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Feng X, Rahman MM, Hu Q, Wang B, Karim H, Guzmán C, Harwood W, Xu Q, Zhang Y, Tang H, Jiang Y, Qi P, Deng M, Ma J, Lan J, Wang J, Chen G, Lan X, Wei Y, Zheng Y, Jiang Q. HvGBSSI mutation at the splicing receptor site affected RNA splicing and decreased amylose content in barley. FRONTIERS IN PLANT SCIENCE 2022; 13:1003333. [PMID: 36212333 PMCID: PMC9538149 DOI: 10.3389/fpls.2022.1003333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 08/24/2022] [Indexed: 06/16/2023]
Abstract
Granule-bound starch synthase I (HvGBSSI) is encoded by the barley waxy (Wx-1) gene and is the sole enzyme in the synthesis of amylose. Here, a Wx-1 mutant was identified from an ethyl methane sulfonate (EMS)-mutagenized barley population. There were two single-base mutations G1086A and A2424G in Wx-1 in the mutant (M2-1105). The G1086A mutation is located at the 3' splicing receptor (AG) site of the fourth intron, resulting in an abnormal RNA splicing. The A2424G mutation was a synonymous mutation in the ninth intron. The pre-mRNA of Wx-1 was incorrectly spliced and transcribed into two abnormal transcripts. The type I transcript had a 6 bp deletion in the 5' of fifth exon, leading to a translated HvGBSSI protein lacking two amino acids with a decreased starch-binding capacity. In the type II transcript, the fourth intron was incorrectly cleaved and retained, resulting in the premature termination of the barley Wx-1 gene. The mutations in the Wx-1 decreased the enzymatic activity of the HvGBSSI enzyme and resulted in a decreased level in amylose content. This work sheds light on a new Wx-1 gene inaction mechanism.
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Affiliation(s)
- Xiuqin Feng
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Md. Mostafijur Rahman
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Qian Hu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Bang Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Hassan Karim
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Carlos Guzmán
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Universidad de Córdoba, Cordoba, Spain
| | - Wendy Harwood
- John Innes Center, Norwich Research Park, Norwich, United Kingdom
| | - Qiang Xu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yazhou Zhang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Huaping Tang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yunfeng Jiang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Pengfei Qi
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Mei Deng
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Jian Ma
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Jingyu Lan
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Jirui Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Guoyue Chen
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xiujin Lan
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yuming Wei
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Youliang Zheng
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Qiantao Jiang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, SichuanChina
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
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Li Y, Karim H, Wang B, Guzmán C, Harwood W, Xu Q, Zhang Y, Tang H, Jiang Y, Qi P, Deng M, Ma J, Lan J, Wang J, Chen G, Lan X, Wei Y, Zheng Y, Jiang Q. Regulation of Amylose Content by Single Mutations at an Active Site in the Wx-B1 Gene in a Tetraploid Wheat Mutant. Int J Mol Sci 2022; 23:ijms23158432. [PMID: 35955567 PMCID: PMC9368913 DOI: 10.3390/ijms23158432] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 07/21/2022] [Accepted: 07/26/2022] [Indexed: 01/15/2023] Open
Abstract
The granule-bound starch synthase I (GBSSI) encoded by the waxy gene is responsible for amylose synthesis in the endosperm of wheat grains. In the present study, a novel Wx-B1 null mutant line, M3-415, was identified from an ethyl methanesulfonate-mutagenized population of Chinese tetraploid wheat landrace Jianyangailanmai (LM47). The gene sequence indicated that the mutated Wx-B1 encoded a complete protein; this protein was incompatible with the protein profile obtained using sodium dodecyl sulfate–polyacrylamide gel electrophoresis, which showed the lack of Wx-B1 protein in the mutant line. The prediction of the protein structure showed an amino acid substitution (G470D) at the edge of the ADPG binding pocket, which might affect the binding of Wx-B1 to starch granules. Site-directed mutagenesis was further performed to artificially change the amino acid at the sequence position 469 from alanine (A) to threonine (T) (A469T) downstream of the mutated site in M3-415. Our results indicated that a single amino acid mutation in Wx-B1 reduces its activity by impairing its starch-binding capacity. The present study is the first to report the novel mechanism underlying Wx-1 deletion in wheat; moreover, it provided new insights into the inactivation of the waxy gene and revealed that fine regulation of wheat amylose content is possible by modifying the GBSSI activity.
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Affiliation(s)
- Yulong Li
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Hassan Karim
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Bang Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Carlos Guzmán
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, 14071 Cordoba, Spain;
| | - Wendy Harwood
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK;
| | - Qiang Xu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Yazhou Zhang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Huaping Tang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Yunfeng Jiang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Pengfei Qi
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Mei Deng
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Jian Ma
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Jingyu Lan
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Jirui Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Guoyue Chen
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Xiujin Lan
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Yuming Wei
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Youliang Zheng
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiantao Jiang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (Y.L.); (H.K.); (B.W.); (Q.X.); (Y.Z.); (H.T.); (Y.J.); (P.Q.); (M.D.); (J.M.); (J.L.); (J.W.); (G.C.); (X.L.); (Y.W.); (Y.Z.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
- Correspondence: ; Tel.: +86-28-8629-0958; Fax: +86-28-8265-0350
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Alsamadany H, Ahmed Z, Alzahrani Y. Determinants of resistant starch accumulation in wheat endosperm. Saudi J Biol Sci 2022; 29:103310. [PMID: 36313385 PMCID: PMC9614566 DOI: 10.1016/j.sjbs.2022.103310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Revised: 03/24/2022] [Accepted: 05/15/2022] [Indexed: 11/27/2022] Open
Abstract
A part of the big three cereal crops in the world, wheat has become a major constituent of the everyday food chain and is grown at a massive scale to meet global demands. This makes it an important crop from an economic as well as food security perspective. Selection of high-quality cultivars and consistent trait enhancement for such cultivars is crucial, and in light of new challenges from climate change, this has become an absolute necessity of time. In this regard, we conducted a detailed qualitative and quantitative trait analysis for multiple commercially viable varieties of wheat, and corresponding results were subjected to a series of critical statistical analyses. Final results have shown that five cultivars including Uqaab-2000, Faisalabad- 85, Anmol-19, NARC-2009, and Pirsabak-2004 depicts higher levels of various essential qualitative and quantitative traits (including Starch content, grain weight, RS content, Protein content, etc.) and are most viable varieties for further growth and trait enhancements to meet regional and global food challenges.
