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Pavlu S, Nikumbh S, Kovacik M, An T, Lenhard B, Simkova H, Navratilova P. Core promoterome of barley embryo. Comput Struct Biotechnol J 2024; 23:264-277. [PMID: 38173877 PMCID: PMC10762323 DOI: 10.1016/j.csbj.2023.12.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 12/01/2023] [Accepted: 12/02/2023] [Indexed: 01/05/2024] Open
Abstract
Precise localization and dissection of gene promoters are key to understanding transcriptional gene regulation and to successful bioengineering applications. The core RNA polymerase II initiation machinery is highly conserved among eukaryotes, leading to a general expectation of equivalent underlying mechanisms. Still, less is known about promoters in the plant kingdom. In this study, we employed cap analysis of gene expression (CAGE) at three embryonic developmental stages in barley to accurately map, annotate, and quantify transcription initiation events. Unsupervised discovery of de novo sequence clusters grouped promoters based on characteristic initiator and position-specific core-promoter motifs. This grouping was complemented by the annotation of transcription factor binding site (TFBS) motifs. Integration with genome-wide epigenomic data sets and gene ontology (GO) enrichment analysis further delineated the chromatin environments and functional roles of genes associated with distinct promoter categories. The TATA-box presence governs all features explored, supporting the general model of two separate genomic regulatory environments. We describe the extent and implications of alternative transcription initiation events, including those that are specific to developmental stages, which can affect the protein sequence or the presence of regions that regulate translation. The generated promoterome dataset provides a valuable genomic resource for enhancing the functional annotation of the barley genome. It also offers insights into the transcriptional regulation of individual genes and presents opportunities for the informed manipulation of promoter architecture, with the aim of enhancing traits of agronomic importance.
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Affiliation(s)
- Simon Pavlu
- Institute of Experimental Botany of the Czech Academy of Sciences, Slechtitelu 31, 77900 Olomouc, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Slechtitelu 27, 78371 Olomouc, Czech Republic
| | - Sarvesh Nikumbh
- Merck Sharp & Dohme (UK) Limited, 120 Moorgate, London EC2M 6UR, UK
| | - Martin Kovacik
- Institute of Experimental Botany of the Czech Academy of Sciences, Slechtitelu 31, 77900 Olomouc, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Slechtitelu 27, 78371 Olomouc, Czech Republic
| | - Tadaichi An
- DNAFORM Precision Gene Technologies, 230–0046 Yokohama, Kanagawa, Japan
| | - Boris Lenhard
- Computational Regulatory Genomics, MRC London Institute of Medical Sciences, London, UK
- Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK
| | - Hana Simkova
- Institute of Experimental Botany of the Czech Academy of Sciences, Slechtitelu 31, 77900 Olomouc, Czech Republic
| | - Pavla Navratilova
- Institute of Experimental Botany of the Czech Academy of Sciences, Slechtitelu 31, 77900 Olomouc, Czech Republic
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Farooqi SS, Naveed S, Qamar F, Sana A, Farooqi SH, Sabir N, Mansoor A, Sadia H. Phytochemical analysis, GC-MS characterization and antioxidant activity of Hordeum vulgare seed extracts. Heliyon 2024; 10:e27297. [PMID: 38509904 PMCID: PMC10950502 DOI: 10.1016/j.heliyon.2024.e27297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 02/27/2024] [Accepted: 02/27/2024] [Indexed: 03/22/2024] Open
Abstract
Barley scientifically known as Hordeum vulgare (HV) is a major grain crop. Over the course of time, great interest has been developed in the usage of barley, because of its various pharmacological activities. Current study is designed to determine the chemical constituents of Hordeum vulgare (HV) seed extract by GC-MS technique, and Invitro antioxidant assays i.e. 1,1-diphenyl-2-picryl-hydrazyl free radical (DPPH) and 2-azino-bis(3-ethyl benzthiazoline-6-sulfonic acid) (ABTS) methods. GC-MS identified 16 non-polar compounds in the hexane extract of HV plant, which includes carboxylic acid (6.25%), fatty acid (37.5%), carboxylic acid amide derivative of fatty acid (6.25%), triterpinoids (18.75%), fat soluble vitamin (6.25%), phytosterol (6.25%), stigmastanes (6.25%), beta diketones (6.25%), and cycloartenol (6.25%) respectively. The major compound includes Hexadecanoic acid, methyl ester (6.84%), n-Hexadecanoic acid (8.58%), 9,12-Octadecanoic acid (Z,Z)-, Methyl Ester (8.04%), 9,12-Octadecadienoic acid (Z,Z) (57.01%), Lup-20(29)-en-3-one (3.57%), γ-Sitosterol (3.31%). Some constituents such as Lup-20(29)-en-3-one, campesterol and squalene were observed and were not previously reported. Total phenolic and total flavonoid content were determined using spectrophotometric technique and calculated as gallic acid equivalents GAE/g dry weight and rutin equivalent RE/g of dry weight respectively.The highest phenolic content exhibited by the acetone extract of HV seedsi.e. 0.0597 mg GAE/g while the highest flavonoid content exhibited by dichloromethane extract i.e. 0.09 mg RE/g and 0.25 mg QE/g of dry weight respectively. All the extracts showed significant antioxidant activity in DPPH and ABTS cation decolorization assays. Methanol and dichloromethane extract showed the highest DPPH radical scavenging activity i.e. 52.41% and 42.07% at the concentration of 100 mg/ml respectively. Moreover, the IC50 has been determined by the acetone and methanol extract of HV seeds. The high antioxidant activity of its seed extracts has made this plant pharmacologically important. Conclusively, there is a vast scope to further explore the active principals of barley so that more of its pharmacological properties can be identified.
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Affiliation(s)
- Saman Shahab Farooqi
- Department of Pharmaceutical Chemistry, Jinnah University for Women, Karachi, Pakistan
| | - Safila Naveed
- Department of Pharmaceutical Chemistry, University of Karachi, Karachi, Pakistan
| | - Fatima Qamar
- Department of Pharmaceutical Chemistry, Jinnah University for Women, Karachi, Pakistan
| | - Aisha Sana
- Department of Pharmaceutical Chemistry, Jinnah University for Women, Karachi, Pakistan
| | - Shahab H. Farooqi
- Department of Mathematics, Jinnah University for Women, Karachi, Pakistan
| | - Neelam Sabir
- Department of Pharmaceutical Chemistry, Jinnah University for Women, Karachi, Pakistan
| | - Asra Mansoor
- Department of Pharmaceutics, Jinnah University for Women, Karachi, Pakistan
| | - Halima Sadia
- Department of Pharmacy Practice, Jinnah University for Women, Karachi, Pakistan
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Lemcke R, Kamble M, Schneider S, Lyngkjær MF, Radutoiu S, Wienkoop S. Integrative transcript to proteome analysis of barley during Ramularia collo-cygni leaf spot development identified several proteins that are related to fungal recognition and infection responses. Front Plant Sci 2024; 15:1367271. [PMID: 38606065 PMCID: PMC11007159 DOI: 10.3389/fpls.2024.1367271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Accepted: 02/26/2024] [Indexed: 04/13/2024]
Abstract
Introduction Ramularia leaf spot (RLS) disease is a growing threat to barley cultivation, but with no substantial resistance identified to date. Similarly, the understanding of the lifestyle of Ramularia collo-cygni (Rcc) and the prediction of RLS outbreak severity remain challenging, with Rcc displaying a rather untypical long endophytic phase and a sudden change to a necrotrophic lifestyle. The aim of this study was to provide further insights into the defense dynamics during the different stages of colonization and infection in barley in order to identify potential targets for resistance breeding. Methods Utilizing the strength of proteomics in understanding plant-pathogen interactions, we performed an integrative analysis of a published transcriptome dataset with a parallel generated proteome dataset. Therefore, we included two spring barley cultivars with contrasting susceptibilities to Rcc and two fungal isolates causing different levels of RLS symptoms. Results Interestingly, early responses in the pathogen recognition phase of the host were driven by strong responses differing between isolates. An important enzyme in this process is a xylanase inhibitor, which protected the plant from cell wall degradation by the fungal xylanase. At later time points, the differences were driven by cultivar-specific responses, affecting mostly features contributing to the pathogenesis- and senescence-related pathways or photosynthesis. Discussion This supports the hypothesis of a hemibiotrophic lifestyle of Rcc, with slight differences in trophism of the two analyzed isolates. The integration of these data modalities highlights a strength of protein-level analysis in understanding plant-pathogen interactions and reveals new features involved in fungal recognition and susceptibility in barley cultivars.
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Affiliation(s)
- René Lemcke
- Department of Plant and Environmental Sciences, Copenhagen University, Frederiksberg, Denmark
| | - Manoj Kamble
- Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
| | - Sebastian Schneider
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Michael F. Lyngkjær
- Department of Plant and Environmental Sciences, Copenhagen University, Frederiksberg, Denmark
| | - Simona Radutoiu
- Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
| | - Stefanie Wienkoop
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
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Kis A, Polgári D, Dalmadi Á, Ahmad I, Rakszegi M, Sági L, Csorba T, Havelda Z. Targeted mutations in the GW2.1 gene modulate grain traits and induce yield loss in barley. Plant Sci 2024; 340:111968. [PMID: 38157889 DOI: 10.1016/j.plantsci.2023.111968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/14/2023] [Accepted: 12/26/2023] [Indexed: 01/03/2024]
Abstract
Grain Width and Weight 2 (GW2) is an E3-ubiquitin ligase-encoding gene that negatively regulates the size and weight of the grain in cereal species. Therefore, disabling GW2 gene activity was suggested for enhancing crop productivity. We show here that CRISPR/Cas-mediated mutagenesis of the barley GW2.1 homologue results in the development of elongated grains and increased protein content. At the same time, GW2.1 loss of function induces a significant grain yield deficit caused by reduced spike numbers and low grain setting. We also show that the converse effect caused by GW2.1 absence on crop yield and protein content is largely independent of cultivation conditions. These findings indicate that the barley GW2.1 gene is necessary for the optimization between yield and grain traits. Altogether, our data show that the loss of GW2.1 gene activity in barley is associated with pleiotropic effects negatively affecting the development of generative organs and consequently the grain production. Our findings contribute to the better understanding of grain development and the utilisation of GW2.1 control in quantitative and qualitative genetic improvement of barley.
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Affiliation(s)
- András Kis
- Hungarian University of Agriculture and Life Sciences (MATE), Institute of Genetics and Biotechnology, Gödöllő, Hungary
| | - Dávid Polgári
- Hungarian University of Agriculture and Life Sciences (MATE), Institute of Genetics and Biotechnology, Gödöllő, Hungary; Agricultural Institute, Centre for Agricultural Research, Martonvásár, Hungary; Agribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Hungary
| | - Ágnes Dalmadi
- Hungarian University of Agriculture and Life Sciences (MATE), Institute of Genetics and Biotechnology, Gödöllő, Hungary; Agribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Hungary
| | - Imtiaz Ahmad
- Hungarian University of Agriculture and Life Sciences (MATE), Institute of Genetics and Biotechnology, Gödöllő, Hungary
| | - Marianna Rakszegi
- Agricultural Institute, Centre for Agricultural Research, Martonvásár, Hungary
| | - László Sági
- Agricultural Institute, Centre for Agricultural Research, Martonvásár, Hungary; Agribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Hungary
| | - Tibor Csorba
- Hungarian University of Agriculture and Life Sciences (MATE), Institute of Genetics and Biotechnology, Gödöllő, Hungary
| | - Zoltán Havelda
- Hungarian University of Agriculture and Life Sciences (MATE), Institute of Genetics and Biotechnology, Gödöllő, Hungary; Agribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Hungary.
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Opoku E, Sahu PP, Findurová H, Holub P, Urban O, Klem K. Differential physiological and production responses of C3 and C4 crops to climate factor interactions. Front Plant Sci 2024; 15:1345462. [PMID: 38371407 PMCID: PMC10869619 DOI: 10.3389/fpls.2024.1345462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 01/18/2024] [Indexed: 02/20/2024]
Abstract
This study examined the effect of the interactions of key factors associated with predicted climate change (increased temperature, and drought) and elevated CO2 concentration on C3 and C4 crop representatives, barley and sorghum. The effect of two levels of atmospheric CO2 concentration (400 and 800 ppm), three levels of temperature regime (21/7, 26/12 and 33/19°C) and two regimes of water availability (simulation of drought by gradual reduction of irrigation and well-watered control) in all combinations was investigated in a pot experiment within growth chambers for barley variety Bojos and sorghum variety Ruby. Due to differences in photosynthetic metabolism in C3 barley and C4 sorghum, leading to different responses to elevated CO2 concentration, we hypothesized mitigation of the negative drought impact in barley under elevated CO2 concentration and, conversely, improved performance of sorghum at high temperatures. The results demonstrate the decoupling of photosynthetic CO2 assimilation and production parameters in sorghum. High temperatures and elevated CO2 concentration resulted in a significant increase in sorghum above- and below-ground biomass under sufficient water availability despite the enhanced sensitivity of photosynthesis to high temperatures. However, the negative effect of drought is amplified by the effect of high temperature, similarly for biomass and photosynthetic rates. Sorghum also showed a mitigating effect of elevated CO2 concentration on the negative drought impact, particularly in reducing the decrease of relative water content in leaves. In barley, no significant factor interactions were observed, indicating the absence of mitigating the negative drought effects by elevated CO2 concentration. These complex interactions imply that, unlike barley, sorghum can be predicted to have a much higher variability in response to climate change. However, under conditions combining elevated CO2 concentration, high temperature, and sufficient water availability, the outperforming of C4 crops can be expected. On the contrary, the C3 crops can be expected to perform even better under drought conditions when accompanied by lower temperatures.
