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Bleša D, Matušinský P, Baláž M, Nesvadba Z, Zavřelová M. Endophyte Inoculation and Elevated Potassium Supply on Productivity, Growth and Physiological Parameters of Spring Barley ( Hordeum vulgare L.) Genotypes over Contrasting Seasons. Plants (Basel) 2024; 13:1168. [PMID: 38674576 PMCID: PMC11054443 DOI: 10.3390/plants13081168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 04/15/2024] [Accepted: 04/19/2024] [Indexed: 04/28/2024]
Abstract
In recent years, recurrent droughts have significantly affected spring barley production, reducing the quantity and quality of grain. This study aims to identify genotype-specific traits and the drought resilience of six different Hordeum vulgare L. (spring barley) genotypes, while also examining the potential of potassium application and fungal endophyte Serendipita indica inoculation to mitigate the negative effects of dry periods during the growing season. Field experiments were conducted over a three-year period from 2020 to 2022, measuring physiological, growth, and yield parameters. To get insight into the physiological state of the plants, we measured the soluble sugars content and the ratio of stable carbon isotopes in the flag leaf tissue, which reflects conditions during its formation. The dominant factors that influenced the measured parameters were the genotypes and seasons, as well as their interaction, rather than other experimental factors. The results showed that the Spitfire and Accordine varieties were the best performing in both the 2020 and 2021 seasons, as indicated by their yield. However, in the drier 2022 season, the yield of these two varieties decreased significantly (to 55% for Spitfire and to 69% for Accordine of their yield in 2021), while for the arid-region genotypes, it remained at the same level as the previous year. This study sheds light on the potential of various genotypes to withstand periods of drought and the effectiveness of using potassium application and S. indica inoculation as mitigation approaches.
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Affiliation(s)
- Dominik Bleša
- Agrotest Fyto, Ltd., 76701 Kroměříž, Czech Republic
- Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic;
| | - Pavel Matušinský
- Agrotest Fyto, Ltd., 76701 Kroměříž, Czech Republic
- Department of Botany, Faculty of Science, Palacký University in Olomouc, 78371 Olomouc, Czech Republic
| | - Milan Baláž
- Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic;
| | - Zdeněk Nesvadba
- Gene Bank, Crop Research Institute, Drnovská 507, 16106 Praha 6 – Ruzyně, Czech Republic;
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Hlisnikovský L, Menšík L, Roman M, Kunzová E. The Evaluation of a Long-Term Experiment on the Relationships between Weather, Nitrogen Fertilization, Preceding Crop, and Winter Wheat Grain Yield on Cambisol. Plants (Basel) 2024; 13:802. [PMID: 38592816 PMCID: PMC10974760 DOI: 10.3390/plants13060802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 03/07/2024] [Accepted: 03/08/2024] [Indexed: 04/11/2024]
Abstract
In this paper, a sequence (1979-2022) of a long-term trial established in Lukavec in 1956 (Czech Republic) focusing on the effect of weather, various nitrogen (N) fertilization methods (control, PK, N1PK, N2PK, and N3PK) and preceding crops (cereals, legumes, and oil plants) on winter wheat grain yield is presented. The weather significantly changed at the site of the long-term trial. While the trend in the mean temperature significantly increased, precipitation did not change significantly over the long term. Four relationships between weather and grain yield were evaluated to be significant: (a) the mean temperature in February (r = -0.4) and the precipitation in (b) February (r = -0.4), (c) March (r = -0.4), and (d) May (r = 0.5). The yield trends for all the fertilizer treatments increased, including the unfertilized control. The N3PK treatment provided the highest mean grain yields, while the unfertilized control had the lowest yields. Comparing the preceding crops, the highest yields were harvested when the wheat followed the legumes. On the other hand, the cereals were evaluated as the least suitable preceding crop in terms of grain yield. According to the linear-plateau model, the optimal nitrogen (N) dose for modern wheat varieties, following legumes and under the trial's soil climate conditions, was 131 kg ha-1 N, corresponding to a mean grain yield of 8.2 t ha-1.