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He M, Hu J, Wu Y, Ouyang J. Determination of starch and amylose contents in various cereals using common model of near-infrared reflectance spectroscopy. INTERNATIONAL FOOD RESEARCH JOURNAL 2021. [DOI: 10.47836/ifrj.28.5.12] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Near-infrared reflectance spectroscopy (NIRS) was used to determine the total starch and amylose contents in various kinds of cereals namely wheat, waxy rice, non-waxy rice, millet, sorghum, waxy maize, buckwheat, barley, and hulless oat. The partial least-squares (PLS) analysis and principal component regression (PCR) were used to establish the calibration models. PLS model achieved a better effect than PCR at 1100 - 2500 nm, and the coefficient of determination (R2) of the calibration and prediction sets were both higher than 0.9 after the best pre-treatment method, first derivative plus Savitzky-Golay. Additionally, the root mean square error (RMSE) was lower than 2.50, and the root mean square error of cross-validation (RMSECV) was less than 3.50 for starch. By comparing PLS models at different waveband regions, the optimal determination results for starch and amylose were obtained at 1923 - 1961 and 1724 - 1818 nm, respectively. NIRS was found to be a successful method to determine of the starch and amylose contents in various cereals.
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Alvarez JB, Castellano L, Huertas-García AB, Guzmán C. Molecular characterization of five novel Wx-A1 alleles in common wheat including one silent allele by transposon insertion. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 305:110843. [PMID: 33691970 DOI: 10.1016/j.plantsci.2021.110843] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Revised: 01/26/2021] [Accepted: 02/02/2021] [Indexed: 05/21/2023]
Abstract
Wheat starch is composed of two glucose polymers, amylose and amylopectin. Although several starch synthases are responsible for its synthesis, only the waxy protein is associated with the amylose synthesis. The waxy protein composition of 45 Spanish common wheat landraces from Andalusia (southern Spain) was evaluated. Within these materials, five novel alleles for the Wx-A1 gene were detected. Four of them showed functional proteins (Wx-A1p, Wx-A1q, Wx-A1r and Wx-A1s), although some amino acid changes were found in the mature protein sequence. However, one of them (Wx-A1t) exhibited loss of the Wx-A1 protein, and its base sequence contained one large insert (1,073 bp) in the tenth exon, that interrupted the ORF of the Wx-A1 gene. This insert exhibited the characteristics of a Class II transposon of the Mutator superfamily, which had not been described previously, and has been named Baetica. The conservation of such inserts could be related to their low effect on vital properties of the plants, as occurs with most of the genes associated with technological quality. In conclusion, the evaluation of old wheat landraces showed that, in addition to their use as alternative crops, these materials could be a useful source of interesting genes in wheat quality improvement.
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Affiliation(s)
- Juan B Alvarez
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, CeiA3, ES-14071, Córdoba, Spain.
| | - Laura Castellano
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, CeiA3, ES-14071, Córdoba, Spain.
| | - Ana B Huertas-García
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, CeiA3, ES-14071, Córdoba, Spain.
| | - Carlos Guzmán
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, CeiA3, ES-14071, Córdoba, Spain.
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Jiang Z, Liu Q, Zhou X, Li X, Wang F, Liu Y. Identification of characteristic starch properties of wheat varieties used to commercially produce dried noodles. Int J Food Sci Technol 2021. [DOI: 10.1111/ijfs.14723] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Zongyuan Jiang
- School of Chemistry and Food Engineering Changsha University of Science & Technology Changsha410114 Hunan Province China
| | - Qingjing Liu
- School of Chemistry and Food Engineering Changsha University of Science & Technology Changsha410114 Hunan Province China
| | - Xiaoling Zhou
- Hunan Kemen Noodle Manufacturing Co., Ltd Changsha410114 Hunan Province China
| | - Xianghong Li
- School of Chemistry and Food Engineering Changsha University of Science & Technology Changsha410114 Hunan Province China
| | - Faxiang Wang
- School of Chemistry and Food Engineering Changsha University of Science & Technology Changsha410114 Hunan Province China
| | - Yongle Liu
- School of Chemistry and Food Engineering Changsha University of Science & Technology Changsha410114 Hunan Province China
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Jaymand M. Chemically Modified Natural Polymer-Based Theranostic Nanomedicines: Are They the Golden Gate toward a de Novo Clinical Approach against Cancer? ACS Biomater Sci Eng 2019; 6:134-166. [DOI: 10.1021/acsbiomaterials.9b00802] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Mehdi Jaymand
- Nano Drug Delivery Research Center, Health Technology Institute, Kermanshah University of Medical Sciences, Kermanshah 6715847141, Iran
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Gurunathan S, Ramadoss BR, Mudili V, Siddaiah C, Kalagatur NK, Bapu JRK, Mohan CD, Alqarawi AA, Hashem A, Abd_Allah EF. Single Nucleotide Polymorphisms in Starch Biosynthetic Genes Associated With Increased Resistant Starch Concentration in Rice Mutant. Front Genet 2019; 10:946. [PMID: 31803220 PMCID: PMC6872638 DOI: 10.3389/fgene.2019.00946] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Accepted: 09/05/2019] [Indexed: 01/22/2023] Open
Abstract
Resistant Starch (RS), plays a crucial role in human health and nutrition by controlling glucose metabolism. RS or dietary fibre content in rice is low because it goes through a variety of process before it is ready for cooking and consumption. Hence, this study was carried out to develop a rice mutant with increased RS. The rice mutant (γ278) with increased RS was developed by utilizing gamma (γ) rays as a mutagen. Mutant γ278 was characterized for mutations in the starch biosynthetic genes viz., GBSSI, SSI, SSIIa, SSIIIa, SBEIa, and SBEIIb to reveal the functional mutations/variations led to high RS content in rice. A total of 31 sequence variants/mutations in six genes were identified. We report the discovery of three deleterious mutation/variants each in GBSSI, SSIIa, and SSIIIa with the potential to increase RS content in rice. Further, wild × mutant crosses were made to develop an F2 population to study the effect of combination of deleterious mutations. The SNP (GBSSI:ssIIa:ssIIIa) combination responsible for high RS content in F2 population was identified and recorded highest amylose content (AC) (26.18%) and RS (8.68%) content. In conclusion, this marker combination will be highly useful to develop a rice variety with increased RS.
