450 2B4 and riboflavin with an apparent dissociation constant value, K(d)=8.8+/-1 microM. The fluorescence intensity of riboflavin was decreased with increasing the cytochrome P450 2B4 concentration, indicating the transfer of resonance excitation energy from riboflavin (energy donor) to the cytochrome P450 2B4 heme (energy acceptor). The data obtained are suggestive of the existence of riboflavin binding site(s) on the hemeprotein molecule.
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Affiliation(s)
- Victoria V Shumyantseva
- Institute of Biomedical Chemistry, Russian Academy of Medical Sciences, Pogodinskaya st. 10, Moscow 119992, Russia.
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Shumyantseva VV, Bulko TV, Schmid RD, Archakov AI. Photochemical properties of a riboflavins/cytochrome P450 2B4 complex. Biosens Bioelectron 2002; 17:233-8. [PMID: 11839477 DOI: 10.1016/s0956-5663(01)00181-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
The present study demonstrates the possible use of a non-covalent complex of riboflavins with cytochrome P450 2B4 (artificial flavocytochrome P450 2B4) for photo-induced intermolecular electron transfer between the isoalloxazine cycle of flavins and the ferric heme group of cytochrome P450 2B4. Riboflavin was used as a light-induced electron donor for the transfer of electrons to cytochrome P450. The quantitative measurement of the photocurrent, generated by photoreduction of non-covalent flavocytochrome P450 2B4, was carried out. In the presence of typical substrates for cytochrome P450 2B4 the decrease of cathodic photocurrent occurred, generated not only by riboflavin itself but also by a riboflavin/cytochrome P450 complex. It was demonstrated that flavocytochromes might serve as molecular amplifiers of a photocurrent, generated upon flavins' reduction. Introduction of flavin residues into the cytochrome P450 molecule transformed this haemoprotein into a photoreceptor and a photodiode and, in addition, into a photosensitive and photo-activated enzyme.
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Shumyantseva VV, Bulko TV, Usanov SA, Schmid RD, Nicolini C, Archakov AI. Construction and characterization of bioelectrocatalytic sensors based on cytochromes P450. J Inorg Biochem 2001; 87:185-90. [PMID: 11744055 DOI: 10.1016/s0162-0134(01)00329-4] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Semisynthetic flavocytochromes RfP450 1A2, RfP450 2B4 and RfP450scc--molecular conjugates of protein with riboflavin--could be reduced on rhodium-graphite screen-printed thick film electrodes as was confirmed by cyclic voltammograms of immobilized enzymes. Amperometric enzyme electrodes for direct measurement of organic pollutants were developed. The efficiency of controlled potential electrolysis for the reduction of flavocytochromes P450 was comparable with traditional reduction by pyridine nucleotides. The rate constants for substrates conversion obtained by electrochemical methods were close to those obtained using NAD(P)H as an electron source.
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Affiliation(s)
- V V Shumyantseva
- Institute of Biomedical Chemistry, Pogodinskaya St. 10, 119992, Moscow, Russia.
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Shumyantseva VV, Bulko TV, Bachmann TT, Bilitewski U, Schmid RD, Archakov AI. Electrochemical reduction of flavocytochromes 2B4 and 1A2 and their catalytic activity. Arch Biochem Biophys 2000; 377:43-8. [PMID: 10775439 DOI: 10.1006/abbi.2000.1739] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The present study shows that cytochromes P450 2B4 and 1A2 with a covalently attached riboflavin (semisynthetic flavocytochromes RfP450 2B4 and RfP450 1A2) can be reduced electrochemically on rhodium-graphite electrodes at a potential of -500 mV (vs Ag/AgCl). In the presence of substrates such as aminopyrine, aniline, 7-ethoxyresorufin, and 7-pentoxyresorufin, N-demethylation, p-hydroxylation, and O-dealkylation reactions proceeded, as was confirmed by product analysis. Rates of electrocatalytically driven reactions are comparable to those obtained using NAD(P)H as the source of reducing equivalents. These results suggest the practicality of developing flavocytochrome P450s as catalysts for oxidation reactions with different classes of organic substrates.
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Affiliation(s)
- V V Shumyantseva
- Institute of Biomedical Chemistry, Pogodinskaya st. 10, Moscow, 119832, Russia.
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Shumyantseva VV, Bulko TV, Alexandrova SA, Sokolov NN, Schmid RD, Bachmann T, Archakov AI. N-terminal truncated cytochrome P450 2B4: catalytic activities and reduction with alternative electron sources. Biochem Biophys Res Commun 1999; 263:678-80. [PMID: 10512738 DOI: 10.1006/bbrc.1999.1417] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
It was shown that riboflavin binds to the truncated cytochrome P450 2B4 and forms a complex with the K(d) = 26 microM. Noncovalent complex of truncated (Delta2-27) cytochrome P450 2B4 with riboflavin was essential for electron transfer realization and catalyzed the NADH-dependent and hydrogen peroxide-supported monooxygenase reactions of aminopyrine N-demethylation and aniline p-hydroxylation. Flavocytochrome molecular maquette was capable of supporting photoactivatable electron transfer and could be photoreduced and electroreduced quantitatively in the absence of pyridine nucleotides.
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Affiliation(s)
- V V Shumyantseva
- Institute of Biomedical Chemistry, Pogodinskaya Street 10, Moscow, 119832, Russia.
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