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Affiliation(s)
- Lukáš Hlisnikovský
- Department of Nutrition Management, Crop Research Institute, Drnovská 507, Ruzyně, 161 01 Prague, Czech Republic; (L.M.); (E.K.)
| | - Ladislav Menšík
- Department of Nutrition Management, Crop Research Institute, Drnovská 507, Ruzyně, 161 01 Prague, Czech Republic; (L.M.); (E.K.)
| | - Muhammad Roman
- Department of Environment, Faculty of Environment, Jan Evangelista Purkyně University in Ústí nad Labem, Pasteurova 15, 400 96 Ústí nad Labem, Czech Republic;
| | - Eva Kunzová
- Department of Nutrition Management, Crop Research Institute, Drnovská 507, Ruzyně, 161 01 Prague, Czech Republic; (L.M.); (E.K.)
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Veselá Z, Brzáková M, Novotná A, Vostrý L. Genetic Parameters for Limousine Interbeef Genetic Evaluation of Calving Traits. Genes (Basel) 2024; 15:216. [PMID: 38397206 PMCID: PMC10887883 DOI: 10.3390/genes15020216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 02/01/2024] [Accepted: 02/06/2024] [Indexed: 02/25/2024] Open
Abstract
The aim of this study was to estimate across-country genetic correlations for calving traits (birth weight, calving ease) in the Limousine breed. Correlations were estimated for eight populations (Czech Republic, joint population of Denmark, Finland, and Sweden, France, Great Britain, Ireland, Slovenia, Switzerland, and Estonia). An animal model on raw performance accounting for across-country interactions (AMACI) was used. (Co)variance components were estimated for pairwise combinations of countries. Fixed and random effects were defined by each country according to its national genetic evaluation system. The average across-country genetic correlation for the direct genetic effect was 0.85 for birth weight (0.69-0.96) and 0.75 for calving ease (0.62-0.94). The average correlation for the maternal genetic effect was 0.57 for birth weight and 0.61 for calving ease. After the estimation of genetic parameters, the weighted bending procedure was used to compute the full Interbeef genetic correlation matrix. After bending, direct genetic correlations ranged from 0.62 to 0.84 (with an average of 0.73) for birth weight and from 0.58 to 0.82 (with an average of 0.68) for calving ease.
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Affiliation(s)
- Zdeňka Veselá
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (M.B.); (A.N.); (L.V.)
| | - Michaela Brzáková
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (M.B.); (A.N.); (L.V.)
| | - Alexandra Novotná
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (M.B.); (A.N.); (L.V.)
| | - Luboš Vostrý
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (M.B.); (A.N.); (L.V.)
- Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, 165 00 Prague, Czech Republic
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Singh VV, Naseer A, Sellamuthu G, Jakuš R. An Optimized and Cost-Effective RNA Extraction Method for Secondary Metabolite-Enriched Tissues of Norway Spruce ( Picea abies). Plants (Basel) 2024; 13:389. [PMID: 38337922 PMCID: PMC10857598 DOI: 10.3390/plants13030389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 01/21/2024] [Accepted: 01/26/2024] [Indexed: 02/12/2024]
Abstract
Since the development of next-generation sequencing techniques and with the growing interest in transcriptomic studies, there is a demand for high-throughput RNA extraction techniques. General RNA extraction protocols are unreliable when it comes to the quality and quantity of isolated RNA obtained from different tissue types of different plant species. Despite Norway spruce (Picea abies) being one of the most significant and commercially valuable tree species in European forests, only limited genetic research is available. In this study, we developed a cetyltrimethylammonium bromide (CTAB) protocol by modifying the original method. We compared this CTAB protocol with other widely used methods for extracting RNA from different tissues (needle, phloem, and root) of Norway spruce, known for its richness in polyphenols, polysaccharides, and secondary metabolites. The modified CTAB method proves to be superior to the kit-based and TRIzol-based methods for extracting RNA from the metabolite-rich tissues of Norway spruce, resulting in high RNA quality and integrity values (RIN~7-9). The modified CTAB RNA extraction method is rapid, cost-effective, and relatively simple in yielding the desired RNA quality from Norway spruce tissues. It is optimal for RNA sequencing and other downstream molecular applications.