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Affiliation(s)
- Selvakumar Gurunathan
- Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, India
- DRDO-BU-Centre for Life Sciences, Bharathiar University Campus, Coimbatore, India
| | | | - Venkataramana Mudili
- DRDO-BU-Centre for Life Sciences, Bharathiar University Campus, Coimbatore, India
| | | | | | | | | | - Abdulaziz A. Alqarawi
- Department of Plant Production, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Abeer Hashem
- Botany and Microbiology, Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Elsayed Fathi Abd_Allah
- Department of Plant Production, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
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Luo M, Ding J, Li Y, Tang H, Qi P, Ma J, Wang J, Chen G, Pu Z, Li W, Li Z, Harwood W, Lan X, Deng M, Lu Z, Wei Y, Zheng Y, Jiang Q. A single-base change at a splice site in Wx-A1 caused incorrect RNA splicing and gene inactivation in a wheat EMS mutant line. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2019; 132:2097-2109. [PMID: 30993362 DOI: 10.1007/s00122-019-03340-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2018] [Accepted: 04/05/2019] [Indexed: 06/09/2023]
Abstract
An EMS-induced single-base mutation at a splice site caused abnormal RNA splicing and resulted in the gene inactivation and the lack of Wx-A1 protein in a wheat EMS mutant line. An EMS-mutagenized population was generated using common wheat cv. SM126 consisting of 10,600 M2 plants. One Wx-A1 null mutant was identified through analyses of 390 grains produced from 130 M2 plants using electrophoresis analyses. The Wx-A1 sequences of parental line SM126 and M2-31 mutant were determined as 2781 bp, and there was only one SNP mutation between them. The SNP was a mutation from G to A at nucleotide sequence position 2168 bp (G2168A) downstream of the start codon which was located at the splicing site within the eighth intron. All 52 cDNA transcripts were found to be incorrectly spliced and can be summarized as five types of variations. The deletion of the exon and the exclusion of intron were structural features in abnormal splicing RNA. Together with the prediction of potential splice regulatory motifs, the mutation G2168A happened within the 5' splice site of the eighth intron and destroyed the splice donor site from GU to AU, which may have brought about a barrier against correct RNA splice, and generated abnormal mRNA, which was the mechanism of the inactivation of Wx-A1 in M2-31. The lack of Wx-A1 has resulted in changes in starch properties in the M2-31 mutant, with the reduction in amylose and starch contents. The increased grains hardness was observed in M2-31, which may be related to the lower expression level of Pinb-D1 gene. As the waxy wheat foods have a lot of advantages, the null waxy genes will be widely applied in breeding waxy wheat for varied amylose contents.
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Affiliation(s)
- Mi Luo
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Jinjin Ding
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Yu Li
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Huaping Tang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Pengfei Qi
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Jian Ma
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Jirui Wang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Guoyue Chen
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Zhien Pu
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Wei Li
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Zhongyi Li
- CSIRO Agriculture and Food, Black Mountain, Canberra, ACT, 2601, Australia
| | - Wendy Harwood
- John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Xiujin Lan
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Mei Deng
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Zhenxiang Lu
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, T1J 4B1, Canada
| | - Yuming Wei
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Youliang Zheng
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Qiantao Jiang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
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Daba SD, Tyagi P, Brown-Guedira G, Mohammadi M. Genome-Wide Association Studies to Identify Loci and Candidate Genes Controlling Kernel Weight and Length in a Historical United States Wheat Population. FRONTIERS IN PLANT SCIENCE 2018; 9:1045. [PMID: 30123226 PMCID: PMC6086202 DOI: 10.3389/fpls.2018.01045] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Accepted: 06/27/2018] [Indexed: 05/26/2023]
Abstract
Although kernel weight (KW) is a major component of grain yield, its contribution to yield genetic gain during breeding history has been minimal. This highlights an untapped potential for further increases in yield via improving KW. We investigated variation and genetics of KW and kernel length (KL) via genome-wide association studies (GWAS) using a historical and contemporary soft red winter wheat population representing 200 years of selection and breeding history in the United States. The observed changes of KW and KL over time did not show any conclusive trend. The population showed a structure, which was mainly explained by the time and location of germplasm development. Cluster sharing by germplasm from more than one breeding population was suggestive of episodes of germplasm exchange. Using 2 years of field-based phenotyping, we detected 26 quantitative trait loci (QTL) for KW and 27 QTL for KL with -log10(p) > 3.5. The search for candidate genes near the QTL on the wheat genome version IWGSCv1.0 has resulted in over 500 genes. The predicted functions of several of these genes are related to kernel development, photosynthesis, sucrose and starch synthesis, and assimilate remobilization and transport. We also evaluated the effect of allelic polymorphism of genes previously reported for KW and KL by using Kompetitive Allele Specific PCR (KASP) markers. Only TaGW2 showed significant association with KW. Two genes, i.e., TaSus2-2B and TaGS-D1 showed significant association with KL. Further physiological studies are needed to decipher the involvement of these genes in KW and KL development.
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Affiliation(s)
- Sintayehu D. Daba
- Department of Agronomy, Purdue University, West Lafayette, IN, United States
| | - Priyanka Tyagi
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, United States
| | - Gina Brown-Guedira
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, United States
- Small Grains Genotyping Laboratory, United States Department of Agriculture, Agricultural Research Services, Raleigh, NC, United States
| | - Mohsen Mohammadi
- Department of Agronomy, Purdue University, West Lafayette, IN, United States
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11
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Zhou YJ, Yang Q, Zhong XJ, Tang HP, Deng M, Ma J, Qi PF, Wang JR, Chen GY, Liu YX, Lu ZX, Li W, Lan XJ, Wei YM, Zheng YL, Jiang QT. Alternative splicing results in a lack of starch synthase IIa-D in Chinese wheat landrace. Genome 2018; 61:201-208. [PMID: 29401409 DOI: 10.1139/gen-2017-0246] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
We evaluated the SGP-1 protein composition of 368 Chinese wheat landraces using SDS-PAGE. The SGP-D1 null type was identified in three accessions (Xiaoqingmang, Pushanbamai, and P119). An 18-bp deletion and 9-bp variation were found at the junction region of the 7th intron and 8th exon, leading to deletion of the intron-exon junction recognition site AG when aligned the 8261-bp DNA sequence of TaSSIIa-D in Pushanbamai with that of Chinese Spring. Four cDNA types with mis-spliced isoforms were subsequently detected through amplification of TaSSIIa-D cDNAs. Among these, nine type II cDNAs with a 16-bp deletion in the 8th exon were detected, indicating that the major transcriptional pattern of TaSSIIa in Pushanbamai is type II. In the type IV cDNA, a 97-bp sequence remains undeleted in the end of the 5th exon. The amylose content in Pushanbamai was significantly higher than that in all control lines under field conditions, which suggested that deletion of SGP-D1 has an efficient impact on amylose content. As the TaSSIIa gene plays an important role in regulating the content of amylose, it is anticipated that these natural variants of TaSSIIa-D will provide useful resources for quality improvement in wheat.
