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For: Garat B, Musto H. Trends of amino acid usage in the proteins from the unicellular parasite Giardia lamblia. Biochem Biophys Res Commun 2000;279:996-1000. [PMID: 11162464 DOI: 10.1006/bbrc.2000.4051] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Lamolle G, Iriarte A, Simón D, Musto H. Amino acid usage and protein expression levels in the flatworm Schistosoma mansoni. Mol Biochem Parasitol 2023;255:111581. [PMID: 37478919 DOI: 10.1016/j.molbiopara.2023.111581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 07/10/2023] [Accepted: 07/17/2023] [Indexed: 07/23/2023]
2
Lamolle G, Simón D, Iriarte A, Musto H. Main Factors Shaping Amino Acid Usage Across Evolution. J Mol Evol 2023:10.1007/s00239-023-10120-5. [PMID: 37264211 DOI: 10.1007/s00239-023-10120-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 05/17/2023] [Indexed: 06/03/2023]
3
Füssy Z, Vinopalová M, Treitli SC, Pánek T, Smejkalová P, Čepička I, Doležal P, Hampl V. Retortamonads from vertebrate hosts share features of anaerobic metabolism and pre-adaptations to parasitism with diplomonads. Parasitol Int 2021;82:102308. [PMID: 33626397 PMCID: PMC7985675 DOI: 10.1016/j.parint.2021.102308] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 01/26/2021] [Accepted: 02/11/2021] [Indexed: 12/17/2022]
4
Survival of the cheapest: how proteome cost minimization drives evolution. Q Rev Biophys 2020;53:e7. [PMID: 32624048 DOI: 10.1017/s0033583520000037] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
5
Dohra H, Fujishima M, Suzuki H. Analysis of amino acid and codon usage in Paramecium bursaria. FEBS Lett 2015;589:3113-8. [PMID: 26341535 DOI: 10.1016/j.febslet.2015.08.033] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Revised: 08/20/2015] [Accepted: 08/21/2015] [Indexed: 01/28/2023]
6
Kepp KP, Dasmeh P. A model of proteostatic energy cost and its use in analysis of proteome trends and sequence evolution. PLoS One 2014;9:e90504. [PMID: 24587382 PMCID: PMC3938754 DOI: 10.1371/journal.pone.0090504] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Accepted: 02/03/2014] [Indexed: 12/25/2022]  Open
7
Iriarte A, Baraibar JD, Diana L, Castro-Sowinski S, Romero H, Musto H. Trends in amino acid usage across the class Mollicutes. J Biomol Struct Dyn 2014;32:65-74. [DOI: 10.1080/07391102.2012.748636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
8
Raiford DW, Heizer EM, Miller RV, Doom TE, Raymer ML, Krane DE. Metabolic and translational efficiency in microbial organisms. J Mol Evol 2012;74:206-16. [PMID: 22538926 DOI: 10.1007/s00239-012-9500-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2011] [Accepted: 04/05/2012] [Indexed: 11/25/2022]
9
Synonymous codon usage analysis of thirty two mycobacteriophage genomes. Adv Bioinformatics 2010:316936. [PMID: 20150956 PMCID: PMC2817497 DOI: 10.1155/2009/316936] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2009] [Accepted: 10/27/2009] [Indexed: 11/17/2022]  Open
10
Analysis of synonymous codon usage in the UL24 gene of duck enteritis virus. Virus Genes 2008;38:96-103. [PMID: 18958612 DOI: 10.1007/s11262-008-0295-0] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2008] [Accepted: 10/09/2008] [Indexed: 10/21/2022]
11
Sabbía V, Piovani R, Naya H, Rodríguez-Maseda H, Romero H, Musto H. Trends of amino acid usage in the proteins from the human genome. J Biomol Struct Dyn 2007;25:55-9. [PMID: 17676938 DOI: 10.1080/07391102.2007.10507155] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
12
Swire J. Selection on synthesis cost affects interprotein amino acid usage in all three domains of life. J Mol Evol 2007;64:558-71. [PMID: 17476453 DOI: 10.1007/s00239-006-0206-8] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2006] [Accepted: 01/02/2007] [Indexed: 11/27/2022]
13
Sau K, Gupta SK, Sau S, Mandal SC, Ghosh TC. Factors influencing synonymous codon and amino acid usage biases in Mimivirus. Biosystems 2006;85:107-13. [PMID: 16442213 DOI: 10.1016/j.biosystems.2005.12.004] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2005] [Revised: 12/05/2005] [Accepted: 12/17/2005] [Indexed: 10/25/2022]
14
Banerjee T, Ghosh TC. Gene expression level shapes the amino acid usages in Prochlorococcus marinus MED4. J Biomol Struct Dyn 2006;23:547-54. [PMID: 16494504 DOI: 10.1080/07391102.2006.10507079] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
15
Das S, Pan A, Paul S, Dutta C. Comparative Analyses of Codon and Amino Acid Usage in Symbiotic Island and Core Genome in Nitrogen-Fixing Symbiotic BacteriumBradyrhizobium japonicum. J Biomol Struct Dyn 2005;23:221-32. [PMID: 16060695 DOI: 10.1080/07391102.2005.10507061] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
16
Naya H, Gianola D, Romero H, Urioste JI, Musto H. Inferring Parameters Shaping Amino Acid Usage in Prokaryotic Genomes via Bayesian MCMC Methods. Mol Biol Evol 2005;23:203-11. [PMID: 16162860 DOI: 10.1093/molbev/msj023] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
17
Sau K, Sau S, Mandal SC, Ghosh TC. Factors influencing the synonymous codon and amino acid usage bias in AT-rich Pseudomonas aeruginosa phage PhiKZ. Acta Biochim Biophys Sin (Shanghai) 2005;37:625-33. [PMID: 16143818 PMCID: PMC7109957 DOI: 10.1111/j.1745-7270.2005.00089.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
18
Chanda I, Pan A, Dutta C. Proteome composition in Plasmodium falciparum: higher usage of GC-rich nonsynonymous codons in highly expressed genes. J Mol Evol 2005;61:513-23. [PMID: 16044241 DOI: 10.1007/s00239-005-0023-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2005] [Accepted: 04/19/2005] [Indexed: 10/25/2022]
19
Naya H, Zavala A, Romero H, Rodríguez-Maseda H, Musto H. Correspondence analysis of amino acid usage within the family Bacillaceae. Biochem Biophys Res Commun 2005;325:1252-7. [PMID: 15555561 DOI: 10.1016/j.bbrc.2004.10.170] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2004] [Indexed: 11/30/2022]
20
Akashi H. Translational selection and yeast proteome evolution. Genetics 2003;164:1291-303. [PMID: 12930740 PMCID: PMC1462678 DOI: 10.1093/genetics/164.4.1291] [Citation(s) in RCA: 183] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
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