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Affiliation(s)
- Vivek Vikram Singh
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha-Suchdol, 165 00 Prague, Czech Republic; (A.N.); (G.S.); (R.J.)
| | - Aisha Naseer
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha-Suchdol, 165 00 Prague, Czech Republic; (A.N.); (G.S.); (R.J.)
| | - Gothandapani Sellamuthu
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha-Suchdol, 165 00 Prague, Czech Republic; (A.N.); (G.S.); (R.J.)
| | - Rastislav Jakuš
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha-Suchdol, 165 00 Prague, Czech Republic; (A.N.); (G.S.); (R.J.)
- Institute of Forest Ecology, Slovak Academy of Sciences, Štúrova 2, 960 53 Zvolen, Slovakia
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Kubickova S, Kopecna O, Cernohorska H, Rubes J, Vozdova M. X Chromosome-Specific Repeats in Non-Domestic Bovidae. Genes (Basel) 2024; 15:159. [PMID: 38397149 PMCID: PMC10887555 DOI: 10.3390/genes15020159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 01/23/2024] [Accepted: 01/24/2024] [Indexed: 02/25/2024] Open
Abstract
Repetitive sequences form a substantial and still enigmatic part of the mammalian genome. We isolated repetitive DNA blocks of the X chromosomes of three species of the family Bovidae: Kobus defassa (KDEXr sequence), Bos taurus (BTAXr sequence) and Antilope cervicapra (ACEXr sequence). The copy numbers of the isolated sequences were assessed using qPCR, and their chromosomal localisations were analysed using FISH in ten bovid tribes and in outgroup species. Besides their localisation on the X chromosome, their presence was also revealed on the Y chromosome and autosomes in several species. The KDEXr sequence abundant in most Bovidae species also occurs in distant taxa (Perissodactyla and Carnivora) and seems to be evolutionarily older than BTAXr and ACEXr. The ACEXr sequence, visible only in several Antilopini species using FISH, is probably the youngest, and arised in an ancestor common to Bovidae and Cervidae. All three repetitive sequences analysed in this study are interspersed among gene-rich regions on the X chromosomes, apparently preventing the crossing-over in their close vicinity. This study demonstrates that repetitive sequences on the X chromosomes have undergone a fast evolution, and their variation among related species can be beneficial for evolutionary studies.
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Affiliation(s)
| | | | | | | | - Miluse Vozdova
- Department of Genetics and Reproductive Biotechnologies, Central European Institute of Technology-Veterinary Research Institute, Hudcova 70, 621 00 Brno, Czech Republic; (S.K.); (H.C.); (J.R.)
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Raimanova I, Svoboda P, Moulik M, Wollnerova J, Haberle J. The Effect of Water Availability on the Carbon Content of Grain and Above- and Belowground Residues in Common and Einkorn Wheat. Plants (Basel) 2024; 13:181. [PMID: 38256735 PMCID: PMC10820846 DOI: 10.3390/plants13020181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 01/07/2024] [Accepted: 01/08/2024] [Indexed: 01/24/2024]
Abstract
The carbon (C) fixed by crops, which is exported with harvest and retained as postharvest residues in a field, is important for calculating the C balance. The aim of this study was to determine the effect of water availability on the C content in whole wheat plants. In a three-year field trial, the weights of grain, straw, chaff, stubble, and roots of two cultivars of winter wheat (Triticum aestivum L.) and one cultivar of einkorn wheat (Triticum monococcum L.) and their carbon contents were determined in water stress, irrigation, and rain-fed control treatments. The water availability, year, and cultivar had a significant influence on the C content in aboveground plant parts, but the effect of water on grain C was weak. The C content decreased with irrigation and increased with drought, but the differences were small (at most, 3.39% in chaff). On average, the C contents of grain, straw, chaff, and roots reached 45.0, 45.7, 42.6, and 34.9%, respectively. The amount of C exported with grain and left on the field in the form of postharvest residues depended on the weight of the total biomass and the ratio of grain to straw and residue. Whole plant C yield reached 8.99, 7.46, and 9.65 t ha-1 in rain-fed control, stressed, and irrigated treatments, respectively, and 8.91, 9.45, and 7.47 t ha-1 in Artix, Butterfly, and Rumona, respectively. Irrigation significantly increased the C content in grain and straw (but not in chaff, stubble, and roots) in comparison with water shortage conditions. On average, a grain yield of 1 t ha-1 corresponded to an average export of 0.447-0.454 t C ha-1 in the grain of all cultivars and inputs of 0.721, 0.832, and 2.207 t C ha-1 of residue to the soil in the form of straw and postharvest residue in the two cultivars of common wheat and one of einkorn. The results of the study provided reliable data for the calculation of the C balance of wheat under conditions of different water availability.