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Affiliation(s)
- Yan-Jie Zhou
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Qiang Yang
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Xiao-Juan Zhong
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Hua-Ping Tang
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Mei Deng
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Jian Ma
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Peng-Fei Qi
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Ji-Rui Wang
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Guo-Yue Chen
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Ya-Xi Liu
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Zhen-Xiang Lu
- b Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, AB T1J 4B1, Canada
| | - Wei Li
- c College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Xiu-Jin Lan
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Yu-Ming Wei
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - You-Liang Zheng
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Qian-Tao Jiang
- a Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
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12
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Zhang LL, Chen H, Luo M, Zhang XW, Deng M, Ma J, Qi PF, Wang JR, Chen GY, Liu YX, Pu ZE, Li W, Lan XJ, Wei YM, Zheng YL, Jiang QT. Transposon insertion resulted in the silencing of Wx-B1n in Chinese wheat landraces. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2017; 130:1321-1330. [PMID: 28314934 DOI: 10.1007/s00122-017-2878-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2016] [Accepted: 02/13/2017] [Indexed: 06/06/2023]
Abstract
A novel Wx-B1 allele was characterized; a transposon insertion resulted in the loss of its function, which is different from the previously reported gene silencing mechanisms at the Wx-B1 locus. The waxy protein composition of 53 Chinese wheat landraces was analyzed using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and two-dimensional gel electrophoresis; of these, 10 did not show the expression of Wx-A1 (four accession) or Wx-B1 (six accessions) protein. The results of molecular marker detection revealed that the Wx-B1 allele (Wx-B1n) showed normal expression, inconsistent with the findings of SDS-PAGE for the Xiaobaipi accession. Further cloning of the 9160-bp region covering the Wx-B1 coding region and 3'-downstream region revealed that a 2178-bp transposon fragment had been inserted at 2462 bp within the tenth exon of Wx-B1n ORF, leading to the absence of Wx-B1 protein. Sequence analysis indicated that the insertion possessed the structural features of invert repeat and target repeat elements, we deduced that it was a transposon. Further PCR analysis revealed that this fragment had moved, but not copied itself, from 3B chromosome to the current location in Wx-B1n. Therefore, the reason for the inactivation of Wx-B1n was considerably different from those for the inactivation of Wx-B1b, Wx-B1k, and Wx-B1m; to our knowledge, this kind of structural mutation has never been reported in Wx-B1 alleles. This novel allele is interesting, because it was not associated with the deletion of other quality-related genes included in the 67 kb region lost with the common null allele Wx-B1b. The null Wx-B1n might be useful for investigating gene inactivation and expression as well as for enriching the genetic resource pool for the modification of the amylose/amylopectin ratio, thereby improving wheat quality.
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Affiliation(s)
- Ling-Ling Zhang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Hu Chen
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Mi Luo
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Xiao-Wei Zhang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Mei Deng
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Jian Ma
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Peng-Fei Qi
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Ji-Rui Wang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Guo-Yue Chen
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Ya-Xi Liu
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Zhi-En Pu
- College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Wei Li
- College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Xiu-Jin Lan
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Yu-Ming Wei
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - You-Liang Zheng
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China
| | - Qian-Tao Jiang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
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Raja RB, Agasimani S, Jaiswal S, Thiruvengadam V, Sabariappan R, Chibbar RN, Ram SG. EcoTILLING by sequencing reveals polymorphisms in genes encoding starch synthases that are associated with low glycemic response in rice. BMC PLANT BIOLOGY 2017; 17:13. [PMID: 28088172 PMCID: PMC5423428 DOI: 10.1186/s12870-016-0968-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2016] [Accepted: 12/23/2016] [Indexed: 05/06/2023]
Abstract
BACKGROUND Glycemic response, a trait that is tedious to be assayed in cereal staples, has been identified as a factor correlated with alarmingly increasing prevalence of Type II diabetes. Reverse genetics based discovery of allelic variants associated with this nutritional trait gains significance as they can provide scope for genetic improvement of this factor which is otherwise difficult to target through routine screening methods. RESULTS Through EcoTILLING by sequencing in 512 rice accessions, we report the discovery of six deleterious variants in the genes with potential to increase Resistant Starch (RS) and reduce Hydrolysis Index (HI) of starch. By deconvolution of the variant harbouring EcoTILLING DNA pools, we discovered accessions with a minimum of one to a maximum of three deleterious allelic variants in the candidate genes. CONCLUSIONS Through biochemical assays, we confirmed the potential role of the discovered alleles alone or in combinations in increasing RS the key factor for reduction in glycemic response.
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Affiliation(s)
- Ramadoss Bharathi Raja
- Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, 641 003, Tamil Nadu, India
- Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Somanath Agasimani
- Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, 641 003, Tamil Nadu, India
| | - Sarita Jaiswal
- Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Venkatesan Thiruvengadam
- Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, 641 003, Tamil Nadu, India
| | - Robin Sabariappan
- Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, 641 003, Tamil Nadu, India
| | - Ravindra N Chibbar
- Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Sundaram Ganesh Ram
- Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, 641 003, Tamil Nadu, India.
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Chaudhary N, Dangi P, Khatkar BS. Evaluation of molecular weight distribution of unreduced wheat gluten proteins associated with noodle quality. Journal of Food Science and Technology 2016; 53:2695-704. [PMID: 27478225 DOI: 10.1007/s13197-016-2241-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 04/22/2016] [Accepted: 04/27/2016] [Indexed: 10/21/2022]
Abstract
Unreduced gluten proteins of Indian wheat varieties viz.C306, DBW16, HI977 and HW2004 were separated using size-exclusion chromatography (SEC). Statistical correlation of area % of eluted peaks with properties of flour, dough and noodles was elucidated. Chromatograms of gluten proteins were classified primarily into five peaks in decreasing molecular size range and relative proportion were expressed in terms of area % of individual peaks which depicts the quantitative variation in protein eluted at different retention times. Cooking time and cooked weight of noodles depicted positive correlation with peak I and negative correlation with peak II which predominantly composed of glutenins and gliadins, respectively. Oil uptake and cooking loss were negatively association with peak I and positively with peak II. Noodle hardness, springiness, cohesiveness and chewiness were positively correlated with peak I and negatively to peak II, though adhesiveness was unaffected by SEC eluted peaks statistically.