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Affiliation(s)
- Emmanuel Opoku
- Laboratory of Ecological Plant Physiology, Global Change Research Institute Czech Academy of Sciences (CAS), Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Pranav Pankaj Sahu
- Laboratory of Ecological Plant Physiology, Global Change Research Institute Czech Academy of Sciences (CAS), Brno, Czechia
| | - Hana Findurová
- Laboratory of Ecological Plant Physiology, Global Change Research Institute Czech Academy of Sciences (CAS), Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Petr Holub
- Laboratory of Ecological Plant Physiology, Global Change Research Institute Czech Academy of Sciences (CAS), Brno, Czechia
| | - Otmar Urban
- Laboratory of Ecological Plant Physiology, Global Change Research Institute Czech Academy of Sciences (CAS), Brno, Czechia
| | - Karel Klem
- Laboratory of Ecological Plant Physiology, Global Change Research Institute Czech Academy of Sciences (CAS), Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
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Ishikawa E, Kanai S, Shinozawa A, Hyakutake M, Sue M. Hordeum vulgare CYP76M57 catalyzes C 2 shortening of tryptophan side chain by C-N bond rearrangement in gramine biosynthesis. Plant J 2024. [PMID: 38281119 DOI: 10.1111/tpj.16644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/25/2023] [Accepted: 01/07/2024] [Indexed: 01/29/2024]
Abstract
The indole alkaloid gramine, 3-(dimethylaminomethyl)indole, is a defensive specialized metabolite found in some barley cultivars. In its biosynthetic process, the tryptophan (Trp) side chain is shortened by two carbon atoms to produce 3-(aminomethyl)indole (AMI), which is then methylated by N-methyltransferase (HvNMT) to produce gramine. Although side chain shortening is one of the crucial scaffold formation steps of alkaloids originating from aromatic amino acids, the gene and enzyme involved in the Trp-AMI conversion reactions are unknown. In this study, through RNA-seq analysis, 35 transcripts were shown to correlate with gramine production; among them, an uncharacterized cytochrome P450 (CYP) gene, CYP76M57, and HvNMT were identified as candidate genes for gramine production. Transgenic Arabidopsis thaliana and rice overexpressing CYP and HvNMT accumulate AMI, N-methyl-AMI, and gramine. CYP76M57, heterologously expressed in Pichia pastoris, was able to act on Trp to produce AMI. Furthermore, the amino group nitrogen of Trp was retained during the CYP76M57-catalyzed reaction, indicating that the C2 shortening of Trp proceeds with an unprecedented biosynthetic process, the removal of the carboxyl group and Cα and the rearrangement of the nitrogen atom to Cβ . In some gramine-non-accumulating barley cultivars, arginine 104 in CYP76M57 is replaced by threonine, which abolished the catalytic activity of CYP76M57 to convert Trp into AMI. These results uncovered the missing committed enzyme of gramine biosynthesis in barley and contribute to the elucidation of the potential functions of CYPs in plants and undiscovered specialized pathways.
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Affiliation(s)
- Erika Ishikawa
- Department of Agricultural Chemistry, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
| | - Shion Kanai
- Department of Agricultural Chemistry, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
| | - Akihisa Shinozawa
- Department of Bioscience, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
- The NODAI Genome Research Center (NGRC), Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
| | - Mami Hyakutake
- Department of Agricultural Chemistry, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
| | - Masayuki Sue
- Department of Agricultural Chemistry, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
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Mihók E, Polgári D, Lenykó-Thegze A, Makai D, Fábián A, Ali M, Kis A, Sepsi A, Sági L. Plasticity of parental CENH3 incorporation into the centromeres in wheat × barley F1 hybrids. Front Plant Sci 2024; 15:1324817. [PMID: 38313805 PMCID: PMC10834757 DOI: 10.3389/fpls.2024.1324817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 01/04/2024] [Indexed: 02/06/2024]
Abstract
Incorporating the centromere-specific histone H3 protein CENH3 into the centromeric nucleosomes is indispensable for accurate centromere function and balanced chromosome segregation in most eukaryotes, including higher plants. In the cell nuclei of interspecific hybrids, divergent centromeric DNAs cohabit and lead the corresponding parental chromosomes through the mitotic and meiotic cell divisions. Depending on the transmission of the parental chromosomes carrying the CENH3-encoding genes, CENH3 proteins from one or both parents may be present in these hybrids. The incorporation of parental CENH3 proteins into the divergent centromeres and their role in the chromosome elimination process in interspecific hybrids is still poorly understood. Here, we produced wheat × barley F1 hybrids that carried different combinations of barley chromosomes with genes encoding for either one (αCENH3) or both barley CENH3 protein variants (α- and βCENH3). We generated specific antibodies distinguishing between the wheat CENH3 proteins and barley αCENH3 and applied them together with FISH probes to detect the precise pattern of parental CENH3 deposition into the wheat and barley centromeric nucleosomes. Analysis of somatic and meiotic nuclei of the wheat × barley hybrids revealed the plasticity of the maternal (wheat) CENH3 proteins to become incorporated into the paternal (barley) centromeric nucleosomes. However, no evidence for paternal CENH3 plasticity was detected in this study. The significance of the unilateral centromere plasticity and possible patterns of CENH3 incorporation into centromeres in interspecific hybrids are discussed.
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Affiliation(s)
- Edit Mihók
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
- Doctoral School of Plant Sciences, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary
| | - Dávid Polgári
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
- Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary
- Agribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Centre for Agricultural Research, Martonvásár, Hungary
| | - Andrea Lenykó-Thegze
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
| | - Diána Makai
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
- Doctoral School of Plant Sciences, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary
| | - Attila Fábián
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
| | - Mohammad Ali
- Doctoral School of Plant Sciences, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary
- Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary
| | - András Kis
- Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary
| | - Adél Sepsi
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
| | - László Sági
- Centre for Agricultural Research, Hungarian Research Network, Martonvásár, Hungary
- Agribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Centre for Agricultural Research, Martonvásár, Hungary
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Kazakova E, Gorbatova I, Khanova A, Shesterikova E, Pishenin I, Prazyan A, Podlutskii M, Blinova Y, Bitarishvili S, Bondarenko E, Smirnova A, Lychenkova M, Bondarenko V, Korol M, Babina D, Makarenko E, Volkova P. Radiation Hormesis in Barley Manifests as Changes in Growth Dynamics Coordinated with the Expression of PM19L-like, CML31-like, and AOS2-like. Int J Mol Sci 2024; 25:974. [PMID: 38256048 PMCID: PMC10815718 DOI: 10.3390/ijms25020974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 01/08/2024] [Accepted: 01/10/2024] [Indexed: 01/24/2024] Open
Abstract
The stimulation of growth and development of crops using ionising radiation (radiation hormesis) has been reported by many research groups. However, specific genes contributing to the radiation stimulation of plant growth are largely unknown. In this work, we studied the impact of the low-dose γ-irradiation of barley seeds on the growth dynamics and gene expression of eight barley cultivars in a greenhouse experiment. Our findings confirmed that candidate genes of the radiation growth stimulation, previously established in barley seedlings (PM19L-like, CML31-like, and AOS2-like), are significant in radiation hormesis throughout ontogeny. In γ-stimulated cultivars, the expression of these genes was aligned with the growth dynamics, yield parameters, and physiological conditions of plants. We identified contrasting cultivars for future gene editing and found that the γ-stimulated cultivar possessed some specific abiotic stress-responsive elements in the promotors of candidate genes, possibly revealing a new level of radiation hormesis effect execution. These results can be used in creating new productive barley cultivars, ecological toxicology of radionuclides, and eustress biology studies.
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Affiliation(s)
- Elizaveta Kazakova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Irina Gorbatova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Anastasia Khanova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Ekaterina Shesterikova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Ivan Pishenin
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Alexandr Prazyan
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Mikhail Podlutskii
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Yana Blinova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Sofia Bitarishvili
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Ekaterina Bondarenko
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Alena Smirnova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Maria Lychenkova
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Vladimir Bondarenko
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Marina Korol
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Daria Babina
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
| | - Ekaterina Makarenko
- Laboratory of Molecular and Cellular Radiobiology, Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia; (E.K.); (I.G.); (A.K.); (E.S.); (I.P.); (A.P.); (Y.B.); (S.B.); (E.B.); (A.S.); (M.L.); (V.B.); (M.K.); (D.B.)
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9
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Desta KT, Choi YM, Yoon H, Lee S, Yi J, Jeon YA, Wang X, Park JC, Kim KM, Shin MJ. Comprehensive Characterization of Global Barley ( Hordeum vulgare L.) Collection Using Agronomic Traits, β-Glucan Level, Phenolic Content, and Antioxidant Activities. Plants (Basel) 2024; 13:169. [PMID: 38256723 PMCID: PMC10818635 DOI: 10.3390/plants13020169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 12/18/2023] [Accepted: 01/05/2024] [Indexed: 01/24/2024]
Abstract
This study characterized the diversity of 367 barley collections from 27 different countries, including 5 control cultivars, using several phenotypic traits. Morphological traits, including spike type, grain morphology, cold damage, and lodging rate, exhibited wide variations. Eighteen accessions matured early, while four accessions had longer culm and spike lengths than the controls. The ranges of total phenolic content (TPC), β-glucan content, ABTS•+ scavenging activity, DPPH• scavenging activity, and reducing power (RP) were 1.79-6.79 mg GAE/g, 0.14-8.41 g/100 g, 3.07-13.54 mg AAE/100 g, 1.56-6.24 mg AAE/g, and 1.31-7.86 mg AAE/g, respectively. Betaone, one of the controls, had the highest β-glucan content. Two accessions had β-glucan levels close to Betaone. Furthermore, 20 accessions exhibited increased TPC compared to the controls, while 5 accessions displayed elevated ABTS•+ scavenging activity. Among these, one accession also exhibited higher DPPH• scavenging activity and RP simultaneously. Based on the statistical analysis of variance, all the quantitative traits were significantly affected by the difference in origin (p < 0.05). On the other hand, grain morphology significantly affected biochemical traits. Multivariate analysis classified barley accessions into eight groups, demonstrating variations in quantitative traits. There were noteworthy correlations between biochemical and agronomical traits. Overall, this study characterized several barley varieties of different origins, anticipating future genomic research. The barley accessions with superior performances could be valuable alternatives in breeding.
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Affiliation(s)
- Kebede Taye Desta
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
| | - Yu-Mi Choi
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
| | - Hyemyeong Yoon
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
| | - Sukyeung Lee
- International Technology Cooperation Center, Technology Cooperation Bureau, Rural Development Administration, Jeonju 54875, Republic of Korea
| | - Jungyoon Yi
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
| | - Young-ah Jeon
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
| | - Xiaohan Wang
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
| | - Jin-Cheon Park
- National Institute of Crop Science, Rural Development Administration, Wanju 55365, Republic of Korea
| | - Kyeong-Min Kim
- National Institute of Crop Science, Rural Development Administration, Wanju 55365, Republic of Korea
| | - Myoung-Jae Shin
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea
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10
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Dreiseitl A. Mlo-Mediated Broad-Spectrum and Durable Resistance against Powdery Mildews and Its Current and Future Applications. Plants (Basel) 2024; 13:138. [PMID: 38202446 PMCID: PMC10780490 DOI: 10.3390/plants13010138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 01/02/2024] [Accepted: 01/02/2024] [Indexed: 01/12/2024]
Abstract
Mlo is a well-known broad-spectrum recessively inherited monogenic durable resistance to powdery mildew caused by Blumeria hordei found first in barley, originally in an induced mutant in 1942 and later in other mutants and also in Ethiopian landraces. The first commercial varieties possessing Mlo resistance were released during 1979-1986, but these often showed symptoms of necrotic leaf spotting associated with reduced grain yield. However, this yield penalty was successfully reduced by breeding Mlo-resistant varieties of spring barley predominate in Europe; for example, in the Czech Republic, their ratio surpassed 90% of the total number of newly released varieties. However, outside Europe, Mlo-varieties are not yet popular and can be exploited more widely. Winter barley varieties are generally non-resistant, but the use of Mlo for their breeding is controversial despite the limited adaptability of the pathogen to this resistance. The renewal of mechanically disturbed epidermal plant cell walls, including the penetration of mildews, is common in plants, and the Mlo-type resistance is exploited in many other crop species, including wheat.
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Affiliation(s)
- Antonín Dreiseitl
- Department of Integrated Plant Protection, Agrotest Fyto, Ltd., 767 01 Kroměříž, Czech Republic
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11
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Hodgson LM, Rakshit S, Lopez-Ruiz FJ, Gibberd MR, Thomas GJ, Zerihun A. Spatial Dependency in Stubble-Borne Pyrenophora teres f. teres and Influence of Sample Support Size on DNA Concentration and Fungicide Resistance Frequency. Phytopathology 2024; 114:269-281. [PMID: 37505095 DOI: 10.1094/phyto-02-23-0062-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
Fungicide resistance in foliar fungal pathogens is an increasing challenge to crop production. Yield impacts due to loss of fungicide efficacy may be reduced through effective surveillance and appropriate management intervention. For stubble-borne pathogens, off-season crop residues may be used to monitor fungicide resistance to inform pre-planting decisions; however, appropriate sampling strategies and support sizes for crop residues have not previously been considered. Here, we used Pyrenophora teres f. teres (Ptt) with resistance to demethylase inhibitor fungicides as a model system to assess spatial dependency and to compare the effects of different sampling strategies and support sizes on pathogen density (Ptt DNA concentration) and the frequency of fungicide resistance mutation. The results showed that sampling strategies (hand-picked versus raked) did not affect estimates of pathogen density or fungicide resistance frequency; however, sample variances were lower from raked samples. The effects of differing sample support size, as the size of the collection area (1.2, 8.6, or 60 m2), on fungicide resistance frequency were not evident (P > 0.05). However, measures of pathogen density increased with area size (P < 0.05); the 60 m2 area yielded the highest Ptt DNA concentration and produced the lowest number of pathogen-absent samples. Sample variances for pathogen density and fungicide resistance frequency were generally homogeneous between area sizes. The pattern of pathogen density was spatially independent; however, spatial dependency was identified for fungicide resistance frequency, with a range of 110 m, in one of the two fields surveyed. Collectively, the results inform designs for monitoring of fungicide resistance in stubble-borne pathogens.
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Affiliation(s)
- Leon M Hodgson
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Suman Rakshit
- Curtin Biometry and Agriculture Data Analytics, Centre for Crop and Disease Management, Curtin University, Bentley, WA 6102, Australia
- School of Electrical Engineering, Computing and Mathematical Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Francisco J Lopez-Ruiz
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Mark R Gibberd
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Geoff J Thomas
- Department of Primary Industries and Regional Development, South Perth, WA 6151, Australia
| | - Ayalsew Zerihun
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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12
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Kaduchová K, Čmiel V, Koláčková V, Pecinka A. EasyClick: an improved system for confocal microscopy of live roots with a user-optimized sample holder. Planta 2023; 259:22. [PMID: 38095727 PMCID: PMC10721658 DOI: 10.1007/s00425-023-04293-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 11/14/2023] [Indexed: 12/17/2023]
Abstract
MAIN CONCLUSION We describe a user-optimized sample holder EasyClick for medium-sized plants that reduces root side movements and thus greatly extends the duration of live cell confocal microscopy. Preparation and mounting of the samples are key factors for successful live cell microscopy. To acquire biologically relevant data, it is necessary to minimize stress and avoid physical damage to plant tissues during the installation of the sample into the microscope. This is challenging, particularly when the whole plant is mounted as the living sample needs to be properly anchored in the microscopic system to obtain high-quality and high-resolution data. Here, we present a user-optimized sample holder EasyClick for live cell inverted confocal microscopic analysis of plant roots with diameters from 0.3 to 0.7 mm. The EasyClick holder was tested on an inverted confocal microscope using germinating plants of several cereals. Nevertheless, it can be directly used on other types of inverted microscopes from various producers and on different plant species. The EasyClick holder effectively restricts root lateral and vertical movements. This greatly improves the conditions for time-lapse microscopy of the samples of interest.