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Affiliation(s)
- Ivana Raimanova
- Department of Sustainable Arable Land Management and Cropping Systems, Crop Research Institute, 16106 Prague, Czech Republic; (P.S.); (M.M.); (J.W.); (J.H.)
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Dreiseitl A. Mlo-Mediated Broad-Spectrum and Durable Resistance against Powdery Mildews and Its Current and Future Applications. Plants (Basel) 2024; 13:138. [PMID: 38202446 PMCID: PMC10780490 DOI: 10.3390/plants13010138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 01/02/2024] [Accepted: 01/02/2024] [Indexed: 01/12/2024]
Abstract
Mlo is a well-known broad-spectrum recessively inherited monogenic durable resistance to powdery mildew caused by Blumeria hordei found first in barley, originally in an induced mutant in 1942 and later in other mutants and also in Ethiopian landraces. The first commercial varieties possessing Mlo resistance were released during 1979-1986, but these often showed symptoms of necrotic leaf spotting associated with reduced grain yield. However, this yield penalty was successfully reduced by breeding Mlo-resistant varieties of spring barley predominate in Europe; for example, in the Czech Republic, their ratio surpassed 90% of the total number of newly released varieties. However, outside Europe, Mlo-varieties are not yet popular and can be exploited more widely. Winter barley varieties are generally non-resistant, but the use of Mlo for their breeding is controversial despite the limited adaptability of the pathogen to this resistance. The renewal of mechanically disturbed epidermal plant cell walls, including the penetration of mildews, is common in plants, and the Mlo-type resistance is exploited in many other crop species, including wheat.
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Affiliation(s)
- Antonín Dreiseitl
- Department of Integrated Plant Protection, Agrotest Fyto, Ltd., 767 01 Kroměříž, Czech Republic
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Synytsya A, Bleha R, Skrynnikova A, Babayeva T, Čopíková J, Kvasnička F, Jablonsky I, Klouček P. Mid-Infrared Spectroscopic Study of Cultivating Medicinal Fungi Ganoderma: Composition, Development, and Strain Variability of Basidiocarps. J Fungi (Basel) 2023; 10:23. [PMID: 38248933 PMCID: PMC10817577 DOI: 10.3390/jof10010023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/22/2023] [Accepted: 12/26/2023] [Indexed: 01/23/2024] Open
Abstract
Attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy was proposed for rapid, versatile, and non-invasive screening of Ganoderma basidiocarps to assess their potential for specific applications. Fifteen species and strains of this fungus were selected for analysis, and fine sections at different parts of young and mature basidiocarps were obtained. The spectra of fungal samples showed significant differences interpreted in terms of biochemical composition using characteristic bands of proteins, polysaccharides, lipids, and triterpenoids. Obviously, for the transverse sections in trama, especially in the basal part, the most intense bands at 950-1200 cm-1 corresponded to polysaccharide vibrations, while for the superficial sections, the bands of carbonyl and aliphatic groups of triterpenoids at 1310-1470, 1550-1740, and 2850-2980 cm-1 predominated. The pilei, especially hymenium tubes, apparently contained more proteins than the bases and stipes, as evidenced by the intense bands of amide vibrations at 1648 and 1545-1550 cm-1. The specificity of the Ganoderma basidiocarp is a densely pigmented surface layer rich in triterpenoids, as proved by ATR-FTIR spectroscopy. The spectral differences corresponding to the specificity of the triterpenoid composition may indicate the prospects of individual strains and species of this genus for cultivation and further use in food, cosmetics, or medicine.