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Affiliation(s)
- Nisha Chaudhary
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana 125001 India
| | - Priya Dangi
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana 125001 India
| | - B S Khatkar
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana 125001 India
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15
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Chaudhary N, Dangi P, Khatkar BS. Assessment of molecular weight distribution of wheat gluten proteins for chapatti quality. Food Chem 2016; 199:28-35. [DOI: 10.1016/j.foodchem.2015.11.106] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Revised: 11/19/2015] [Accepted: 11/20/2015] [Indexed: 10/22/2022]
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16
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Guzmán C, Alvarez JB. Wheat waxy proteins: polymorphism, molecular characterization and effects on starch properties. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2016; 129:1-16. [PMID: 26276148 DOI: 10.1007/s00122-015-2595-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Accepted: 08/05/2015] [Indexed: 05/21/2023]
Abstract
The starch fraction, comprising about 70% of the total dry matter in the wheat grain, can greatly affect the end-use quality of products made from wheat kernels, especially Asian noodles. Starch is associated with the shelf life and nutritional value (glycaemic index) of different wheat products. Starch quality is closely associated with the ratio of amylose to amylopectin, the two main macromolecules forming starch. In this review, we briefly summarise the discovery of waxy proteins-shown to be the sole enzymes responsible for amylose synthesis in wheat. The review particularly focuses on the different variants of these proteins, together with their molecular characterisation and evaluation of their effects on starch composition. There have been 19 different waxy protein variants described using protein electrophoresis; and at a molecular level 19, 15 and seven alleles described for Wx-A1, Wx-B1 and Wx-D1, respectively. This large variability, found in modern wheat and genetic resources such as wheat ancestors and wild relatives, is in some cases not properly ordered. The proper ordering of all the data generated is the key to enhancing use in breeding programmes of the current variability described, and thus generating wheat with novel starch properties to satisfy the demand of industry and consumers for novel high-quality processed food.
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Affiliation(s)
- Carlos Guzmán
- CIMMYT. Global Wheat Program, Km 45 Carretera México-Veracruz, El Batán, C.P. 56237, Texcoco, Estado De México, Mexico.
| | - Juan B Alvarez
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, 14071, Córdoba, Spain
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17
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Ayala M, Alvarez JB, Yamamori M, Guzmán C. Molecular characterization of waxy alleles in three subspecies of hexaploid wheat and identification of two novel Wx-B1 alleles. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2015; 128:2427-2435. [PMID: 26276149 DOI: 10.1007/s00122-015-2597-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Accepted: 08/05/2015] [Indexed: 06/04/2023]
Abstract
Two novel Wx - B1 null alleles that enlarge the genetic variability for this wheat gene were characterized, whose effects on wheat quality could be different to those of the Wx - B1b allele. The starch composition of wheat grain has a primary influence on flour quality. Wheat starch consists of two types of glucose polymers: amylose (22-35% of the total) and amylopectin (68-75% of the total). Amylose is synthesized by waxy proteins. Several studies have contributed to the catalogue of waxy alleles available for breeders, and the search for novel alleles of these and other proteins related to flour quality continues. In this report, we describe the characterization of two novel Wx-B1 alleles (Wx-B1k and Wx-B1m) in a collection of macha, Indian dwarf and club wheat. Several accessions lacking Wx-B1 protein were detected, and some were caused by the common Wx-B1b null allele. Of the other accessions, four from Indian dwarf wheat showed the insertion of 4 bp within the seventh exon, and one from club wheat had a deletion of four nucleotides in the second exon. These mutations were novel and provisionally catalogued as Wx-B1k and Wx-B1m, respectively, and could be used to enlarge the genetic variability for this gene.
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Affiliation(s)
- Marcela Ayala
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, 14071, Córdoba, Spain
- División de Fitomejoramiento, Departamento de Producción Agrícola, Facultad de Ciencias Agrarias, Universidad Nacional de Asunción, San Lorenzo, Paraguay
| | - Juan B Alvarez
- Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Campus de Rabanales, Universidad de Córdoba, 14071, Córdoba, Spain.
| | - Makoto Yamamori
- NARO Institute of Crop Science, National Agriculture and Food Research organization (NARO), Tsukuba, Ibaraki, Japan
| | - Carlos Guzmán
- Wheat Chemistry and Quality Laboratory, Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico
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18
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Luo J, Ahmed R, Kosar-Hashemi B, Larroque O, Butardo VM, Tanner GJ, Colgrave ML, Upadhyaya NM, Tetlow IJ, Emes MJ, Millar A, Jobling SA, Morell MK, Li Z. The different effects of starch synthase IIa mutations or variation on endosperm amylose content of barley, wheat and rice are determined by the distribution of starch synthase I and starch branching enzyme IIb between the starch granule and amyloplast stroma. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2015; 128:1407-19. [PMID: 25893467 DOI: 10.1007/s00122-015-2515-z] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Accepted: 04/03/2015] [Indexed: 05/26/2023]
Abstract
The distribution of starch synthase I and starch branching enzyme IIb between the starch granule and amyloplast stroma plays an important role in determining endosperm amylose content of cereal grains. Starch synthase IIa (SSIIa) catalyses the polymerisation of intermediate length glucan chains of amylopectin in the endosperm of cereals. Mutations of SSIIa genes in barley and wheat and inactive SSIIa variant in rice induce similar effects on the starch structure and the amylose content, but the severity of the phenotypes is different. This study compared the levels of transcripts and partitioning of proteins of starch synthase I (SSI) and starch branching enzyme IIb (SBEIIb) inside and outside the starch granules in the developing endosperms of these ssIIa mutants and inactive SSIIa variant. Pleiotropic effects on starch granule-bound proteins suggested that the different effects of SSIIa mutations on endosperm amylose content of barley, wheat and rice are determined by the distribution of SSI and SBEIIb between the starch granule and amyloplast stroma in cereals. Regulation of starch synthesis in ssIIa mutants and inactive SSIIa variant may be at post-translational level or the altered amylopectin structure deprives the affinity of SSI and SBEIIb to amylopectin.
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Affiliation(s)
- Jixun Luo
- CSIRO Agriculture Flagship, GPO Box 1600, Canberra, ACT, 2601, Australia
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Cimini S, Locato V, Vergauwen R, Paradiso A, Cecchini C, Vandenpoel L, Verspreet J, Courtin CM, D'Egidio MG, Van den Ende W, De Gara L. Fructan biosynthesis and degradation as part of plant metabolism controlling sugar fluxes during durum wheat kernel maturation. FRONTIERS IN PLANT SCIENCE 2015; 6:89. [PMID: 25750648 PMCID: PMC4335405 DOI: 10.3389/fpls.2015.00089] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2014] [Accepted: 02/03/2015] [Indexed: 05/15/2023]
Abstract
Wheat kernels contain fructans, fructose based oligosaccharides with prebiotic properties, in levels between 2 and 35 weight % depending on the developmental stage of the kernel. To improve knowledge on the metabolic pathways leading to fructan storage and degradation, carbohydrate fluxes occurring during durum wheat kernel development were analyzed. Kernels were collected at various developmental stages and quali-quantitative analysis of carbohydrates (mono- and di-saccharides, fructans, starch) was performed, alongside analysis of the activities and gene expression of the enzymes involved in their biosynthesis and hydrolysis. High resolution HPAEC-PAD of fructan contained in durum wheat kernels revealed that fructan content is higher at the beginning of kernel development, when fructans with higher DP, such as bifurcose and 1,1-nystose, were mainly found. The changes in fructan pool observed during kernel maturation might be part of the signaling pathways influencing carbohydrate metabolism and storage in wheat kernels during development. During the first developmental stages fructan accumulation may contribute to make kernels more effective Suc sinks and to participate in osmotic regulation while the observed decrease in their content may mark the transition to later developmental stages, transition that is also orchestrated by changes in redox balance.