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Affiliation(s)
- Kateřina Kaduchová
- Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University, 779 00, Olomouc, Czech Republic
| | - Vratislav Čmiel
- Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Technická 3082/12, 61600, Brno, Czech Republic.
| | - Veronika Koláčková
- Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic
| | - Ales Pecinka
- Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic.
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13
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Rajhelová H, Peikertová P, Kuzníková Ľ, Motyka O, Plachá D, Mamulová Kutláková K, Čech Barabaszová K, Thomasová B, Vaculík M, Kukutschová J. Alteration of Hordeum vulgare and Sinapis alba germination and early growth in response to airborne low-metallic automotive brake wear debris. Chemosphere 2023; 345:140540. [PMID: 37890799 DOI: 10.1016/j.chemosphere.2023.140540] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 10/23/2023] [Accepted: 10/24/2023] [Indexed: 10/29/2023]
Abstract
Road transportation significantly contributes to environmental pollution, both in terms of exhaust and non-exhaust (brake wear) emissions. As was proven, brake wear debris is released in a wide variety of sizes, shapes, and compositions. Although studies confirming the possible adverse health and environmental impact of brake wear debris were published, there is no standardized methodology for their toxicity testing, and most studies focus only on one type of brake pad and/or one test. The lack of methodology is also related to the very small amount of material released during the laboratory testing. For these reasons, this study deals with the mixture of airborne brake wear debris from several commonly used low-metallic brake pads collected following the dynamometer testing. The mixture was chosen for better simulation of the actual state in the environment and to collect a sufficient amount of particles for thorough characterization (SEM, XRPD, XRF, chromatography, and particle size distribution) and phytotoxicity testing. The particle size distribution measurement revealed a wide range of particle sizes from nanometers to hundreds of nanometers, elemental and phase analysis determined the standard elements and compounds used in the brake pad formulation. The Hordeum vulgare and Sinapis alba were chosen as representatives of monocotyledonous and dicotyledonous plants. The germination was not significantly affected by the suspension of brake wear debris; however, the root elongation was negatively influenced in both cases. Sinapis alba (IC50 = 23.13 g L-1) was more affected than Hordeum vulgare (IC50 was not found in the studied concentration range) the growth of which was even slightly stimulated in the lowest concentrations of brake wear debris. The plant biomass was also negatively affected in the case of Sinapis alba, where the IC50 values of wet and dry roots were determined to be 44.83 g L-1 and 86.86 g L-1, respectively.
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Affiliation(s)
- Hana Rajhelová
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic.
| | - Pavlína Peikertová
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Ľubomíra Kuzníková
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Oldřich Motyka
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic; Faculty of Mining and Geology, VSB-Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Daniela Plachá
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic; ENET Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Kateřina Mamulová Kutláková
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Karla Čech Barabaszová
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Barbora Thomasová
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Miroslav Vaculík
- Nanotechnology Centre, CEET, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
| | - Jana Kukutschová
- Centre for Advanced Innovation Technologies, VSB - Technical University of Ostrava, 17. listopadu 2172/15, 708 00, Ostrava-Poruba, Czech Republic
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14
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Wikström M, Persson L, Fatehi J. Aphanomyces macrosporus sp. nov. Causing Root Rot in Barley and Some Other Plants. J Fungi (Basel) 2023; 9:1144. [PMID: 38132745 PMCID: PMC10744466 DOI: 10.3390/jof9121144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/13/2023] [Accepted: 11/16/2023] [Indexed: 12/23/2023] Open
Abstract
In recent years, a new root rot disease in barley, which is caused by an Aphanomyces species, was found in field surveys in Southern Sweden and Denmark. Its symptoms occurred at the early tillering stage, around the BBCH 21 growth stage, and included the yellowing of leaves, brown coleoptiles, and the discolouration of roots. Prolonged soil wetness after rainfall favoured disease development, which sometimes advanced the yellowing patches to entire fields, resulting in lower yields. Oospores were found in the fine roots of diseased plants, and Aphanomyces isolates were obtained from these roots, as well as from the roots of barley plants grown in the greenhouse in soil samples from infected fields. Based on morphological analysis, we found that the new isolates were similar to those already obtained from barley and spinach roots in the 1990s in the same growing area. The morphological and molecular analyses performed in this study clearly separated and distinguished these barley isolates from other known Aphanomyces, and hereby Aphanomyces macrosporus sp. nov. is proposed as a new plant pathogenic species. It has larger oogonia and oospores than A. euteiches, A. cochlioides, and A. cladogamus, with one up to eight diclinous antheridia per oogonium. The phylogenetic analysis of the ITS rDNA region sequences grouped these new Aphanomyces isolates in a monophyletic clade, which was clearly distinguished from other plant pathogenic Aphanomyces species. The further pathogenicity of A. macrosporus on other plants is currently under investigation, but it is clear that it can at least infect barley, spinach, and sugar beet, indicating a wide host range for this species. The widespread presence and presumably broad host range of this new pathogenic Aphanomyces species must be considered in crop rotations.
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Affiliation(s)
| | - Lars Persson
- Brandsberga Gård AB/Agri Science Sweden AB, Brandsberga Gård 210, S-264 53 Ljungbyhed, Sweden
| | - Jamshid Fatehi
- Lantmännen BioAgri, Fågelbacksvägen 3, S-756 51 Uppsala, Sweden;
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15
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Mason M, Lehnhoff EA, Trainor PJ, Sanogo S. Suppression of Phytophthora capsici in Chile Pepper Using Brassica juncea and Hordeum vulgare Cover Crop Residues and Trichoderma harzianum as a Biocontrol Agent. Plant Dis 2023; 107:3457-3463. [PMID: 37115568 DOI: 10.1094/pdis-10-22-2485-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Phytophthora blight, caused by Phytophthora capsici, is a serious disease of many vegetable crops worldwide. In New Mexico, U.S.A., the disease affects chile pepper (Capsicum annuum L.), a major crop in the state. There is no single tool that effectively controls the disease. Continuous research is needed in identifying combination of tools that can reduce the impact of Phytophthora blight. We explored the potential of combining cover crops and biocontrol agents to reduce soilborne diseases. This study aimed to evaluate the effects of Indian mustard (Brassica juncea L.) cover crop on the antagonistic ability of Trichoderma harzianum against P. capsici in vitro and to quantify the impacts of combining soil amendment with residues from B. juncea and barley (Hordeum vulgare L.) cover crops and plastic covering on infection of chile pepper seedlings by P. capsici under greenhouse conditions. Volatiles from macerated tissue of B. juncea significantly reduced P. capsici and T. harzianum growth in the absence of soil by 89.0 and 79.0%, respectively. When incorporated in soils, volatiles from macerated tissue of B. juncea significantly reduced P. capsici and T. harzianum by 33.4 and 7.8%, respectively. T. harzianum was more resilient to B. juncea biofumigation than P. capsici. Significant reduction in disease incidence was observed with B. juncea-fumigated soil, while no disease suppression was observed with soil incorporation of H. vulgare residues. Covering soil with plastic was necessary for increasing the efficacy of B. juncea biofumigation.
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Affiliation(s)
- Makane Mason
- Department of Entomology, Plant Pathology, and Weed Science, New Mexico State University, Las Cruces, NM 88003
| | - Erik A Lehnhoff
- Department of Entomology, Plant Pathology, and Weed Science, New Mexico State University, Las Cruces, NM 88003
| | - Patrick J Trainor
- Department of Chemistry and Biochemistry, New Mexico State University, Las Cruces, NM 88003
| | - Soum Sanogo
- Department of Entomology, Plant Pathology, and Weed Science, New Mexico State University, Las Cruces, NM 88003
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16
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Osdaghi E, Taghavi SM, Aliabadi AA, Khojasteh M, Abachi H, Moallem M, Mohammadikhah S, Shah SMA, Chen G, Liu Z. Detection and Diagnosis of Bacterial Leaf Streak on Small Grain Cereals: From Laboratory to Field. Phytopathology 2023; 113:2024-2036. [PMID: 37069135 DOI: 10.1094/phyto-09-22-0343-sa] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Bacterial leaf streak of small-grain cereals is an economically important disease of wheat and barley crops. The disease occurs in many countries across the globe, with particular importance in regions characterized by high precipitation or areas in which sprinkler irrigation is used. Three genetically distinct lineages of the Gram-negative bacterium Xanthomonas translucens (X. translucens pv. undulosa, X. translucens pv. translucens, and X. translucens pv. cerealis) are responsible for most of the bacterial leaf streak infections on wheat and barley crops. Considering the seedborne nature of the pathogens, they are included in the A2 (high-risk) list of quarantine organisms for some European countries; hence, they are under strict quarantine control and zero tolerance. Due to the taxonomic complexities within X. translucens, the exact geographic distribution of each pathovar has not yet been determined. In this mini review, we provide an updated overview of the detection and diagnosis of the bacterial leaf streak pathogens. First, a short history of the leaf streak pathogens is provided, followed by the symptomology and host range of the causal agents. Then, the utility of conventional methods and high-throughput molecular approaches in the precise detection and identification of the pathogens is explained. Finally, we highlight the role of quarantine inspections and early detection of the pathogen in combating the risk of bacterial leaf streak in the 21st century's small-grains cereals' industry.
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Affiliation(s)
- Ebrahim Osdaghi
- Department of Plant Protection, College of Agriculture, University of Tehran, Karaj 31587-77871, Iran
| | - S Mohsen Taghavi
- Department of Plant Protection, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - Ali Alizadeh Aliabadi
- Plant Pathology Research Department, Iranian Research Institute of Plant Protection (IRIPP), Agricultural Research, Education and Extension Organization (AREEO), Tehran, Iran
| | - Moein Khojasteh
- Department of Plant Protection, College of Agriculture, University of Tehran, Karaj 31587-77871, Iran
- Department of Plant Protection, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - Hamid Abachi
- Department of Plant Protection, College of Agriculture, University of Tehran, Karaj 31587-77871, Iran
| | - Mahsa Moallem
- Department of Plant Protection, College of Agriculture, University of Tehran, Karaj 31587-77871, Iran
| | - Sedighe Mohammadikhah
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Rafsanjan, Iran
| | - Syed Mashab Ali Shah
- School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Gongyou Chen
- School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Zhaohui Liu
- Department of Plant Pathology, North Dakota State University, Fargo, ND, U.S.A
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17
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Dreiseitl A. Rare Virulences and Great Pathotype Diversity of a Central European Blumeria hordei Population. J Fungi (Basel) 2023; 9:1045. [PMID: 37998851 PMCID: PMC10672294 DOI: 10.3390/jof9111045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 11/25/2023] Open
Abstract
Barley is an important crop grown on almost 49 Mha worldwide in 2021 and is particularly significant in Europe where powdery mildew is the most frequent disease on susceptible varieties. The most suitable way to protect crops is by exploiting genetic resistance. However, the causal agent Blumeria hordei is an extremely adaptable pathogen. The aims of this research were to increase our knowledge of the rapidly changing pathogen population and detect rare virulences. Random samples of the pathogen were obtained from the air by means of a mobile spore sampler. Spores were collected by driving across the Czech Republic in 2019, 2021 and 2023, and 299 isolates were analyzed on 121 host varieties. No infection occurred on 35 differentials, rare virulence was recorded on 31 varieties and a higher virulence frequency was found on 55 differentials. A core set of differentials along with four additional varieties distinguishes 295 pathotypes (Simple Index = 0.987) and the virulence complexity of isolates varied from 4 to 19 with an average of 10.39. The detection of new virulences, the increasing frequency of previously rare virulences and high pathotype diversity as well as high virulence complexity confirm that using nonspecific durable resistance is crucial for successfully breeding commercial varieties.
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Affiliation(s)
- Antonín Dreiseitl
- Department of Integrated Plant Protection, Agrotest Fyto Ltd., 767 01 Kroměříž, Czech Republic
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18
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Câmara AS, Kubalová I, Schubert V. Helical chromonema coiling is conserved in eukaryotes. Plant J 2023. [PMID: 37840457 DOI: 10.1111/tpj.16484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 09/07/2023] [Accepted: 09/13/2023] [Indexed: 10/17/2023]
Abstract
Efficient chromatin condensation is required to transport chromosomes during mitosis and meiosis, forming daughter cells. While it is well accepted that these processes follow fundamental rules, there has been a controversial debate for more than 140 years on whether the higher-order chromatin organization in chromosomes is evolutionarily conserved. Here, we summarize historical and recent investigations based on classical and modern methods. In particular, classical light microscopy observations based on living, fixed, and treated chromosomes covering a wide range of plant and animal species, and even in single-cell eukaryotes suggest that the chromatids of large chromosomes are formed by a coiled chromatin thread, named the chromonema. More recently, these findings were confirmed by electron and super-resolution microscopy, oligo-FISH, molecular interaction data, and polymer simulation. Altogether, we describe common and divergent features of coiled chromonemata in different species. We hypothesize that chromonema coiling in large chromosomes is a fundamental feature established early during the evolution of eukaryotes to handle increasing genome sizes.
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Affiliation(s)
- Amanda Souza Câmara
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, D-06466, Seeland, Germany
| | - Ivona Kubalová
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, D-06466, Seeland, Germany
| | - Veit Schubert
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, D-06466, Seeland, Germany
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19
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Shiko G, Paulmann MJ, Feistel F, Ntefidou M, Hermann-Ene V, Vetter W, Kost B, Kunert G, Zedler JAZ, Reichelt M, Oelmüller R, Klein J. Occurrence and conversion of progestogens and androgens are conserved in land plants. New Phytol 2023; 240:318-337. [PMID: 37559351 DOI: 10.1111/nph.19163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 06/28/2023] [Indexed: 08/11/2023]
Abstract
Progestogens and androgens have been found in many plants, but little is known about their biosynthesis and the evolution of steroidogenesis in these organisms. Here, we show that the occurrence and biosynthesis of progestogens and androgens are conserved across the viridiplantae lineage. An UHPLC-ESI-MS/MS method allowed high-throughput analysis of the occurrence and chemical conversion of progestogens and androgens in 41 species across the green plant lineage. Dehydroepiandrosterone, testosterone, and 5α-dihydrotestosterone are plants' most abundant mammalian-like steroids. Progestogens are converted into 17α-hydroxyprogesterone and 5α-pregnane-3,20-dione. Androgens are converted into testosterone and 5α-dihydrotestosterone. 17,20-Lyases, essential for converting progestogens to androgens, seem to be most effective in monocot species. Our data suggest that the occurrence of progestogens and androgens is highly conserved in plants, and their biosynthesis might favor a route using the Δ4 pathway.