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Affiliation(s)
- Andriy Synytsya
- Department of Carbohydrates and Cereals, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic; (A.S.); (T.B.); (J.Č.)
| | - Roman Bleha
- Department of Carbohydrates and Cereals, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic; (A.S.); (T.B.); (J.Č.)
| | - Anastasia Skrynnikova
- Department of Carbohydrates and Cereals, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic; (A.S.); (T.B.); (J.Č.)
| | - Tamilla Babayeva
- Department of Carbohydrates and Cereals, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic; (A.S.); (T.B.); (J.Č.)
| | - Jana Čopíková
- Department of Carbohydrates and Cereals, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic; (A.S.); (T.B.); (J.Č.)
| | - František Kvasnička
- Department of Meat and Preservation, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic;
| | - Ivan Jablonsky
- Department of Gardening, Czech University of Life Sciences Prague, Kamýcká 129, 16500 Prague, Czech Republic;
| | - Pavel Klouček
- Department of Food Science, Czech University of Life Sciences Prague, Kamýcká 129, 16500 Prague, Czech Republic;
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Stastny K, Hodkovicova N, Jerabek M, Petren M, Viskova M, Papouskova A, Bartejsova I, Putecova-Tosnerova K, Charvatova M, Zouharova M, Matiaskova K, Nedbalcova K. Dosage Optimisation of Trimethoprim and Sulfamethoxazole for the Treatment of an Avian Pathogenic Strain of Escherichia coli in Broiler Chickens. Antibiotics (Basel) 2023; 13:11. [PMID: 38275321 PMCID: PMC10812532 DOI: 10.3390/antibiotics13010011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 12/08/2023] [Accepted: 12/19/2023] [Indexed: 01/27/2024] Open
Abstract
Based on pharmacokinetic studies carried out according to the methodologies defined by the European Medicines Agency (EMA) using mass spectrometry analysis, a new formulation of a veterinary drug for the treatment of broiler chickens is proposed. Currently, the traditional trimethoprim-sulfamethoxazole drug used for broilers is applied in a 1:5 ratio, and the recommended dose is 45 mg kg-1 of live weight administered at 24 h intervals for 3 to 5 days. In this study, we propose a novel combination containing similar active substances in a newly established ratio of 1:4, with a recommended dosage of 20 mg kg-1 of live weight administered at 24 h intervals for 3 to 5 days. With this method, the currently recommended dose of the traditional trimethoprim-sulfamethoxazole drug used for broilers can be reduced by more than half. The efficacy of the newly designed formulation and dosage of the drug was verified in a bioassay for the treatment of broilers experimentally infected with an avian pathogenic strain of Escherichia coli. In the experiment, we compared the newly designed dosage with the traditional dosage in terms of efficacy and dosage. There were no statistically significant differences between the two drugs in efficacy regarding the survival of chickens after experimental infection or changes in their health status. The experimental results suggest that a significant reduction in the recommended daily dose of drugs containing trimethoprim and sulfamethoxazole for the treatment of bacterial infections in broilers is possible and can support the prudent use of antimicrobials, including the limitation of their overuse.
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Affiliation(s)
- Kamil Stastny
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Nikola Hodkovicova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Martin Jerabek
- Tekro, Ltd., Visnova 484/2, 140 00 Prague, Czech Republic; (M.J.); (M.P.); (M.V.)
| | - Michal Petren
- Tekro, Ltd., Visnova 484/2, 140 00 Prague, Czech Republic; (M.J.); (M.P.); (M.V.)
| | - Michaela Viskova
- Tekro, Ltd., Visnova 484/2, 140 00 Prague, Czech Republic; (M.J.); (M.P.); (M.V.)
| | - Aneta Papouskova
- Institute of Infection Diseases and Microbiology, Faculty of Veterinary Medicine, University of Veterinary Sciences, Palackeho 1-3, 612 42 Brno, Czech Republic;
| | - Iva Bartejsova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Kristina Putecova-Tosnerova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Michaela Charvatova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Monika Zouharova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Katarina Matiaskova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
| | - Katerina Nedbalcova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (K.S.); (N.H.); (I.B.); (K.P.-T.); (M.C.); (M.Z.); (K.M.)