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Affiliation(s)
- Sara Cimini
- Laboratory of Plant Biochemistry and Food Sciences, Campus Bio-Medico UniversityRome, Italy
| | - Vittoria Locato
- Laboratory of Plant Biochemistry and Food Sciences, Campus Bio-Medico UniversityRome, Italy
| | - Rudy Vergauwen
- Laboratory for Molecular Plant Biology and Leuven Food Science and Nutrition Research Centre (LFoRCe), KU LeuvenLeuven, Belgium
| | | | - Cristina Cecchini
- Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Unità di ricerca per la Valorizzazione Qualitativa dei CerealiRome, Italy
| | - Liesbeth Vandenpoel
- Laboratory of Plant Biochemistry and Food Sciences, Campus Bio-Medico UniversityRome, Italy
- Laboratory for Molecular Plant Biology and Leuven Food Science and Nutrition Research Centre (LFoRCe), KU LeuvenLeuven, Belgium
| | - Joran Verspreet
- Laboratory of Food Chemistry and Biochemistry, KU LeuvenLeuven, Belgium
| | | | - Maria Grazia D'Egidio
- Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Unità di ricerca per la Valorizzazione Qualitativa dei CerealiRome, Italy
| | - Wim Van den Ende
- Laboratory for Molecular Plant Biology and Leuven Food Science and Nutrition Research Centre (LFoRCe), KU LeuvenLeuven, Belgium
| | - Laura De Gara
- Laboratory of Plant Biochemistry and Food Sciences, Campus Bio-Medico UniversityRome, Italy
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Nhan MT, Copeland L. Effects of Growing Environment on Properties of Starch from Five Australian Wheat Varieties. Cereal Chem 2014. [DOI: 10.1094/cchem-01-14-0013-r] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Minh Tri Nhan
- Faculty of Agriculture and Environment, University of Sydney, NSW, Australia
- Present address: College of Agriculture and Applied Biology, Can Tho University, Can Tho, Vietnam
| | - Les Copeland
- Faculty of Agriculture and Environment, University of Sydney, NSW, Australia
- Corresponding author. Phone: +61 2 8627 1017
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McMaugh SJ, Thistleton JL, Anschaw E, Luo J, Konik-Rose C, Wang H, Huang M, Larroque O, Regina A, Jobling SA, Morell MK, Li Z. Suppression of starch synthase I expression affects the granule morphology and granule size and fine structure of starch in wheat endosperm. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:2189-201. [PMID: 24634486 PMCID: PMC3991748 DOI: 10.1093/jxb/eru095] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Studies in Arabidopsis and rice suggest that manipulation of starch synthase I (SSI) expression in wheat may lead to the production of wheat grains with novel starch structure and properties. This work describes the suppression of SSI expression in wheat grains using RNAi technology, which leads to a low level of enzymatic activity for SSI in the developing endosperm, and a low abundance of SSI protein inside the starch granules of mature grains. The amylopectin fraction of starch from the SSI suppressed lines showed an increased frequency of very short chains (degree of polymerization, dp 6 and 7), a lower proportion of short chains (dp 8-12), and more intermediate chains (dp 13-20) than in the grain from their negative segregant lines. In the most severely affected line, amylose content was significantly increased, the morphology of starch granules was changed, and the proportion of B starch granules was significantly reduced. The change of the fine structure of the starch in the SSI-RNAi suppression lines alters the gelatinization temperature, swelling power, and viscosity of the starch. This work demonstrates that the roles of SSI in the determination of starch structure and properties are similar among different cereals and Arabidopsis.
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Affiliation(s)
- Stephen J McMaugh
- CSIRO Food Future Flagship, GPO Box 1600, Canberra, ACT 2601, Australia
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Ahuja G, Jaiswal S, Hucl P, Chibbar RN. Differences in Starch Granule Composition and Structure Influence In Vitro Enzymatic Hydrolysis of Grain Meal and Extracted Starch in Two Classes of Canadian Wheat (Triticum aestivumL.). Cereal Chem 2014. [DOI: 10.1094/cchem-07-13-0139-r] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Geetika Ahuja
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Sarita Jaiswal
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Pierre Hucl
- Crop Development Centre, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Ravindra N. Chibbar
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
- Corresponding author. Phone: (306) 966-4969. Fax: (306) 966-5015. E-mail:
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FASAHAT PARVIZ, RAHMAN SADEQUR, RATNAM WICKNESWARI. Genetic controls on starch amylose content in wheat and rice grains. J Genet 2014; 93:279-92. [DOI: 10.1007/s12041-014-0325-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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24
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Gulia N, Khatkar BS. Relationship of dough thermomechanical properties with oil uptake, cooking and textural properties of instant fried noodles. FOOD SCI TECHNOL INT 2013; 20:171-82. [DOI: 10.1177/1082013213476076] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Instant noodles were prepared from fifteen diverse wheat cultivars varying widely in their flour quality and dough rheology. Dough thermomechanical parameters obtained by Mixolab and flour analytical properties were correlated with the quality of instant noodles including oil uptake, cooking quality and textural attributes. The Mixolab parameters dough development time and dough stability showed significant positive correlation with cooking time, cooked weight, overall acceptability, hardness, springiness, cohesiveness and chewiness of noodles, while negatively correlated with oil uptake and cooking loss, therefore, exhibiting a marked positive effect on quality of instant noodles. Lower protein breakdown represented by C2 torque was also positively related with overall acceptability, hardness, springiness, cohesiveness and chewiness of noodles. Stickiness/adhesiveness of noodles was revealed to be mainly conferred by falling number values ( R2 = 0.671) and damaged starch ( R2 = 0.523) content of wheat flour samples. Flour samples with lesser values of protein content, sodium dodecyl sulphate sedimentation volume, thermal stability of proteins, dough stability and dough development time were found to be linked with poor noodle quality. Medium strong flours performed better in noodle making, while weaker flours demonstrated poor noodle quality. Dough rheology of good noodle making flours was characterized with higher dough development time, dough stability, C2, C3, C4 as well as C5 values. Noodles with higher overall acceptability showed a more continuous and uniform protein starch matrix in comparison to the poor counterparts.