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Affiliation(s)
- Glendis Shiko
- Department of Plant Physiology, Matthias-Schleiden-Institute for Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University Jena, Jena, 07743, Germany
| | - Max-Jonas Paulmann
- Department of Plant Physiology, Matthias-Schleiden-Institute for Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University Jena, Jena, 07743, Germany
| | - Felix Feistel
- Department for Biochemistry, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Maria Ntefidou
- Cell Biology, Department of Biology, University Erlangen-Nuremberg, 91058, Erlangen, Germany
| | - Vanessa Hermann-Ene
- Institute of Food Chemistry, University of Hohenheim, 70599, Stuttgart, Germany
| | - Walter Vetter
- Institute of Food Chemistry, University of Hohenheim, 70599, Stuttgart, Germany
| | - Benedikt Kost
- Cell Biology, Department of Biology, University Erlangen-Nuremberg, 91058, Erlangen, Germany
| | - Grit Kunert
- Department for Biochemistry, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Julie A Z Zedler
- Synthetic Biology of Photosynthetic Organisms, Matthias Schleiden Institute for Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University Jena, 07743, Jena, Germany
| | - Michael Reichelt
- Department for Biochemistry, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Ralf Oelmüller
- Department of Plant Physiology, Matthias-Schleiden-Institute for Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University Jena, Jena, 07743, Germany
| | - Jan Klein
- Department of Plant Physiology, Matthias-Schleiden-Institute for Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University Jena, Jena, 07743, Germany
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20
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Sinha N, Zahra T, Gahane AY, Rout B, Bhattacharya A, Basu S, Chakrabarti A, Thakur AK. Protein reservoirs of seeds are amyloid composites employed differentially for germination and seedling emergence. Plant J 2023; 116:329-346. [PMID: 37675599 DOI: 10.1111/tpj.16429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 07/15/2023] [Accepted: 08/07/2023] [Indexed: 09/08/2023]
Abstract
Seed protein localization in seed storage protein bodies (SSPB) and their significance in germination are well recognized. SSPB are spherical and contain an assembly of water-soluble and salt-soluble proteins. Although the native structures of some SSPB proteins are explored, their structural arrangement to the functional correlation in SSPB remains unknown. SSPB are morphologically analogous to electron-dense amyloid-containing structures reported in other organisms. Here, we show that wheat, mungbean, barley, and chickpea SSPB exhibit a speckled pattern of amyloids interspersed in an amyloid-like matrix along with native structures, suggesting the composite nature of SSPB. This is confirmed by multispectral imaging methods, electron microscopy, infrared, and X-ray diffraction analysis, using in situ tissue sections, ex vivo protoplasts, and in vitro SSPB. Laser capture microdissection coupled with peptide fingerprinting has shown that globulin 1 and 3 in wheat, and 8S globulin and conglycinin in mungbean are the major amyloidogenic proteins. The amyloid composites undergo a sustained degradation during germination and seedling growth, facilitated by an intricate interplay of plant hormones and proteases. These results would lay down the foundation for understanding the amyloid composite structure during SSPB biogenesis and its evolution across the plant kingdom and have implications in both basic and applied plant biology.
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Affiliation(s)
- Nabodita Sinha
- Department of Biological Sciences and Bioengineering, The Mehta Family Centre For Engineering in Medicine, Indian Institute of Technology, Kanpur, Uttar Pradesh, 208016, India
| | - Talat Zahra
- Department of Biological Sciences and Bioengineering, The Mehta Family Centre For Engineering in Medicine, Indian Institute of Technology, Kanpur, Uttar Pradesh, 208016, India
| | - Avinash Yashwant Gahane
- Department of Biological Sciences and Bioengineering, The Mehta Family Centre For Engineering in Medicine, Indian Institute of Technology, Kanpur, Uttar Pradesh, 208016, India
| | - Bandita Rout
- Department of Biological Sciences and Bioengineering, The Mehta Family Centre For Engineering in Medicine, Indian Institute of Technology, Kanpur, Uttar Pradesh, 208016, India
| | | | | | | | - Ashwani Kumar Thakur
- Department of Biological Sciences and Bioengineering, The Mehta Family Centre For Engineering in Medicine, Indian Institute of Technology, Kanpur, Uttar Pradesh, 208016, India
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21
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Khan WA, Penrose B, Shabala S, Zhang X, Cao F, Zhou M. Mapping QTL for Mineral Accumulation and Shoot Dry Biomass in Barley under Different Levels of Zinc Supply. Int J Mol Sci 2023; 24:14333. [PMID: 37762635 PMCID: PMC10532338 DOI: 10.3390/ijms241814333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 09/14/2023] [Accepted: 09/18/2023] [Indexed: 09/29/2023] Open
Abstract
Zinc (Zn) deficiency is a common limiting factor in agricultural soils, which leads to significant reduction in both the yield and nutritional quality of agricultural produce. Exploring the quantitative trait loci (QTL) for shoot and grain Zn accumulation would help to develop new barley cultivars with greater Zn accumulation efficiency. In this study, two glasshouse experiments were conducted by growing plants under adequate and low Zn supply. From the preliminary screening of ten barley cultivars, Sahara (0.05 mg/pot) and Yerong (0.06 mg/pot) showed the lowest change in shoot Zn accumulation, while Franklin (0.16 mg/pot) had the highest change due to changes in Zn supply for plant growth. Therefore, the double haploid (DH) population derived from Yerong × Franklin was selected to identify QTL for shoot mineral accumulation and biomass production. A major QTL hotspot was detected on chromosome 2H between 31.91 and 73.12 cM encoding genes for regulating shoot mineral accumulations of Zn, Fe, Ca, K and P, and the biomass. Further investigation demonstrated 16 potential candidate genes for mineral accumulation, in addition to a single candidate gene for shoot biomass in the identified QTL region. This study provides a useful resource for enhancing nutritional quality and yield potential in future barley breeding programs.
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Affiliation(s)
- Waleed Amjad Khan
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7001, Australia; (W.A.K.); (B.P.); (S.S.)
| | - Beth Penrose
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7001, Australia; (W.A.K.); (B.P.); (S.S.)
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7001, Australia; (W.A.K.); (B.P.); (S.S.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China
| | - Xueqing Zhang
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Fangbin Cao
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7001, Australia; (W.A.K.); (B.P.); (S.S.)
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22
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Ellouzi H, Zorrig W, Amraoui S, Oueslati S, Abdelly C, Rabhi M, Siddique KHM, Hessini K. Seed Priming with Salicylic Acid Alleviates Salt Stress Toxicity in Barley by Suppressing ROS Accumulation and Improving Antioxidant Defense Systems, Compared to Halo- and Gibberellin Priming. Antioxidants (Basel) 2023; 12:1779. [PMID: 37760082 PMCID: PMC10525609 DOI: 10.3390/antiox12091779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 09/11/2023] [Accepted: 09/12/2023] [Indexed: 09/29/2023] Open
Abstract
Plants are highly sensitive to various environmental stresses, which can hinder their growth and reduce yields. In this study, we investigated the potential of seed priming with salicylic acid (SA), gibberellic acid (GA3), and sodium chloride (NaCl) to mitigate the adverse effects of salinity stress in Hordeum vulgare at the germination and early seedling stages. Exposing H. vulgare seeds to salt stress reduced the final germination percentage and seedling shoot and root growth. Interestingly, all seed treatments significantly improved salt-induced responses, with GA3 being more effective in terms of germination performance, plant growth, and photosynthesis. SA priming exhibited promising effects on antioxidant defense mechanisms, proline, sugar, and ascorbic acid production. Notably, SA priming also suppressed reactive oxygen species accumulation and prevented lipid peroxidation. These findings highlight the ability of SA to manage crosstalk within the seed, coordinating many regulatory processes to support plant adaptation to salinity stress.
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Affiliation(s)
- Hasna Ellouzi
- Laboratory of Extremophile Plants, Centre of Biotechnology of Borj-Cedria (CBBC), BP901, Hammam-Lif 2050, Tunisia; (H.E.); (W.Z.); (S.A.); (S.O.); (C.A.)
| | - Walid Zorrig
- Laboratory of Extremophile Plants, Centre of Biotechnology of Borj-Cedria (CBBC), BP901, Hammam-Lif 2050, Tunisia; (H.E.); (W.Z.); (S.A.); (S.O.); (C.A.)
| | - Souhir Amraoui
- Laboratory of Extremophile Plants, Centre of Biotechnology of Borj-Cedria (CBBC), BP901, Hammam-Lif 2050, Tunisia; (H.E.); (W.Z.); (S.A.); (S.O.); (C.A.)
| | - Samia Oueslati
- Laboratory of Extremophile Plants, Centre of Biotechnology of Borj-Cedria (CBBC), BP901, Hammam-Lif 2050, Tunisia; (H.E.); (W.Z.); (S.A.); (S.O.); (C.A.)
| | - Chedly Abdelly
- Laboratory of Extremophile Plants, Centre of Biotechnology of Borj-Cedria (CBBC), BP901, Hammam-Lif 2050, Tunisia; (H.E.); (W.Z.); (S.A.); (S.O.); (C.A.)
| | - Mokded Rabhi
- Department of Plant Production and Protection, College of Agriculture and Veterinary Medicine, Qassim University, Buraydah 51452, Saudi Arabia;
| | - Kadambot H. M. Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA 6001, Australia;
| | - Kamel Hessini
- Department of Biology, College of Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
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23
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Visioni A, Basile B, Amri A, Sanchez-Garcia M, Corrado G. Advancing the Conservation and Utilization of Barley Genetic Resources: Insights into Germplasm Management and Breeding for Sustainable Agriculture. Plants (Basel) 2023; 12:3186. [PMID: 37765350 PMCID: PMC10535687 DOI: 10.3390/plants12183186] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 08/30/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023]
Abstract
Barley is a very important crop particularly in marginal dry areas, where it often serves as the most viable option for farmers. Additionally, barley carries great significance in the Western world, serving not only as a fundamental crop for animal feed and malting but also as a nutritious food source. The broad adaptability of barley and its ability to withstand various biotic and abiotic stresses often make this species the sole cereal that can be cultivated in arid regions. The collection and utilization of barley genetic resources are crucial for identifying valuable traits to enhance productivity and mitigate the adverse effects of climate change. This review aims to provide an overview of the management and exploitation of barley genetic resources. Furthermore, the review explores the relationship between gene banks and participatory breeding, offering insights into the diversity and utilization of barley genetic resources through some examples such as the initiatives undertaken by ICARDA. Finally, this contribution highlights the importance of these resources for boosting barley productivity, addressing climate change impacts, and meeting the growing food demands in a rapidly changing agriculture. The understanding and utilizing the rich genetic diversity of barley can contribute to sustainable agriculture and ensure the success of this vital crop for future generations globally.
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Affiliation(s)
- Andrea Visioni
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat 10100, Morocco; (A.A.); (M.S.-G.)
| | - Boris Basile
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy;
| | - Ahmed Amri
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat 10100, Morocco; (A.A.); (M.S.-G.)
| | - Miguel Sanchez-Garcia
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat 10100, Morocco; (A.A.); (M.S.-G.)
| | - Giandomenico Corrado
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy;
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24
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Amer HEA, AbdElgawad H, Madany MMY, Khalil AMA, Saleh AM. Soil Contamination with Europium Induces Reduced Oxidative Damage in Hordeum vulgare Grown in a CO 2-Enriched Environment. Plants (Basel) 2023; 12:3159. [PMID: 37687405 PMCID: PMC10490371 DOI: 10.3390/plants12173159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 08/18/2023] [Accepted: 08/23/2023] [Indexed: 09/10/2023]
Abstract
The extensive and uncontrolled utilization of rare earth elements, like europium (Eu), could lead to their accumulation in soils and biota. Herein, we investigated the impact of Eu on the growth, photosynthesis, and redox homeostasis in barley and how that could be affected by the future CO2 climate (eCO2). The plants were exposed to 1.09 mmol Eu3+/kg soil under either ambient CO2 (420 ppm, aCO2) or eCO2 (620 ppm). The soil application of Eu induced its accumulation in the plant shoots and caused significant reductions in biomass- and photosynthesis-related parameters, i.e., chlorophyll content, photochemical efficiency of PSII, Rubisco activity, and photosynthesis rate. Further, Eu induced oxidative stress as indicated by higher levels of H2O2 and lipid peroxidation products, and lower ASC/DHA and GSH/GSSG ratios. Interestingly, the co-application of eCO2 significantly reduced the accumulation of Eu in plant tissues. Elevated CO2 reduced the Eu-induced oxidative damage by supporting the antioxidant defense mechanisms, i.e., ROS-scavenging molecules (carotenoids, flavonoids, and polyphenols), enzymes (CAT and peroxidases), and ASC-GSH recycling enzymes (MDHAR and GR). Further, eCO2 improved the metal detoxification capacity by upregulating GST activity. Overall, these results provide the first comprehensive report for Eu-induced oxidative phytotoxicity and how this could be mitigated by eCO2.
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Affiliation(s)
- Hanaa E. A. Amer
- Botany and Microbiology Department, Faculty of Science, University of Cairo, Giza 12613, Egypt;
| | - Hamada AbdElgawad
- Integrated Molecular Plant Physiology Research, Department of Biology, University of Antwerp, B–2020 Antwerp, Belgium;
- Department of Botany and microbiology, Faculty of Science, Beni-Suef University, Beni-Suef 62511, Egypt
| | - Mahmoud M. Y. Madany
- Biology Department, Faculty of Science, Taibah University, Al-Madinah Al-Munawarah 41411, Saudi Arabia;
| | - Ahmed M. A. Khalil
- Biology Department, Faculty of Science at Yanbu, Taibah University, King Khalid Rd., Al Amoedi, Yanbu El-Bahr 46423, Saudi Arabia;
| | - Ahmed M. Saleh
- Biology Department, Faculty of Science at Yanbu, Taibah University, King Khalid Rd., Al Amoedi, Yanbu El-Bahr 46423, Saudi Arabia;
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25
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Turck D, Aguilera‐Gómez M, Bohn T, Castenmiller J, De Henauw S, Hirsch‐Ernst KI, Maciuk A, Mangelsdorf I, McArdle HJ, Naska A, Pelaez C, Pentieva K, Siani A, Thies F, Tsabouri S, Vinceti M, Cubadda F, Frenzel T, Heinonen M, Prieto Maradona M, Marchelli R, Neuhäuser‐Berthold M, Poulsen M, Siskos A, Schlatter JR, van Loveren H, Zakidou P, Mendes V, Ververis E, Knutsen HK. Safety of partially hydrolysed protein from spent barley ( Hordeum vulgare) and rice ( Oryza sativa) as a novel food pursuant to Regulation (EU) 2015/2283. EFSA J 2023; 21:e08064. [PMID: 37663172 PMCID: PMC10472215 DOI: 10.2903/j.efsa.2023.8064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2023] Open
Abstract
Following a request from the European Commission, the EFSA Panel on Nutrition, Novel Foods and Food Allergens (NDA) was asked to deliver an opinion on partially hydrolysed protein from spent barley (Hordeum vulgare) and rice (Oryza sativa) as a novel food (NF) pursuant to Regulation (EU) 2015/2283. The NF is produced by enzymatically treating the pasteurised spent barley and rice residues of the mash step of beer production. Several mechanical treatment steps of the partial hydrolysate are employed to obtain the final product. The NF consists mainly of partially-hydrolysed proteins from spent barley and rice and it is in powdered form. The Panel notes that there are no safety concerns regarding the stability of the NF if the NF complies with the proposed specification limits during its entire shelf life of 15 months. The NF is proposed to be used as an ingredient in various foods such as dairy products, bakery products, pasta, fruit and vegetable spreads, snacks, and single meal replacements for weight reduction. The target population is the general population. Considering protein quality aspects, the Panel concludes that the NF is not a suitable protein source for the nutrition of infants. The Panel notes that, considering the composition of the NF, the proposed conditions of use and that the NF will not be the sole source of dietary protein, the consumption of the NF is not nutritionally disadvantageous. Taking into account the production process, the extensive compositional characterisation of the NF and the history of use of the source the Panel considers that no toxicological studies are required on the NF. Moreover, the Panel considers that the NF has the potential capacity to sensitise individuals and to induce allergic reactions in individuals allergic to barley and rice. With the exception of possible allergenicity, the Panel concludes that the NF is safe under the proposed uses and use levels.