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Brzáková M, Veselá Z, Vařeka J, Bauer J. Improving Breeding Value Reliability with Genomic Data in Breeding Groups of Charolais. Genes (Basel) 2023; 14:2139. [PMID: 38136964 PMCID: PMC10743247 DOI: 10.3390/genes14122139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 11/24/2023] [Accepted: 11/24/2023] [Indexed: 12/24/2023] Open
Abstract
The aim of this study was to assess the impact of incorporating genomic data using the single-step genomic best linear unbiased prediction (ssGBLUP) method compared to the best linear unbiased prediction (BLUP) method on the reliability of breeding values for age at first calving, calving interval, and productive longevity at 78 months in Charolais cattle. The study included 48,590 purebred Charolais individuals classified into four subgroups based on genotyping and performance records. The results showed that considering genotypes significantly improved genomic estimated breeding values (GEBV) reliability across all categories except nongenotyped individuals. For young genotyped individuals, the increase in reliability was up to 27% for both sexes. The highest average reliability was achieved for genotyped proven bulls and cows with performance records, and the inclusion of genomic data further improved the reliability by up to 22% and 21% for cows and bulls, respectively. The gain in reliability was observed mainly during the first three calvings, and then the differences decreased. The imported individuals showed lower estimated breeding values (EBV) and GEBV reliabilities than the domestic population, probably due to the weak genetic connection with the domestic population. However, when the progeny of imported heifers were sired by domestic bulls, the reliability increased by up to 24%. For nongenotyped individuals, only a slight increase in reliability was observed; however, the number of genotyped individuals in the population was still relatively small.
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Affiliation(s)
- Michaela Brzáková
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (Z.V.); (J.V.)
| | - Zdeňka Veselá
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (Z.V.); (J.V.)
| | - Jan Vařeka
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic; (Z.V.); (J.V.)
| | - Jiří Bauer
- Czech-Moravian Breeders’ Corporation, 252 09 Hradištko, Czech Republic;
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Zouharová M, Matiašovic J, Gebauer J, Matiašková K, Nedbalcová K. Survey of Genotype Diversity, Virulence, and Antimicrobial Resistance Genes in Mastitis-Causing Streptococcus uberis in Dairy Herds Using Whole-Genome Sequencing. Pathogens 2023; 12:1378. [PMID: 38133263 PMCID: PMC10745719 DOI: 10.3390/pathogens12121378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 11/18/2023] [Accepted: 11/21/2023] [Indexed: 12/23/2023] Open
Abstract
Streptococcus uberis is one of the primary causative agents of mastitis, a clinically and economically significant disease that affects dairy cattle worldwide. In this study, we analyzed 140 S. uberis strains isolated from mastitis milk samples collected from 74 cow herds in the Czech Republic. We employed whole-genome sequencing to screen for the presence of antimicrobial resistance (AMR) genes and genes encoding virulence factors, and to assess their genetic relationships. Our analysis revealed the presence of 88 different sequence types (STs), with 41% of the isolates assigned to global clonal complexes (GCCs), the majority of which were affiliated with GCC5. The STs identified were distributed across the major phylogenetic branches of all currently known STs. We identified fifty-one putative virulence factor genes, and the majority of isolates carried between 27 and 29 of these genes. A tendency of virulence factors and AMR genes to cluster with specific STs was observed, although such clustering was not evident within GCCs. Principal component analysis did not reveal significant diversity among isolates when grouped by GCC or ST prevalence. The substantial genomic diversity and the wide array of virulence factors found in S. uberis strains present a challenge for the implementation of effective anti-mastitis measures.
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Affiliation(s)
- Monika Zouharová
- Department of Infectious Diseases and Preventive Medicine, Veterinary Research Institute, 62100 Brno, Czech Republic; (J.M.); (J.G.); (K.M.); (K.N.)