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Affiliation(s)
- Neelam Gulia
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, India
| | - BS Khatkar
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, India
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Kharabian-Masouleh A, Waters DLE, Reinke RF, Ward R, Henry RJ. SNP in starch biosynthesis genes associated with nutritional and functional properties of rice. Sci Rep 2012; 2:557. [PMID: 22870386 PMCID: PMC3412280 DOI: 10.1038/srep00557] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2012] [Accepted: 07/23/2012] [Indexed: 12/25/2022] Open
Abstract
Starch is a major component of human diets. The relative contribution of variation in the genes of starch biosynthesis to the nutritional and functional properties of the rice was evaluated in a rice breeding population. Sequencing 18 genes involved in starch synthesis in a population of 233 rice breeding lines discovered 66 functional SNPs in exonic regions. Five genes, AGPS2b, Isoamylase1, SPHOL, SSIIb and SSIVb showed no polymorphism. Association analysis found 31 of the SNP were associated with differences in pasting and cooking quality properties of the rice lines. Two genes appear to be the major loci controlling traits under human selection in rice, GBSSI (waxy gene) and SSIIa. GBSSI influenced amylose content and retrogradation. Other genes contributing to retrogradation were GPT1, SSI, BEI and SSIIIa. SSIIa explained much of the variation in cooking characteristics. Other genes had relatively small effects.
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Affiliation(s)
| | - Daniel L. E. Waters
- Southern Cross Plant Science, Southern Cross University, Lismore, NSW 2480, Australia
| | - Russell F. Reinke
- International Rice Research Institute, National Institute of Crop Science (NICS) RDA 151 Suin-ro, Gwonsun-gu, Suwon 441-857, Republic of Korea
- EH Graham Centre for Agricultural Innovation (NSW Department of Primary Industries and Charles Sturt University), Wagga Wagga Agricultural Institute, NSW DPI, Private Mail Bag, Pine Gully Road, Wagga Wagga, New South Wales, 2650, Australia
| | - Rachelle Ward
- Yanco Agricultural Institute, Trunk Road 80, Yanco NSW 2703, Australia
| | - Robert J. Henry
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, St Lucia, Qld 4072, Australia
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Kharabian-Masouleh A, Waters DLE, Reinke RF, Henry RJ. Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing. PLANT BIOTECHNOLOGY JOURNAL 2011; 9:1074-85. [PMID: 21645201 DOI: 10.1111/j.1467-7652.2011.00629.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
High-throughput sequencing of pooled DNA was applied to polymorphism discovery in candidate genes involved in starch synthesis. This approach employed semi- to long-range PCR (LR-PCR) followed by next-generation sequencing technology. A total of 17 rice starch synthesis genes encoding seven classes of enzymes, including ADP-glucose pyrophosphorylase (AGPase), granule starch synthase (GBSS), soluble starch synthase (SS), starch branching enzyme (BE), starch debranching enzyme (DBE) and starch phosphorylase (SPHOL) and phosphate translocator (GPT1) from 233 genotypes were PCR amplified using semi- to long-range PCR. The amplification products were equimolarly pooled and sequenced using massively parallel sequencing technology (MPS). By detecting single nucleotide polymorphism (SNP)/Indels in both coding and noncoding areas of the genes, we identified genetic differences and characterized the SNP/Indel variation and distribution patterns among individual starch candidate genes. Approximately, 60.9 million reads were generated, of which 54.8 million (90%) mapped to the reference sequences. The average coverage rate ranged from 12,708 to 38,300 times for SSIIa and SSIIIb, respectively. SNPs and single/multiple-base Indels were analysed in a total assembled length of 116,403 bp. In total, 501 SNPs and 113 Indels were detected across the 17 starch-related loci. The ratio of synonymous to nonsynonymous SNPs (Ka/Ks) test indicated GBSSI and isoamylase 1 (ISA1) as the least diversified (most purified) and conservative genes as the studied populations have been through cycles of selection. This report demonstrates a useful strategy for screening germplasm by MPS to discover variants in a specific target group of genes.
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Affiliation(s)
- Ardashir Kharabian-Masouleh
- Southern Cross Plant Science, Centre for Plant Conservation Genetics, Southern Cross University, Lismore, NSW 2480, Australia.
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27
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Li Z, Li D, Du X, Wang H, Larroque O, Jenkins CLD, Jobling SA, Morell MK. The barley amo1 locus is tightly linked to the starch synthase IIIa gene and negatively regulates expression of granule-bound starch synthetic genes. JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:5217-31. [PMID: 21813797 PMCID: PMC3193023 DOI: 10.1093/jxb/err239] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2011] [Revised: 06/20/2011] [Accepted: 07/07/2011] [Indexed: 05/09/2023]
Abstract
In this study of barley starch synthesis, the interaction between mutations at the sex6 locus and the amo1 locus has been characterized. Four barley genotypes, the wild type, sex6, amo1, and the amo1sex6 double mutant, were generated by backcrossing the sex6 mutation present in Himalaya292 into the amo1 'high amylose Glacier'. The wild type, amo1, and sex6 genotypes gave starch phenotypes consistent with previous studies. However, the amo1sex6 double mutant yielded an unexpected phenotype, a significant increase in starch content relative to the sex6 phenotype. Amylose content (as a percentage of starch) was not increased above the level observed for the sex6 mutation alone; however, on a per seed basis, grain from lines containing the amo1 mutation (amo1 mutants and amo1sex6 double mutants) synthesize significantly more amylose than the wild-type lines and sex6 mutants. The level of granule-bound starch synthase I (GBSSI) protein in starch granules is increased in lines containing the amo1 mutation (amo1 and amo1sex6). In the amo1 genotype, starch synthase I (SSI), SSIIa, starch branching enzyme IIa (SBEIIa), and SBEIIb also markedly increased in the starch granules. Genetic mapping studies indicate that the ssIIIa gene is tightly linked to the amo1 locus, and the SSIIIa protein from the amo1 mutant has a leucine to arginine residue substitution in a conserved domain. Zymogram analysis indicates that the amo1 phenotype is not a consequence of total loss of enzymatic activity although it remains possible that the amo1 phenotype is underpinned by a more subtle change. It is therefore proposed that amo1 may be a negative regulator of other genes of starch synthesis.
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Affiliation(s)
- Zhongyi Li
- CSIRO Food Future National Research Flagship, GPO Box 1600, Canberra ACT 2601 Australia.