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26
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Iqbal R, Azhar I, Iqbal MN, Hamid I, Zahoor M, Akhtar MF, Mahmood ZA, Ullah R, Alotaibi A. Chemical characterization, antioxidant and antidiabetic activities of a novel polyherbal formulation comprising of Hordeum vulgare, Elettaria cardamomum and Cicer arietinum extracts. Heliyon 2023; 9:e19292. [PMID: 37662785 PMCID: PMC10474433 DOI: 10.1016/j.heliyon.2023.e19292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 08/02/2023] [Accepted: 08/17/2023] [Indexed: 09/05/2023] Open
Abstract
Diabetes mellitus (DM) is the most prevalent endocrine disorder. Numerous individual herbs possess anti-diabetic activity. The seeds of Hordeum vulgare, Elettaria cardamomum and Cicer arietinum are traditionally used to manage DM. The ambition of this work was to formulate the poly-herbal granules (PHGs) comprising of these three functional foods and evaluate their in-vitro antioxidant and antidiabetic potential. The dried seed extracts of Hordeum vulgare, Elettaria cardamomum and Cicer arietinum were used in a ratio of 2.5:1:1 to formulate PHGs by wet granulation method. The ratio of extracts was selected on the basis of traditional phytotherapies popularly used by local Hakeems of Pakistan to achieve glycemic control in diabetic patients resistant to traditional allopathic regime of medicine. The flow properties of developed PHGs were evaluated. The UV-Visible spectroscopic, Fourier Transform Infrared (FTIR) and HPLC-DAD of all seed extracts and PHGs were performed. The in-vitro antioxidant DPPH, FRAP, total antioxidant capacity (TAC) and Nitric Oxide (NO) scavenging assays were carried out on PHGs. The in-vitro antidiabetic activity of PHGs was investigated by alpha-amylase and alpha-glucosidase enzyme inhibition activity. The developed PHGs exhibited excellent flow properties. The UV-Vis spectra of all seed extracts and PHGs demonstrated peak at 278 nm showing the presence of flavonoids and phenols. The FTIR spectra confirmed the existence of flavonoids, and phenols along with amines in seed extracts as well as PHGs. The HPLC-DAD test revealed the existence of gallic acid, ascorbic acid, Quercetin-3-(caffeoyldiglucoside)-7-glucoside, Rosmarinic acid, delphinidin-3,5-diglucosides, Kaempferol-3-feruloylsophoroside-7-glucoside and Phloroglucinol in PHGs. The PHGs exhibited IC50 of 51.23, 58.57, 55.41 and 53.13 μg/mL in DPPH assay, FRAP assay, TAC, Nitric oxide scavenging assays respectively. The PHGs also demonstrated IC50 of 49.97 and 36.16 μg/mL in alpha-amylase and in alpha-glucosidase inhibition assays respectively in dose dependent manner. The developed PHGs exhibited an excellent flow property. These exhibit significant in-vitro antioxidant and antidiabetic profile by virtue of flavonoid and phenolic acid derivatives.
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Affiliation(s)
- Rabia Iqbal
- Department of Pharmacognosy, Faculty of Pharmacy and Pharmaceutical Sciences, University of Karachi, Karachi, Pakistan
| | - Iqbal Azhar
- Department of Pharmacognosy, Faculty of Pharmacy and Pharmaceutical Sciences, University of Karachi, Karachi, Pakistan
| | | | - Irfan Hamid
- Cadson College of Pharmacy, Kharian, University of the Punjab, Lahore, Pakistan
| | - Muhammad Zahoor
- Department of Biochemistry, University of Malakand, Dir Lower, 18800, Khyber Pakhtunkhwa, Pakistan
| | - Muhammad Furqan Akhtar
- Riphah Institute of Pharmaceutical Sciences, Riphah International University, Lahore Campus, Pakistan
| | - Zafar Alam Mahmood
- Department of Pharmacognosy, Faculty of Pharmacy and Pharmaceutical Sciences, University of Karachi, Karachi, Pakistan
| | - Riaz Ullah
- Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Amal Alotaibi
- Department of Basic Sciences, College of Medicine, Princess Nourah Bint Abdul rahman University, Riyadh, 11671, Saudi Arabia
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27
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Miricescu A, Brazel AJ, Beegan J, Wellmer F, Graciet E. Transcriptional analysis in multiple barley varieties identifies signatures of waterlogging response. Plant Direct 2023; 7:e518. [PMID: 37577136 PMCID: PMC10422865 DOI: 10.1002/pld3.518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 07/17/2023] [Accepted: 07/18/2023] [Indexed: 08/15/2023]
Abstract
Waterlogging leads to major crop losses globally, particularly for waterlogging-sensitive crops such as barley. Waterlogging reduces oxygen availability and results in additional stresses, leading to the activation of hypoxia and stress response pathways that promote plant survival. Although certain barley varieties have been shown to be more tolerant to waterlogging than others and some tolerance-related quantitative trait loci have been identified, the molecular mechanisms underlying this trait are mostly unknown. Transcriptomics approaches can provide very valuable information for our understanding of waterlogging tolerance. Here, we surveyed 21 barley varieties for the differential transcriptional activation of conserved hypoxia-response genes under waterlogging and selected five varieties with different levels of induction of core hypoxia-response genes. We further characterized their phenotypic response to waterlogging in terms of shoot and root traits. RNA sequencing to evaluate the genome-wide transcriptional responses to waterlogging of these selected varieties led to the identification of a set of 98 waterlogging-response genes common to the different datasets. Many of these genes are orthologs of the so-called "core hypoxia response genes," thus highlighting the conservation of plant responses to waterlogging. Hierarchical clustering analysis also identified groups of genes with intrinsic differential expression between varieties prior to waterlogging stress. These genes could constitute interesting candidates to study "predisposition" to waterlogging tolerance or sensitivity in barley.
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Affiliation(s)
- Alexandra Miricescu
- Department of BiologyMaynooth UniversityMaynoothIreland
- Pesticide Registration DivisionDepartment of Agriculture, Food and the Marine, Backweston CampusCelbridgeIreland
| | | | - Joseph Beegan
- Smurfit Institute of GeneticsTrinity College DublinDublinIreland
| | - Frank Wellmer
- Smurfit Institute of GeneticsTrinity College DublinDublinIreland
| | - Emmanuelle Graciet
- Department of BiologyMaynooth UniversityMaynoothIreland
- Kathleen Lonsdale Institute for Human Health ResearchMaynooth UniversityMaynoothIreland
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Ost C, Cao HX, Nguyen TL, Himmelbach A, Mascher M, Stein N, Humbeck K. Drought-Stress-Related Reprogramming of Gene Expression in Barley Involves Differential Histone Modifications at ABA-Related Genes. Int J Mol Sci 2023; 24:12065. [PMID: 37569441 PMCID: PMC10418636 DOI: 10.3390/ijms241512065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 08/13/2023] Open
Abstract
Plants respond to drought by the major reprogramming of gene expression, enabling the plant to survive this threatening environmental condition. The phytohormone abscisic acid (ABA) serves as a crucial upstream signal, inducing this multifaceted process. This report investigated the drought response in barley plants (Hordeum vulgare, cv. Morex) at both the epigenome and transcriptome levels. After a ten-day drought period, during which the soil water content was reduced by about 35%, the relative chlorophyll content, as well as the photosystem II efficiency of the barley leaves, decreased by about 10%. Furthermore, drought-related genes such as HvS40 and HvA1 were already induced compared to the well-watered controls. Global ChIP-Seq analysis was performed to identify genes in which histones H3 were modified with euchromatic K4 trimethylation or K9 acetylation during drought. By applying stringent exclusion criteria, 129 genes loaded with H3K4me3 and 2008 genes loaded with H3K9ac in response to drought were identified, indicating that H3K9 acetylation reacts to drought more sensitively than H3K4 trimethylation. A comparison with differentially expressed genes enabled the identification of specific genes loaded with the euchromatic marks and induced in response to drought treatment. The results revealed that a major proportion of these genes are involved in ABA signaling and related pathways. Intriguingly, two members of the protein phosphatase 2C family (PP2Cs), which play a crucial role in the central regulatory machinery of ABA signaling, were also identified through this approach.
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Affiliation(s)
- Charlotte Ost
- Institute of Biology, Martin Luther University Halle-Wittenberg, Weinbergweg 10, 06120 Halle, Germany
| | - Hieu Xuan Cao
- Forest Genetics and Forest Tree Breeding, Georg-August University of Göttingen, 37077 Göttingen, Germany
| | - Thuy Linh Nguyen
- Institute of Biology, Martin Luther University Halle-Wittenberg, Weinbergweg 10, 06120 Halle, Germany
| | - Axel Himmelbach
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, Gatersleben, 06466 Seeland, Germany
| | - Martin Mascher
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, Gatersleben, 06466 Seeland, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Nils Stein
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, Gatersleben, 06466 Seeland, Germany
- Center of Integrated Breeding Research (CiBreed), Georg-August University of Göttingen, 37073 Göttingen, Germany
| | - Klaus Humbeck
- Institute of Biology, Martin Luther University Halle-Wittenberg, Weinbergweg 10, 06120 Halle, Germany
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Guo J, Beemster GTS, Liu F, Wang Z, Li X. Abscisic Acid Regulates Carbohydrate Metabolism, Redox Homeostasis and Hormonal Regulation to Enhance Cold Tolerance in Spring Barley. Int J Mol Sci 2023; 24:11348. [PMID: 37511108 PMCID: PMC10379442 DOI: 10.3390/ijms241411348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 07/02/2023] [Accepted: 07/06/2023] [Indexed: 07/30/2023] Open
Abstract
Abscisic acid (ABA) plays a vital role in the induction of low temperature tolerance in plants. To understand the molecular basis of this phenomenon, we performed a proteomic analysis on an ABA-deficit mutant barley (Az34) and its wild type (cv Steptoe) under control conditions (25/18 °C) and after exposure to 0 °C for 24 h. Most of the differentially abundant proteins were involved in the processes of photosynthesis and metabolisms of starch, sucrose, carbon, and glutathione. The chloroplasts in Az34 leaves were more severely damaged, and the decrease in Fv/Fm was larger in Az34 plants compared with WT under low temperature. Under low temperature, Az34 plants possessed significantly higher activities of ADP-glucose pyrophosphorylase, fructokinase, monodehydroascorbate reductase, and three invertases, but lower UDP-glucose pyrophosphorylase activity than WT. In addition, concentrations of proline and soluble protein were lower, while concentration of H2O2 was higher in Az34 plants compared to WT under low temperature. Collectively, the results indicated that ABA deficiency induced modifications in starch and sucrose biosynthesis and sucrolytic pathway and overaccumulation of reactive oxygen species were the main reason for depressed low temperature tolerance in barley, which provide novel insights to the response of barley to low temperature under future climate change.
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Affiliation(s)
- Junhong Guo
- Key Laboratory of Black Soil Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gerrit T S Beemster
- Laboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerpen, Belgium
| | - Fulai Liu
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Højbakkegård Allé 13, DK-2630 Tåstrup, Denmark
| | - Zongming Wang
- Key Laboratory of Black Soil Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Xiangnan Li
- Key Laboratory of Black Soil Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
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Zakhrabekova S, Chauhan P, Dockter C, Ealumalai P, Ivanova A, Jørgensen ME, Lu Q, Shoeva O, Werner K, Hansson M. Identification of a candidate dwarfing gene in Pallas, the first commercial barley cultivar generated through mutational breeding. Front Genet 2023; 14:1213815. [PMID: 37470037 PMCID: PMC10352844 DOI: 10.3389/fgene.2023.1213815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 06/07/2023] [Indexed: 07/21/2023] Open
Abstract
Many induced mutants are available in barley (Hordeum vulgare L.). One of the largest groups of induced mutants is the Erectoides (ert) mutants, which is characterized by a compact and upright spike and a shortened culm. One isolated mutant, ert-k.32, generated by X-ray treatment and registered in 1958 under the named "Pallas", was the first ever induced barley mutant to be released on the market. Its value was improved culm strength and enhanced lodging resistance. In this study, we aimed to identify the casual gene of the ert-k.32 mutant by whole genome sequencing of allelic ert-k mutants. The suggested Ert-k candidate gene, HORVU.MOREX.r3.6HG0574880, is located in the centromeric region of chromosome 6H. The gene product is an alpha/beta hydrolase with a catalytic triad in the active site composed of Ser-167, His-261 and Asp-232. In comparison to proteins derived from the Arabidopsis genome, ErtK is most similar to a thioesterase with de-S-acylation activity. This suggests that ErtK catalyzes post-translational modifications by removing fatty acids that are covalently attached to cysteine residues of target proteins involved in regulation of plant architecture and important commercial traits such as culm stability and lodging resistance.
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Affiliation(s)
| | | | | | | | - Anastasiia Ivanova
- Department of Biology, Lund University, Lund, Sweden
- Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway
| | | | - Qiongxian Lu
- Carlsberg Research Laboratory, Copenhagen, Denmark
| | - Olesya Shoeva
- Department of Biology, Lund University, Lund, Sweden
- Department of Plant Genetics,Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | | | - Mats Hansson
- Department of Biology, Lund University, Lund, Sweden
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Lemieszek MK, Rzeski W. Synergism of antiproliferative effects of young green barley and chlorella water extracts against human breast cancer cells. Ann Agric Environ Med 2023; 30:273-280. [PMID: 37387377 DOI: 10.26444/aaem/166267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]
Abstract
INTRODUCTION AND OBJECTIVE Breast cancer is the most common type of tumour in terms of incidence and mortality among women. In the light of recent data that has revealed the beneficial impact of increasing plant-based food consumption on the risk of breast cancer, the use of young green barley and chlorella, the chemopreventive properties of which have been previously reported, seems to be a reasonable therapeutic strategy in this type of cancer. Nevertheless, there are only a few scientific reports focused on the influence of the mentioned products on breast cancer development; thus, the aim of the study was to enrich knowledge resources in this area. MATERIAL AND METHODS The chemopreventive effect of water extracts of chlorella (CH) and young green barley (YGB) and their mixture (MIX) was investigated in human breast adenocarcinoma T47D cells and human skin fibroblasts HSF by LDH, MTT and BrdU assays. Changes in cell morphology in response to tested extracts were examined in light microscopy. RESULTS Tested extracts were not toxic against HSF and did not affect their proliferation and morphology. Simultaneously, extracts increased the permeability of T47D cell membranes and inhibited their proliferation. Microscopic observation confirmed the results of biochemical assays and additionally suggested necrosis induction in T47D cells in response to tested compounds. Obtained results demonstrated that MIX induced stronger beneficial changes than their components. CONCLUSIONS The study revealed the chemopreventive properties of the investigated green food products against breast cancer cells, without any side-effects in human skin fibroblasts. The beneficial properties discovered of the tested extracts on cancer cells enhanced by their concomitant administration, and in the case of antiproliferative effects YGB and CH, revealed synergism of action.