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12
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Mohammed S, Hussen A. Influence of deficit irrigation levels on agronomic performance of pepper (Capsicum annuum L.) under drip at alage, central rift valley of Ethiopia. PLoS One 2023; 18:e0280639. [PMID: 37992118 PMCID: PMC10664897 DOI: 10.1371/journal.pone.0280639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 01/04/2023] [Indexed: 11/24/2023] Open
Abstract
Water scarcity is one of the most significant constraints on agricultural production in the world, notably in Ethiopia. In the location where this study was conducted, production is only possible once a year. To make the most use of available water, effective water application technologies must be used, and the feasibility of producing crops in water-stressed scenarios must also be researched. In areas of water shortage, deficit irrigation was an essential approach for raising water production and improving water use efficiency. For this purpose, a field experiment was carried out at Alage ATVET College in Ethiopia's Central Rift Valley during the 2019/20 dry season. The regularly grown cash crop pepper was chosen for experimentation under drip irrigation. The study aimed were to investigate the influence of deficit irrigation levels on agronomic performance and water productivity. Seven deficit levels (DI) namely 60, 50, 40, 30, 20, 10 and 0% were laid out in a randomized complete block design with three replications by using drip irrigation. Water application was used in all deficit levels by managing the demand side. Full irrigation produced the maximum plant height, branch number, fruit weight per plant, fruit diameter, fruit length, marketable and total yield. However, at 20% DI levels, stem diameter, flower and fruit number per plant increased. There were only significant variations in total dry yield at 50% and 60% deficiency levels. Marketable yield was significantly different across all deficit levels. It was not possible to determine the water stress threshold level of pepper due to the large variation in yield, but at 30% DI, the yield reduction was about one-quarter of the 0% deficiency level by withholding 33.4% water. CWUE was significantly different at all deficit levels, demonstrating that as stress levels rise, so does CWUE. IWUE exhibited significant difference only at 0 and10% DI. As a result, it is possible to conclude that using at 30% deficit by withholding 33.4% of water can be used to optimize the yield and water productivity of pepper production at Alage and other areas with comparable agro-ecology.
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Affiliation(s)
- Seid Mohammed
- Department of Irrigation, Alage ATVET College, Zeway, Ethiopia
| | - Arebu Hussen
- Department of Plant Science, Mekdela Amba University, Tulu Awulia, Ethiopia
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13
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Benedetto A, Šťastný K, Giaccio N, Marturella M, Biasibetti E, Arigoni M, Calogero R, Gili M, Pezzolato M, Tošnerová K, Hodkovicová N, Faldyna M, Puleio R, Bozzo G, Bozzetta E. RNAseq Analysis of Livers from Pigs Treated with Testosterone and Nandrolone Esters: Selection and Field Validation of Transcriptional Biomarkers. Animals (Basel) 2023; 13:3495. [PMID: 38003113 PMCID: PMC10668810 DOI: 10.3390/ani13223495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 11/06/2023] [Accepted: 11/07/2023] [Indexed: 11/26/2023] Open
Abstract
The use of anabolic-androgenic steroids (AASs) as growth promoters in farm animals is banned in the European Union, representing both an illicit practice and a risk for consumer health. However, these compounds are still illegally administered, often in the form of synthetic esters. This work aimed to characterize significant coding RNA perturbations related to the illicit administration of testosterone and nandrolone esters in fattening pigs. A total of 27 clinically healthy 90-day-old pigs were randomly assigned to test and control groups. Nine animals were treated with testosterone esters (Sustanon®) and other nine with nandrolone esters (Myodine®). At the end of the trial, liver samples were collected and analyzed using RNAseq, allowing the identification of 491 differentially expressed genes (DEGs). The transcriptional signature was further characterized by a smaller sub-cluster of 143 DEGs, from which a selection of 16 genes was made. The qPCR analysis confirmed that the identified cluster could still give good discrimination between untreated gilt and barrows compared to the relative testosterone-treated counterparts. A conclusive field survey on 67 liver samples collected from pigs of different breeds and weight categories confirmed, in agreement with testosterone residue profiles, the specificity of selected transcriptional biomarkers, showing their potential applications for screening purposes when AAS treatment is suspected, allowing to focus further investigations of competent authorities and confirmatory analysis where needed.