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28
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Guzmán C, Caballero L, Alvarez JB, Yamamori M. Amylose content and starch properties in emmer and durum wheat lines with different waxy proteins composition. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2011; 91:1625-1629. [PMID: 21445866 DOI: 10.1002/jsfa.4358] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2010] [Revised: 11/21/2010] [Accepted: 01/26/2011] [Indexed: 05/30/2023]
Abstract
BACKGROUND Emmer wheat is a neglected crop that can be used in the breeding of modern durum wheat for quality. One important aspect of this quality is the starch composition, which is related to the waxy proteins. A collection of emmer wheat was analysed previously for waxy protein composition, and two new Wx-B1 alleles were found by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and DNA sequencing analysis. It is necessary to analyse the effect of these alleles in starch properties and compare them to durum wheat ones. RESULTS In the current study, emmer lines carrying three different Wx-B1 alleles (Wx-B1b, -B1g, -B1c*), including one with the null allele (Wx-B1b), together with durum cultivars Langdon (Wx-B1a) and Mexicali (Wx-B1c'), were analysed for amylose content. Differences were detected between both species, and the line lacking Wx-B1 protein showed a remarkably low amylose content. In addition, data from blue value, swelling power and Rapid Visco Analyzer also suggested that there were differences in starch properties among the different Wx-B1 alleles. CONCLUSION The present study suggests that the amylose content in emmer (Wx-B1g) and durum (Wx-B1a) standard materials is not the same; therefore some starch properties are different between the two species. The variation found could be used to enlarge the gene pool of durum wheat and design new materials with desirable amylose content.
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Affiliation(s)
- Carlos Guzmán
- Departamento de Genética, Escuela Técnica Superior de Ingenieros Agrónomos y de Montes, Universidad de Córdoba, ES-14071 Córdoba, Spain.
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29
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Shapter F, Eggler P, Lee L, Henry R. Variation in Granule Bound Starch Synthase I (GBSSI) loci amongst Australian wild cereal relatives (Poaceae). J Cereal Sci 2009. [DOI: 10.1016/j.jcs.2008.06.013] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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30
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Clarke B, Liang R, Morell MK, Bird AR, Jenkins CLD, Li Z. Gene expression in a starch synthase IIa mutant of barley: changes in the level of gene transcription and grain composition. Funct Integr Genomics 2008; 8:211-21. [DOI: 10.1007/s10142-007-0070-7] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2007] [Revised: 12/11/2007] [Accepted: 12/16/2007] [Indexed: 10/22/2022]
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31
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Konik-Rose C, Thistleton J, Chanvrier H, Tan I, Halley P, Gidley M, Kosar-Hashemi B, Wang H, Larroque O, Ikea J, McMaugh S, Regina A, Rahman S, Morell M, Li Z. Effects of starch synthase IIa gene dosage on grain, protein and starch in endosperm of wheat. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2007; 115:1053-65. [PMID: 17721773 DOI: 10.1007/s00122-007-0631-0] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2007] [Accepted: 08/06/2007] [Indexed: 05/16/2023]
Abstract
Starch synthases (SS) are responsible for elongating the alpha-1,4 glucan chains of starch. A doubled haploid population was generated by crossing a line of wheat, which lacks functional ssIIa genes on each genome (abd), and an Australian wheat cultivar, Sunco, with wild type ssIIa alleles on each genome (ABD). Evidence has been presented previously indicating that the SGP-1 (starch granule protein-1) proteins present in the starch granule in wheat are products of the ssIIa genes. Analysis of 100 progeny lines demonstrated co-segregation of the ssIIa alleles from the three genomes with the SGP-1 proteins, providing further evidence that the SGP-1 proteins are the products of the ssIIa genes. From the progeny lines, 40 doubled haploid lines representing the eight possible genotypes for SSIIa (ABD, aBD, AbD, ABd, abD, aBd, Abd, abd) were characterized for their grain weight, protein content, total starch content and starch properties. For some properties (chain length distribution, pasting properties, swelling power, and gelatinization properties), a progressive change was observed across the four classes of genotypes (wild type, single nulls, double nulls and triple nulls). However, for other grain properties (seed weight and protein content) and starch properties (total starch content, granule morphology and crystallinity, granule size distribution, amylose content, amylose-lipid dissociation properties), a statistically significant change only occurred for the triple nulls, indicating that all three genes had to be missing or inactive for a change to occur. These results illustrate the importance of SSIIa in controlling grain and starch properties and the importance of amylopectin fine structure in controlling starch granule properties in wheat.
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Labuschagne MT, Geleta N, Osthoff G. The Influence of Environment on Starch Content and Amylose to Amylopectin Ratio in Wheat. STARCH-STARKE 2007. [DOI: 10.1002/star.200600542] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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33
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Effect of starch granule structure, associated components and processing on nutritive value of cereal starch: A review. Anim Feed Sci Technol 2005. [DOI: 10.1016/j.anifeedsci.2005.02.025] [Citation(s) in RCA: 403] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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34
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Jones HD. Wheat transformation: current technology and applications to grain development and composition. J Cereal Sci 2005. [DOI: 10.1016/j.jcs.2004.08.009] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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35
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Jackowiak H, Packa D, Wiwart M, Perkowski J. Scanning electron microscopy of Fusarium damaged kernels of spring wheat. Int J Food Microbiol 2005; 98:113-23. [PMID: 15681039 DOI: 10.1016/j.ijfoodmicro.2004.05.014] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2004] [Revised: 05/24/2004] [Accepted: 05/26/2004] [Indexed: 11/24/2022]
Abstract
Kernels of five wheat cultivars (Triticum aestivum) of different bread-making quality were examined. Grown under field conditions, heads of wheat were inoculated in the flowering stage with an aqueous suspension of Fusarium culmorum conidia. Wheat heads were collected from the control and inoculated plots at full maturity. Control (non-inoculated) kernels without any symptoms of disease and Fusarium damaged kernels (FDK) were examined under scanning electron microscopy (SEM). Examination of the FDK fraction confirmed localisation of Fusarium hyphae on the surface and inside the tissues of kernels. Observations of the endosperm from Fusarium infected kernels revealed presence of fungal hyphae in the endosperm and some characteristic structural changes in many of its regions, such as partial or complete lack of the protein matrix, damage to large and small starch granules caused by fungal amylolytic enzymes, disappearance of small starch granules as the colonisation progressed, complete disappearance of the starchy endosperm under severe infection. Fungal colonisation of the endosperm and structural changes in its area were highly variable traits within the FDK fraction of a given cultivar.
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Affiliation(s)
- H Jackowiak
- Department of Animal Anatomy, Agriculture University in Poznań, 60-625 Poznań, ul. Wojska Polskiego 71c, Poland
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36
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Molecular and biochemical impacts of environmental factors on wheat grain development and protein synthesis. J Cereal Sci 2003. [DOI: 10.1016/s0733-5210(03)00030-4] [Citation(s) in RCA: 266] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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37
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Genetic Analysis of the Size of Endosperm Starch Granules in a Mapped Segregating Wheat Population. J Cereal Sci 2002. [DOI: 10.1006/jcrs.2001.0422] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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