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Affiliation(s)
| | - Wojciech Rzeski
- Department of Medical Biology, Institute of Rural Health, Lublin, Poland
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Kaduchová K, Marchetti C, Ovečka M, Galuszka P, Bergougnoux V, Šamaj J, Pecinka A. Spatial organization and dynamics of chromosomes and microtubules during barley mitosis. Plant J 2023. [PMID: 37326283 DOI: 10.1111/tpj.16355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 05/28/2023] [Accepted: 06/07/2023] [Indexed: 06/17/2023]
Abstract
Mitosis and cytokinesis are fundamental processes through which somatic cells increase their numbers and allow plant growth and development. Here, we analyzed the organization and dynamics of mitotic chromosomes, nucleoli, and microtubules in living cells of barley root primary meristems using a series of newly developed stable fluorescent protein translational-fusion lines and time-lapse confocal microscopy. The median duration of mitosis from prophase until the end of telophase was 65.2 and 78.2 minutes until the end of cytokinesis. We showed that barley chromosomes frequently start condensation before mitotic preprophase as defined by the organization of microtubules, and maintain it even after entering into the new interphase. Furthermore, we found that the process of chromosome condensation does not finish at metaphase, but gradually continues until the end of mitosis. In summary, our study features resources for in vivo analysis of barley nuclei and chromosomes, and their dynamics during mitotic cell cycle.
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Affiliation(s)
- Kateřina Kaduchová
- Institute of Experimental Botany (IEB), Czech Acad Sci, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, Olomouc, 77900, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Cintia Marchetti
- Centre of the Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute (CATRIN), Palacký University, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Miroslav Ovečka
- Department of Biotechnology, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Petr Galuszka
- Department of Molecular Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Véronique Bergougnoux
- Centre of the Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute (CATRIN), Palacký University, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Jozef Šamaj
- Department of Biotechnology, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Ales Pecinka
- Institute of Experimental Botany (IEB), Czech Acad Sci, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, Olomouc, 77900, Czech Republic
- Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Šlechtitelů 27, 78371, Olomouc, Czech Republic
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Virág E, Kiniczky M, Kutasy B, Nagy Á, Pallos JP, Laczkó L, Freytag C, Hegedűs G. Supplementation of the Plant Conditioner ELICE Vakcina ® Product with β-Aminobutyric Acid and Salicylic Acid May Lead to Trans-Priming Signaling in Barley ( Hordeum vulgare). Plants (Basel) 2023; 12:2308. [PMID: 37375933 DOI: 10.3390/plants12122308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 06/07/2023] [Accepted: 06/09/2023] [Indexed: 06/29/2023]
Abstract
Plant immunological memory, priming, is a defense mechanism that can be triggered by external stimuli, leading to the activation of biochemical pathways and preparing plants for disease resistance. Plant conditioners improve yield and crop quality through nutrient efficiency and abiotic stress tolerance, which is enhanced by the addition of resistance- and priming-induced compounds. Based on this hypothesis, this study aimed to investigate plant responses to priming actives of different natures, including salicylic acid and beta-aminobutyric acid, in combination with the plant conditioning agent ELICE Vakcina®. Phytotron experiments and RNA-Seq analyses of differentially expressed genes using the combinations of these three investigated compounds were performed in a barley culture to investigate possible synergistic relationships in the genetic regulatory network. The results indicated a strong regulation of defense responses, which was enhanced by supplemental treatments; however, both synergistic and antagonistic effects were enhanced with one or two components, depending on the supplementation. The overexpressed transcripts were functionally annotated to assess their involvement in jasmonic acid and salicylic acid signaling; however, their determinant genes were highly dependent on the supplemental treatments. Although the effects overlapped, the potential effects of trans-priming the two supplements tested could be largely separated.
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Affiliation(s)
- Eszter Virág
- Research Institute for Medicinal Plants and Herbs Ltd., Lupaszigeti Str 4, 2011 Budakalász, Hungary
- EduCoMat Ltd., Iskola Str 12A, 8360 Keszthely, Hungary
- Institute of Metagenomics, University of Debrecen, Egyetem Square 1, 4032 Debrecen, Hungary
| | - Márta Kiniczky
- Research Institute for Medicinal Plants and Herbs Ltd., Lupaszigeti Str 4, 2011 Budakalász, Hungary
| | - Barbara Kutasy
- Department of Plant Physiology and Plant Ecology, Institute of Agronomy, Hungarian University of Agriculture and Life Sciences, Georgikon Campus, Festetics Str 7, 8360 Keszthely, Hungary
| | - Ágnes Nagy
- Research Institute for Medicinal Plants and Herbs Ltd., Lupaszigeti Str 4, 2011 Budakalász, Hungary
| | - József Péter Pallos
- Research Institute for Medicinal Plants and Herbs Ltd., Lupaszigeti Str 4, 2011 Budakalász, Hungary
| | - Levente Laczkó
- Institute of Metagenomics, University of Debrecen, Egyetem Square 1, 4032 Debrecen, Hungary
- ELKH-DE Conservation Biology Research Group, Egyetem Square, 4032 Debrecen, Hungary
| | - Csongor Freytag
- Institute of Metagenomics, University of Debrecen, Egyetem Square 1, 4032 Debrecen, Hungary
| | - Géza Hegedűs
- Research Institute for Medicinal Plants and Herbs Ltd., Lupaszigeti Str 4, 2011 Budakalász, Hungary
- EduCoMat Ltd., Iskola Str 12A, 8360 Keszthely, Hungary
- Institute of Metagenomics, University of Debrecen, Egyetem Square 1, 4032 Debrecen, Hungary
- Department of Information Technology and Its Applications, Faculty of Information Technology, University of Pannonia, Gasparich Márk Str 18/A, 8900 Zalaegerszeg, Hungary
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Paul M, Tanskanen J, Jääskeläinen M, Chang W, Dalal A, Moshelion M, Schulman AH. Drought and recovery in barley: key gene networks and retrotransposon response. Front Plant Sci 2023; 14:1193284. [PMID: 37377802 PMCID: PMC10291200 DOI: 10.3389/fpls.2023.1193284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 05/09/2023] [Indexed: 06/29/2023]
Abstract
Introduction During drought, plants close their stomata at a critical soil water content (SWC), together with making diverse physiological, developmental, and biochemical responses. Methods Using precision-phenotyping lysimeters, we imposed pre-flowering drought on four barley varieties (Arvo, Golden Promise, Hankkija 673, and Morex) and followed their physiological responses. For Golden Promise, we carried out RNA-seq on leaf transcripts before and during drought and during recovery, also examining retrotransposon BARE1expression. Transcriptional data were subjected to network analysis. Results The varieties differed by their critical SWC (ϴcrit), Hankkija 673 responding at the highest and Golden Promise at the lowest. Pathways connected to drought and salinity response were strongly upregulated during drought; pathways connected to growth and development were strongly downregulated. During recovery, growth and development pathways were upregulated; altogether, 117 networked genes involved in ubiquitin-mediated autophagy were downregulated. Discussion The differential response to SWC suggests adaptation to distinct rainfall patterns. We identified several strongly differentially expressed genes not earlier associated with drought response in barley. BARE1 transcription is strongly transcriptionally upregulated by drought and downregulated during recovery unequally between the investigated cultivars. The downregulation of networked autophagy genes suggests a role for autophagy in drought response; its importance to resilience should be further investigated.
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Affiliation(s)
- Maitry Paul
- HiLIFE Institute of Biotechnology, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre (ViPS), University of Helsinki, Helsinki, Finland
| | - Jaakko Tanskanen
- HiLIFE Institute of Biotechnology, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre (ViPS), University of Helsinki, Helsinki, Finland
- Production Systems, Natural Resources Institute Finland (LUKE), Helsinki, Finland
| | - Marko Jääskeläinen
- HiLIFE Institute of Biotechnology, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre (ViPS), University of Helsinki, Helsinki, Finland
| | - Wei Chang
- HiLIFE Institute of Biotechnology, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre (ViPS), University of Helsinki, Helsinki, Finland
| | - Ahan Dalal
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Menachem Moshelion
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Alan H. Schulman
- HiLIFE Institute of Biotechnology, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre (ViPS), University of Helsinki, Helsinki, Finland
- Production Systems, Natural Resources Institute Finland (LUKE), Helsinki, Finland
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Muria-Gonzalez MJ, Lawrence JA, Palmiero E, D'Souza NK, Gupta S, Ellwood SR. Major Susceptibility Gene Epistasis over Minor Gene Resistance to Spot Form Net Blotch in a Commercial Barley Cultivar. Phytopathology 2023; 113:1058-1065. [PMID: 37454241 DOI: 10.1094/phyto-10-22-0376-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/18/2023]
Abstract
Spot form net blotch, caused by Pyrenophora teres f. maculata, is a significant global disease of barley (Hordeum vulgare). Baudin, a barley cultivar that was until recently extensively grown in Western Australia, was reported as having minor seedling resistance. However, Baudin was highly susceptible to a local isolate, M3, suggesting that this isolate had gained virulence against a major susceptibility gene. M3 causes atypical lesions with pale centers early in the infection, with initial screens of a segregating population indicating that this was determined by a single locus in the Baudin genome. The susceptibility was semidominant in F1 progeny and the susceptibility gene, designated Spm1 (Susceptibility to P. teres f. maculata 1), mapped to a 190-kb section of the resistance gene-rich Mla region of chromosome 1H. Phenotyping with Ptm SP1, a non-M3 pathotype, identified a seedling resistance locus on 2H. Minor gene resistance is generally regarded as potentially durable, but our findings suggest the resistance to spot form net blotch in Baudin is nullified by strong susceptibility conferred by a separate locus on 1H. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Mariano Jordi Muria-Gonzalez
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Julie A Lawrence
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Elzette Palmiero
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Nola K D'Souza
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Sanjiv Gupta
- Western Barley Genetics Alliance, Western Australian State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
| | - Simon R Ellwood
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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Hamany Djande CY, Steenkamp PA, Piater LA, Tugizimana F, Dubery IA. Metabolic Reprogramming of Barley in Response to Foliar Application of Dichlorinated Functional Analogues of Salicylic Acid as Priming Agents and Inducers of Plant Defence. Metabolites 2023; 13:metabo13050666. [PMID: 37233707 DOI: 10.3390/metabo13050666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 05/12/2023] [Accepted: 05/15/2023] [Indexed: 05/27/2023] Open
Abstract
Designing innovative biological crop protection strategies to stimulate natural plant immunity is motivated by the growing need for eco-friendly alternatives to conventional biocidal agrochemicals. Salicylic acid (SA) and analogues are known chemical inducers of priming plant immunity against environmental stresses. The aim of the study was to study the metabolic reprogramming in barley plants following an application of three proposed dichlorinated inducers of acquired resistance. 3,5-Dichloroanthranilic acid, 2,6-dichloropyridine-4-carboxylic acid, and 3,5-dichlorosalicylic acid were applied to barley at the third leaf stage of development and harvested at 12, 24, and 36 h post-treatment. Metabolites were extracted using methanol for untargeted metabolomics analyses. Samples were analysed by ultra-high performance liquid chromatography coupled to high-definition mass spectrometry (UHPLC-HDMS). Chemometric methods and bioinformatics tools were used to mine and interpret the generated data. Alterations in the levels of both primary and secondary metabolites were observed. The accumulation of barley-specific metabolites, hordatines, and precursors was observed from 24 h post-treatment. The phenylpropanoid pathway, a marker of induced resistance, was identified among the key mechanisms activated by the treatment with the three inducers. No salicylic acid or SA derivatives were annotated as signatory biomarkers; instead, jasmonic acid precursors and derivatives were found as discriminatory metabolites across treatments. The study highlights differences and similarities in the metabolomes of barley after treatment with the three inducers and points to the triggering chemical changes associated with defence and resistance. This report is the first of its kind, and the knowledge acquired provides deeper insight into the role of dichlorinated small molecules as inducers of plant immunity and can be used in metabolomics-guided plant improvement programmes.
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Affiliation(s)
- Claude Y Hamany Djande
- Research Centre for Plant Metabolomics, Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, Johannesburg 2006, South Africa
| | - Paul A Steenkamp
- Research Centre for Plant Metabolomics, Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, Johannesburg 2006, South Africa
| | - Lizelle A Piater
- Research Centre for Plant Metabolomics, Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, Johannesburg 2006, South Africa
| | - Fidele Tugizimana
- Research Centre for Plant Metabolomics, Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, Johannesburg 2006, South Africa
| | - Ian A Dubery
- Research Centre for Plant Metabolomics, Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, Johannesburg 2006, South Africa
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37
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Panji A, Ismaili A, Sohrabi SM. Genome-wide identification and expression profiling of snakin/GASA genes under drought stress in barley ( Hordeum vulgare L.). 3 Biotech 2023; 13:126. [PMID: 37064004 PMCID: PMC10090255 DOI: 10.1007/s13205-023-03545-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 03/28/2023] [Indexed: 04/18/2023] Open
Abstract
Gibberellic Acid-Stimulated Arabidopsis (GASA) proteins are present in various plants and have a role in plant growth, stress responses, and hormone crosstalk. GASA coding sequences in barley were discovered in this study. We then investigated gene and protein structure, physicochemical characteristics, evolutionary and phylogenetic relationships, promoter region, post-translational modification, and in silico gene expression. Finally, real-time quantitative PCR (RT-qPCR) was used to examine the expression of GASA genes in root and shoot tissues under drought stress. We found 11 GASA genes spread across six of seven chromosomes in the barley genome. A conserved GASA domain and 12-cysteine residues at the C-terminus were included in the proteins. All GASA genes contained secretory signal peptides. The GASA genes in Hordeum vulgare (HvGASA) have been classified into three subfamilies based on evolutionary analysis. According to synteny analyses, segmental duplications are significant in forming the GASA gene family. According to the cis-elements analyses, GASA genes may be induced by a variety of phytohormones and stresses. Tissue-specific expression analysis indicated that GASA genes had varied expression patterns in different tissues. Contrary to common perception, the expression study of GASA genes under biotic and abiotic stresses revealed that GASA genes are more induced by abiotic stresses than biotic stresses. The qPCR confirmed the response of GASA genes to abiotic stresses and showed different expression patterns of these genes under drought stress. Overall, these results can improve our knowledge about the function of GASA genes and provide data for future researches. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-023-03545-8.
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Affiliation(s)
- Anahita Panji
- Department of Plant Production and Genetic Engineering, Faculty of Agriculture, Lorestan University, Khorramabad, Iran
| | - Ahmad Ismaili
- Department of Plant Production and Genetic Engineering, Faculty of Agriculture, Lorestan University, Khorramabad, Iran
| | - Seyyed Mohsen Sohrabi
- Department of Production Engineering and Plant Genetics, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
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Paniagua-López M, Aguilar-Garrido A, Contero-Hurtado J, García-Romera I, Sierra-Aragón M, Romero-Freire A. Ecotoxicological Assessment of Polluted Soils One Year after the Application of Different Soil Remediation Techniques. Toxics 2023; 11:298. [PMID: 37112525 PMCID: PMC10143980 DOI: 10.3390/toxics11040298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Revised: 03/21/2023] [Accepted: 03/22/2023] [Indexed: 06/19/2023]
Abstract
The present work evaluated the influence of eight different soil remediation techniques, based on the use of residual materials (gypsum, marble, vermicompost) on the reduction in metal(loid)s toxicity (Cu, Zn, As, Pb and Cd) in a polluted natural area. Selected remediation treatments were applied in a field exposed to real conditions and they were evaluated one year after the application. More specifically, five ecotoxicological tests were carried out using different organisms on either the solid or the aqueous (leachate) fraction of the amended soils. Likewise, the main soil properties and the total, water-soluble and bioavailable metal fractions were determined to evaluate their influence on soil toxicity. According to the toxicity bioassays performed, the response of organisms to the treatments differed depending on whether the solid or the aqueous fraction was used. Our results highlighted that the use of a single bioassay may not be sufficient as an indicator of toxicity pathways to select soil remediation methods, so that the joint determination of metal availability and ecotoxicological response will be determinant for the correct establishment of any remediation technique carried out under natural conditions. Our results indicated that, of the different treatments used, the best technique for the remediation of metal(loid)s toxicity was the addition of marble sludge with vermicompost.
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Affiliation(s)
- Mario Paniagua-López
- Departamento de Edafología y Química Agrícola, Faculty of Science, University of Granada, 18071 Granada, Spain; (A.A.-G.); (J.C.-H.); (M.S.-A.)
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas (EEZ-CSIC), 18008 Granada, Spain;
| | - Antonio Aguilar-Garrido
- Departamento de Edafología y Química Agrícola, Faculty of Science, University of Granada, 18071 Granada, Spain; (A.A.-G.); (J.C.-H.); (M.S.-A.)
| | - José Contero-Hurtado
- Departamento de Edafología y Química Agrícola, Faculty of Science, University of Granada, 18071 Granada, Spain; (A.A.-G.); (J.C.-H.); (M.S.-A.)
| | - Inmaculada García-Romera
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas (EEZ-CSIC), 18008 Granada, Spain;
| | - Manuel Sierra-Aragón
- Departamento de Edafología y Química Agrícola, Faculty of Science, University of Granada, 18071 Granada, Spain; (A.A.-G.); (J.C.-H.); (M.S.-A.)
| | - Ana Romero-Freire
- Departamento de Edafología y Química Agrícola, Faculty of Science, University of Granada, 18071 Granada, Spain; (A.A.-G.); (J.C.-H.); (M.S.-A.)
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Feng Q, Sehar S, Zhou F, Wei D, Askri SMH, Ma Z, Adil MF, Shamsi IH. Physiological and TMT-based quantitative proteomic responses of barley to aluminium stress under phosphorus-Piriformospora indica interaction. Plant Physiol Biochem 2023; 196:634-646. [PMID: 36791535 DOI: 10.1016/j.plaphy.2023.02.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 02/04/2023] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
Barley (Hordeum vulgare L.) is one of the most important cereal crop in the world, and is also the one being seriously affected by heavy metals, particularly aluminium (Al). Keeping in view the utility of barley as food, fodder and raw material for traditional beer brewing, the top-notch quality and higher production of this crop must be sustained. Phosphorus (P) has a quintessential role in plant growth with a potential to relieve symptoms caused by Al poisoning. Displaying a phytopromotive and stress alleviatory potential, Piriformospora indica (P. indica) can improve the stress tolerance in crops. Several studies have been conducted to evaluate the mechanism of Al translocation in a variety of crops including barley, however, the bio-remediative studies related to detoxification and/or sequestration of metals are scarce. Therefore, the current study was carried out to elucidate the tolerance mechanism of an Al-sensitive barley cultivar ZU9 following the colonization with P. indica and exogenous P supply by physio-biochemical, elemental, leaf ultrastructural and root proteome analyses. When compared to the Al alone treated counterparts, the Al + P + P.i treated plants exhibited 4.1-, 1.38-, 2.7 and 1.35-fold improved root and shoot fresh and dry weights, respectively. With the provision of additional phosphorus, the content of P in the root and shoot for Al + P + P.i group was reportedly higher (71.6% and 49.5%, respectively) as compared to the control group. Moreover, inoculation of P. indica combined with P improved barley leaves' cell arrangement and also maintained normal cell wall shape. The root protemics experiment was divided into three groups: Al, Al + P.i and Al + P + P.i. In total, 28, 598, and 823 differentially expressed proteins were found in Al + P.i vs. Al and Al + P + P.i vs. Al, and phenylpropanoid biosynthesis was the most prominently enriched pathway, which contributed significantly to the recuperating effects of P-P. indica interaction. Conslusively, it was found that the percentage of protein related to peroxidase was 70/359 (Al + P + P.i vs. Al) and 92/447 (Al + P + P.i vs. Al + P.i), respectively, which indicated that P. indica in combination with P might be involved in the regulation of peroxidases, increasing the adaptability of barley plants by enhanced reactive oxygen species (ROS) scavenging mechansism.
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Affiliation(s)
- Qidong Feng
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Shafaque Sehar
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Fanrui Zhou
- Department of Food Science and Nutrition, Zhejiang Key Laboratory for Agro-Food Processing, Zhejiang University, Hangzhou, 310058, China; Key Laboratory of State Forestry and Grassland Administration on Highly Efficient Utilization of Forestry Biomass Resources in Southwest China, College of Material and Chemical Engineering, Southwest Forestry University, Kunming, 650224, China
| | - Dongming Wei
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Syed Muhammad Hassan Askri
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Zhengxin Ma
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Muhammad Faheem Adil
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Imran Haider Shamsi
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
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Kusiak M, Sierocka M, Świeca M, Pasieczna-Patkowska S, Sheteiwy M, Jośko I. Unveiling of interactions between foliar-applied Cu nanoparticles and barley suffering from Cu deficiency. Environ Pollut 2023; 320:121044. [PMID: 36639040 DOI: 10.1016/j.envpol.2023.121044] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 11/09/2022] [Accepted: 01/06/2023] [Indexed: 06/17/2023]
Abstract
The objective of this study was to evaluate nano-Cu-plant interactions under Cu deficiency. Nano-Cu at rates of 100 and 1000 mg L-1 was applied as foliar spray to Hordeum vulgare L. during increased demand for nutrients at tillering stage. Corresponding treatment with CuSO4 was used to exam the nano-specific effects. Cu compounds-plant leaves interactions were analyzed with spectroscopic and microscopic methods (ICP-OES, FTIR/ATR, SEM-EDS). Moreover, the effect of Cu compounds on plants in terms of biomass, pigments content, lipid peroxidation, antiradical properties, the activity of enzymes involved in plant defense against stress (SOD, CAT, POD, GR, PAL, PPO) and the content of non-enzymatic antioxidants (GSH, GSSG, TPC) was determined after 1 and 7 days of exposure. Cu loading to plant leaves increased over time, but the content of Cu under treatment with nano-Cu at 100 mg L-1 was lower by 76% than CuSO4 at 7th day of exposure. The changes induced by applied Cu compounds in biochemical traits were mostly observed after 1 day. Our data showed that CuSO4 exposure induce oxidative stress (increased MDA level and GSSG content) when compared to control and nano-Cu treated plants. Noteworthy, nano Cu at 100 mg L-1 demonstrated enhanced stress tolerance as indicated by boosted GSH content. After 7 days, the antioxidant response was almost same compared to control sample. However, based on other indicators (pigment content, chlorosis sign, biomass), it should be noted that CuSO4 caused serve oxidative burst of plant which may resulted in damage of defense system. Nano-Cu, especially at 100 mg L-1, showed promising effect on plant health, and obtained results may be useful for optimizing of nano-Cu application as fertilizer agent.
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Affiliation(s)
- Magdalena Kusiak
- Institute of Plant Genetics, Breeding and Biotechnology, Faculty of Agrobioengineering, University of Life Sciences, Lublin, Poland
| | - Małgorzata Sierocka
- Department of Biochemistry and Food Chemistry, Faculty of Food Science and Biotechnology, University of Life Sciences, Lublin, Poland
| | - Michał Świeca
- Department of Biochemistry and Food Chemistry, Faculty of Food Science and Biotechnology, University of Life Sciences, Lublin, Poland
| | - Sylwia Pasieczna-Patkowska
- Department of Chemical Technology, Faculty of Chemistry, Maria Curie-Skłodowska University, Lublin, Poland
| | - Mohamed Sheteiwy
- Department of Agronomy, Faculty of Agriculture, Mansoura University, Mansoura, Egypt
| | - Izabela Jośko
- Institute of Plant Genetics, Breeding and Biotechnology, Faculty of Agrobioengineering, University of Life Sciences, Lublin, Poland.
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Eid O, Elkady WM, Ezzat S, El Sayed A, Abd Elsattar E. Comprehensive Overview: The Effect of Using Different Solvents for Barley Extraction with Its Anti-Inflammatory and Antioxidant Activity. Chem Biodivers 2023; 20:e202200935. [PMID: 36730630 DOI: 10.1002/cbdv.202200935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 02/02/2023] [Accepted: 02/02/2023] [Indexed: 02/04/2023]
Abstract
Barley (Hordeum vulgare L.) is one of the world's oldest cereal crops. There is considerable interest in barley's potential usage in human diets. Barley is rich in bioactive metabolites such as high content of β-glucan, fiber, and vitamin E. It is also well-known as a rich source of phytochemical derivatives, namely, phenolic acids, flavonols, chalcones, flavones, proanthocyanidins, and flavanones. Phenolic compounds are recognized as excellent dietary materials with antioxidant and anti-inflammatory activities. This review was written to give an overview of the main components that are separated from barley using different solvents. Even though there were numerous biological activities for barely, the antioxidant, as well as the anti-inflammatory, are the main focus of this review.
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Affiliation(s)
- Omneya Eid
- Department of Pharmacognosy and medicinal plants, Faculty of Pharmacy, Future University in Egypt, 12311, Cairo, Egypt
| | - Wafaa M Elkady
- Department of Pharmacognosy and medicinal plants, Faculty of Pharmacy, Future University in Egypt, 12311, Cairo, Egypt
| | - Shahira Ezzat
- Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, 11562, Cairo, Egypt
- Pharmacognosy Department, Faculty of Pharmacy, October University for Modern Science and Arts (MSA), 6th October, 12451, Egypt
| | - Abeer El Sayed
- Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, 11562, Cairo, Egypt
| | - Essam Abd Elsattar
- Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, 11562, Cairo, Egypt
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Ziems LA, Singh L, Dracatos PM, Dieters MJ, Sanchez-Garcia M, Amri A, Verma RPS, Park RF, Singh D. Characterization of Leaf Rust Resistance in International Barley Germplasm Using Genome-Wide Association Studies. Plants (Basel) 2023; 12:862. [PMID: 36840210 PMCID: PMC9963359 DOI: 10.3390/plants12040862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 02/09/2023] [Accepted: 02/11/2023] [Indexed: 06/18/2023]
Abstract
A panel of 114 genetically diverse barley lines were assessed in the greenhouse and field for resistance to the pathogen Puccinia hordei, the causal agent of barley leaf rust. Multi-pathotype tests revealed that 16.6% of the lines carried the all-stage resistance (ASR) gene Rph3, followed by Rph2 (4.4%), Rph1 (1.7%), Rph12 (1.7%) or Rph19 (1.7%). Five lines (4.4%) were postulated to carry the gene combinations Rph2+9.am, Rph2+19 and Rph8+19. Three lines (2.6%) were postulated to carry Rph15 based on seedling rust tests and genotyping with a marker linked closely to this gene. Based on greenhouse seedling tests and adult-plant field tests, 84 genotypes (73.7%) were identified as carrying APR, and genotyping with molecular markers linked closely to three known APR genes (Rph20, Rph23 and Rph24) revealed that 48 of the 84 genotypes (57.1%) likely carry novel (uncharacterized) sources of APR. Seven lines were found to carry known APR gene combinations (Rph20+Rph23, Rph23+Rph24 and Rph20+Rph24), and these lines had higher levels of field resistance compared to those carrying each of these three APR genes singly. GWAS identified 12 putative QTLs; strongly associated markers located on chromosomes 1H, 2H, 3H, 5H and 7H. Of these, the QTL on chromosome 7H had the largest effect on resistance response to P. hordei. Overall, these studies detected several potentially novel genomic regions associated with resistance. The findings provide useful information for breeders to support the utilization of these sources of resistance to diversify resistance to leaf rust in barley and increase resistance durability.
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Affiliation(s)
- Laura A. Ziems
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2570, Australia
| | - Lovepreet Singh
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2570, Australia
| | - Peter M. Dracatos
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2570, Australia
- Department of Animal, Plant and Soil Sciences, AgriBio, La Trobe University, Bundoora, VIC 3086, Australia
| | - Mark J. Dieters
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane, QLD 4067, Australia
| | - Miguel Sanchez-Garcia
- International Centre for Agriculture Research in Dry Areas (ICARDA), Rabat 10170, Morocco
| | - Ahmed Amri
- International Centre for Agriculture Research in Dry Areas (ICARDA), Rabat 10170, Morocco
| | - Ramesh Pal Singh Verma
- International Centre for Agriculture Research in Dry Areas (ICARDA), Rabat 10170, Morocco
- Indian Institute of Wheat and Barley Research, Karnal 132001, India
| | - Robert F. Park
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2570, Australia
| | - Davinder Singh
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2570, Australia
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Guo J, Li S, Brestic M, Li N, Zhang P, Liu L, Li X. Modulations in protein phosphorylation explain the physiological responses of barley ( Hordeum vulgare) to nanoplastics and ZnO nanoparticles. J Hazard Mater 2023; 443:130196. [PMID: 36272376 DOI: 10.1016/j.jhazmat.2022.130196] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 10/12/2022] [Accepted: 10/12/2022] [Indexed: 06/16/2023]
Abstract
To address the knowledge gap on the effects of the co-existence of nanomaterials on plant growth, barley (Hordeum vulgare L.) plants were irrigated with zinc oxide nanoparticles (0.5 g L-1), nanoplastics (1 g L-1), and the combination of these two nanomaterials for 10 days. The co-existence of nanoplastics and ZnO nanoparticles increased H2O2 concentration by 12.76% and 38.30%, compared with the ZnO nanoparticles and nanoplastics exposure. The concentration of abscisic acid (ABA) in plants under the co-existence of nanoplastics and ZnO nanoparticles was 29.53% and 10.42% higher than that in ZnO nanoparticles treated plants and nanoplastics treated plants. The global analysis of phosphoproteomics identified 132 phosphorylated proteins and 173 phosphorylation sites in barley leaves exposed to the nanomaterial combination, which were related to photosynthesis, carbon fixation, nitrogen metabolism, and arginine and proline metabolisms. Further physiological analysis indicated that the combination of ZnO nanoparticles and nanoplastics caused larger damage to the systems of antioxidant and carbohydrate metabolisms as exemplified by decreased activities of apoplastic peroxidases (25.10%-48.60%), glutathione reductase (91.07%-94.94%), and sucrose synthase (53.59%-61.19%) in roots and increased cell wall invertase activity (12.97%-17.61%) in leaves, compared with the single nanomaterial treatments. These results indicate that the modulations in protein phosphorylation were closely related to the physiological responses to nanomaterial exposure, suggesting that the co-existence of nanomaterials may lead to greater impacts than single ones.
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Affiliation(s)
- Junhong Guo
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shuxin Li
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Marian Brestic
- Department of Plant Physiology, Slovak Agricultural University, Tr. A. Hlinku 2, 94976 Nitra, Slovak Republic; Department of Botany and Plant Physiology, Czech University of Life Sciences Prague, Kamycka 129, 16500 Prague, Czech Republic
| | - Na Li
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Peng Zhang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Lei Liu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Xiangnan Li
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China; University of Chinese Academy of Sciences, Beijing 100049, China; Engineering Laboratory for Eco-agriculture in Water Source of Liaoheyuan, Chinese Academy of Sciences, Changchun 130102, China.
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Jośko I, Kusiak M, Różyło K, Baranowska-Wójcik E, Sierocka M, Sheteiwy M, Szwajgier D, Świeca M. The life cycle study revealed distinct impact of foliar-applied nano-Cu on antioxidant traits of barley grain comparing with conventional agents. Food Res Int 2023; 164:112303. [PMID: 36737907 DOI: 10.1016/j.foodres.2022.112303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 12/01/2022] [Accepted: 12/03/2022] [Indexed: 12/23/2022]
Abstract
Despite that the applicability of Cu-based engineered nanoparticles (ENPs) as an antibacterial and antifungal agent for plant protection has been studied widely, little is known about their role in the improvement of crop yield and quality. Here, a full life study was performed to investigate the nutritional quality and bioactivity of barley grains under foliar application of nano-/microparticulate (nano-Cu, nano-CuO, micro-Cu) and ionic Cu compounds (CuSO4, CuEDTA). Hordeum vulgaris L. plants were sprayed with Cu compounds at 500 mg/L during the end of tillering and the beginning of heading. Yield, mineral composition, protein and dietary content, antioxidant (phenolic, anthocyanin, flavonoid, tannin, flavanol) content and antioxidant capacity of barley grain were evaluated. Grain yield was unaffected by all treatments. Only nano-Cu and ionic compounds enhanced Cu accumulation in grain: 2-fold increase was observed compared to the control (2.6 µg/kg). Nano-Cu also increased the dietary fiber content by 19.9 %, while no impact of the other treatments was determined. The content of phenolic compounds, the main group of antioxidants, remained unchanged after Cu supply. In general, for all Cu treatment, antiradical and reducing abilities were decreased or were at the similar level in relation to the control. On the other hand, chelating power in grain extracts was 2-4 times higher under nano-Cu/nano-CuO/micro-Cu than in the untreated sample, while the ionic compounds had no impact on the chelating indicator. Our results demonstrated that more favorable effects were triggered by nano-Cu than CuSO4 or CuEDTA on the tested indicators of barley grain, despite that both compounds resulted in similar superior Cu acquisition. It suggests that nano-Cu may be considered as an alternative agent to be used as economic and traditional fertilizers.
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Ferioun M, Srhiouar N, Bouhraoua S, El Ghachtouli N, Louahlia S. Physiological and biochemical changes in Moroccan barley ( Hordeum vulgare L.) cultivars submitted to drought stress. Heliyon 2023; 9:e13643. [PMID: 36873157 DOI: 10.1016/j.heliyon.2023.e13643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Revised: 01/25/2023] [Accepted: 02/06/2023] [Indexed: 02/11/2023] Open
Abstract
Barley (Hordeum vulgare L.) is the second most consumed and cultivated cereal by the Moroccan population. However, it is predicted that frequent drought periods, caused by climate change, can cause problems in plant growth. Thus, the selection of drought-tolerant barley cultivars is essential to ensure the security of barley's needs. We aimed to screen drought stress tolerance in Moroccan barley cultivars. We tested the drought tolerance of nine Moroccan barley cultivars ('Adrar', 'Amalou', 'Amira', 'Firdaws', 'Laanaceur', 'Massine', 'Oussama', 'Taffa', and 'Tamellalt') based on physiological and biochemical parameters. Drought stress was applied by maintaining field capacity at 40% (90% for the control), and plants were randomly arranged in a greenhouse at 25 °C under natural light conditions. Drought stress decreased relative water content (RWC), shoot dry weight (SDW), and chlorophyll content (SPAD index), but significantly increased electrolyte leakage, hydrogen peroxide, malondialdehyde (MDA), water-soluble carbohydrates, and soluble protein contents, as well as catalase (CAT) and ascorbate peroxidase (APX) activities. High levels of SDW, RWC, CAT, and APX activities were recorded in 'Firdaws', 'Laanaceur', 'Massine', 'Taffa', and 'Oussama', which can be interpreted by high drought tolerance. On the other hand, 'Adrar', 'Amalou', 'Amira', and 'Tamellalt' showed higher values of MDA and H2O2 content, which can be linked with drought sensitivity. Physiological and biochemical parameter changes are discussed in terms of barley's tolerance to drought. Tolerant cultivars could be a good background for barley breeding in areas known for the alternative of long dry spells.
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Cembrowska-Lech D, Rybak K. Nanopriming of Barley Seeds-A Shotgun Approach to Improve Germination under Salt Stress Conditions by Regulating of Reactive Oxygen Species. Plants (Basel) 2023; 12:405. [PMID: 36679118 PMCID: PMC9864488 DOI: 10.3390/plants12020405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 01/05/2023] [Accepted: 01/13/2023] [Indexed: 06/17/2023]
Abstract
Abiotic stresses are the most important environmental factors affecting seed germination, and negatively affect crop production worldwide. Water availability is essential for proper seed imbibition and germination. The mechanism by which seeds can germinate in areas with high soil salinity is, however, still unclear. The present study aims to investigate the protective roles of AgNPs in alleviating stress symptoms caused by salinity exposure in barley seeds. For this purpose, different treatment combinations of seed priming with PVP-AgNPs in salinity stress conditions were used. Salt stress (150 and 200 mM) was found to reduce seed germination by 100% when compared to the control. Under NaCl concentrations, seed priming with PVP-AgNPs (40 mg L-1) only for 2 h, reduced salinity effects. Salinity resulted in increased reactive oxygen species (ROS) generation compared to the control. However, increased antioxidants in the NPs treatments, such as SOD, CAT, GR, GPX (expression at both genes, such as HvSOD, HvCAT, HvGR or HvGPX, and protein levels) and glutathione content, scavenged these ROS. Considering all of the parameters under study, priming alleviated salt stress. To summarize, seed priming with AgNPs has the potential to alleviate salinity stress via reduced ROS generation and activation of the antioxidant enzymatic system during germination.
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Affiliation(s)
- Danuta Cembrowska-Lech
- Institute of Biology, University of Szczecin, Wąska 13, 71-415 Szczecin, Poland
- Molecular Biology and Biotechnology Center, University of Szczecin, Wąska 13, 71-415 Szczecin, Poland
| | - Kinga Rybak
- Institute of Biology, University of Szczecin, Wąska 13, 71-415 Szczecin, Poland
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Meng G, Rasmussen SK, Christensen CSL, Fan W, Torp AM. Molecular breeding of barley for quality traits and resilience to climate change. Front Genet 2023; 13:1039996. [PMID: 36685930 PMCID: PMC9851277 DOI: 10.3389/fgene.2022.1039996] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 12/19/2022] [Indexed: 01/06/2023] Open
Abstract
Barley grains are a rich source of compounds, such as resistant starch, beta-glucans and anthocyanins, that can be explored in order to develop various products to support human health, while lignocellulose in straw can be optimised for feed in husbandry, bioconversion into bioethanol or as a starting material for new compounds. Existing natural variations of these compounds can be used to breed improved cultivars or integrated with a large number of mutant lines. The technical demands can be in opposition depending on barley's end use as feed or food or as a source of biofuel. For example beta-glucans are beneficial in human diets but can lead to issues in brewing and poultry feed. Barley breeders have taken action to integrate new technologies, such as induced mutations, transgenics, marker-assisted selection, genomic selection, site-directed mutagenesis and lastly machine learning, in order to improve quality traits. Although only a limited number of cultivars with new quality traits have so far reached the market, research has provided valuable knowledge and inspiration for future design and a combination of methodologies to achieve the desired traits. The changes in climate is expected to affect the quality of the harvested grain and it is already a challenge to mitigate the unpredictable seasonal and annual variations in temperature and precipitation under elevated [CO2] by breeding. This paper presents the mutants and encoded proteins, with a particular focus on anthocyanins and lignocellulose, that have been identified and characterised in detail and can provide inspiration for continued breeding to achieve desired grain and straw qualities.
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Affiliation(s)
- Geng Meng
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark,College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Søren K. Rasmussen
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark,*Correspondence: Søren K. Rasmussen,
| | | | - Weiyao Fan
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark
| | - Anna Maria Torp
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark
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48
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Thieme M, Hochmuth A, Ilse TE, Cuesta-Seijo JA, Stoma S, Meier R, Nørrelykke SF, Pedas PR, Braumann I, Zeeman SC. Detecting variation in starch granule size and morphology by high-throughput microscopy and flow cytometry. Carbohydr Polym 2023; 299:120169. [PMID: 36876784 DOI: 10.1016/j.carbpol.2022.120169] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 08/29/2022] [Accepted: 09/25/2022] [Indexed: 10/14/2022]
Abstract
Starch forms semi-crystalline, water-insoluble granules, the size and morphology of which vary according to biological origin. These traits, together with polymer composition and structure, determine the physicochemical properties of starch. However, screening methods to identify differences in starch granule size and shape are lacking. Here, we present two approaches for high-throughput starch granule extraction and size determination using flow cytometry and automated, high-throughput light microscopy. We evaluated the practicality of both methods using starch from different species and tissues and demonstrated their effectiveness by screening for induced variation in starch extracted from over 10,000 barley lines, yielding four with heritable changes in the ratio of large A-granules to small B-granules. Analysis of Arabidopsis lines altered in starch biosynthesis further demonstrates the applicability of these approaches. Identifying variation in starch granule size and shape will enable identification of trait-controlling genes for developing crops with desired properties, and could help optimise starch processing.
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Affiliation(s)
- Mercedes Thieme
- Institute of Molecular Plant Biology, ETH Zurich, 8092 Zurich, Switzerland; Carlsberg Research Laboratory, J.C. Jacobsens Gade 4, 1799 Copenhagen V, Denmark.
| | - Anton Hochmuth
- Institute of Molecular Plant Biology, ETH Zurich, 8092 Zurich, Switzerland; Carlsberg Research Laboratory, J.C. Jacobsens Gade 4, 1799 Copenhagen V, Denmark.
| | | | - Jose A Cuesta-Seijo
- Carlsberg Research Laboratory, J.C. Jacobsens Gade 4, 1799 Copenhagen V, Denmark
| | | | - Roger Meier
- ScopeM, ETH Zurich, 8093 Zurich, Switzerland.
| | | | - Pai Rosager Pedas
- Carlsberg Research Laboratory, J.C. Jacobsens Gade 4, 1799 Copenhagen V, Denmark.
| | - Ilka Braumann
- Carlsberg Research Laboratory, J.C. Jacobsens Gade 4, 1799 Copenhagen V, Denmark.
| | - Samuel C Zeeman
- Institute of Molecular Plant Biology, ETH Zurich, 8092 Zurich, Switzerland.
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49
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Jiang Q, Yang Q, Harwood W, Tang H, Wei Y, Zheng Y. A CRISPR/Cas9 Protocol for Target Gene Editing in Barley. Methods Mol Biol 2023; 2653:287-296. [PMID: 36995633 DOI: 10.1007/978-1-0716-3131-7_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
Abstract
Previous studies of gene function rely on the existing natural genetic variation or on induction of mutations by physical or chemical mutagenesis. The availability of alleles in nature, and random mutagenesis induced by physical or chemical means, limits the depth of research. The CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9) system provides the means to rapidly modify genomes in a precise and predictable way, making it possible to modulate gene expression and modify the epigenome. Barley is the most appropriate model species for functional genomic analysis of common wheat. Therefore, the genome editing system of barley is very important for the study of wheat gene function. Here we detail a protocol for barley gene editing. The effectiveness of this method has been confirmed in our previous published studies.
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Affiliation(s)
- Qiantao Jiang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China.
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China.
| | - Qiang Yang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | | | - Huaping Tang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yuming Wei
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Youliang Zheng
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, China
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50
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Montenegro Alonso AP, Bakkeren G. Transfection of Barley Leaf Protoplasts with a Fluorescently Tagged Fungal Effector for In Planta Localization Studies in Barley. Methods Mol Biol 2023; 2659:83-93. [PMID: 37249887 DOI: 10.1007/978-1-0716-3159-1_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The isolation and transfection of protoplasts from plant leaves have been routinely used for transient expression and functional studies in model plants. However, current approaches to characterize pathogen effector molecules in a cereal host are inefficient and technically challenging. In this chapter, we describe a protocol to isolate and transfect barley mesophyll protoplasts with a fluorescently tagged fungal effector of the barley smut pathogen Ustilago hordei. Tagging of a fungal effector with a fluorescent protein and tracking its localization in cells of its natural host provides insight into its putative in planta localization and helps to narrow down the location of putative host interactors.
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Affiliation(s)
- Ana Priscilla Montenegro Alonso
- Department of Botany, University of British Columbia, Vancouver, BC, Canada
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Guus Bakkeren
- Summerland Research and Development Centre, Agriculture and Agri-Food Canada, Summerland, BC, Canada.
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