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Affiliation(s)
- Alessandro Benedetto
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
| | - Kamil Šťastný
- Department of Infectious Diseases and Preventive Medicine, Veterinary Research Institute, 621 00 Brno, Czech Republic; (K.Š.); (K.T.); (N.H.); (M.F.)
| | - Nunzia Giaccio
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
| | - Marianna Marturella
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
| | - Elena Biasibetti
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
| | - Maddalena Arigoni
- Dipartimento di Biotecnologie e Scienze della Salute, Core-Lab di Bioinformatica e Genomica, Università degli Studi di Torino, 10124 Turin, Italy; (M.A.); (R.C.)
| | - Raffaele Calogero
- Dipartimento di Biotecnologie e Scienze della Salute, Core-Lab di Bioinformatica e Genomica, Università degli Studi di Torino, 10124 Turin, Italy; (M.A.); (R.C.)
| | - Marilena Gili
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
| | - Marzia Pezzolato
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
| | - Kristína Tošnerová
- Department of Infectious Diseases and Preventive Medicine, Veterinary Research Institute, 621 00 Brno, Czech Republic; (K.Š.); (K.T.); (N.H.); (M.F.)
| | - Nikola Hodkovicová
- Department of Infectious Diseases and Preventive Medicine, Veterinary Research Institute, 621 00 Brno, Czech Republic; (K.Š.); (K.T.); (N.H.); (M.F.)
| | - Martin Faldyna
- Department of Infectious Diseases and Preventive Medicine, Veterinary Research Institute, 621 00 Brno, Czech Republic; (K.Š.); (K.T.); (N.H.); (M.F.)
| | - Roberto Puleio
- Istituto Zooprofilattico Sperimentale della Sicilia, 90129 Palermo, Italy;
| | - Giancarlo Bozzo
- Dipartimento di Medicina Veterinaria, Università degli Studi di Bari Aldo Moro, 70121 Bari, Italy;
| | - Elena Bozzetta
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, 10154 Turin, Italy; (N.G.); (M.M.); (E.B.); (M.G.); (M.P.); (E.B.)
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Semerák M, Sedlák J, Čmejla R. Clarithromycin Suppresses Apple Proliferation Phytoplasma in Explant Cultures. Plants (Basel) 2023; 12:3820. [PMID: 38005717 PMCID: PMC10674752 DOI: 10.3390/plants12223820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/13/2023] [Accepted: 11/08/2023] [Indexed: 11/26/2023]
Abstract
Apple proliferation, caused by 'Candidatus Phytoplasma mali', is one of the most important economic threats in the field of apple production. Especially at a young age, infected trees can be affected by excessive bud proliferation and general decline. The fruit quality is also significantly reduced by this disease. To investigate treatment options, we applied a clarithromycin chemotherapy to infected in vitro cultures of 'Golden Delicious'. With increasing concentrations of clarithromycin in the media, the phytoplasma load decreased rapidly after one month of treatment, but phytotoxicity led to a pronounced mortality at 40 mg/L, which was the highest dose used in our experiment. Out of 45 initial explants, we obtained one negative mericlone and two mericlones with a concentration of phytoplasma DNA at the detection limit of PCR. The culture propagated from the mericlone that tested negative remained phytoplasma-free after 18 months of subculturing. Our results suggest the applicability of macrolide antibiotics against phytoplasma infections in vitro; however, it might be challenging to find the threshold zone where the concentration is sufficient for pathogen elimination, but not lethal for the plant material of different cultivars.
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Affiliation(s)
- Matěj Semerák
- Research and Breeding Institute of Pomology Holovousy Ltd., 50801 Holovousy, Czech Republic
| | - Jiří Sedlák
- Research and Breeding Institute of Pomology Holovousy Ltd., 50801 Holovousy, Czech Republic
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Nedbalcova K, Bzdil J, Papouskova A, Zouharova M, Matiaskova K, Stastny K, Sladecek V, Senk D, Petr M, Stolar P. Pathotypes and Phenotypic Resistance to Antimicrobials of Escherichia coli Isolates from One-Day-Old Chickens. Pathogens 2023; 12:1330. [PMID: 38003794 PMCID: PMC10675333 DOI: 10.3390/pathogens12111330] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/03/2023] [Accepted: 11/07/2023] [Indexed: 11/26/2023] Open
Abstract
The aim of this work was to describe the pathotypes of Escherichia coli strains isolated from one-day-old chickens, as well as the occurrence of resistance and multidrug resistance (MDR) in these strains. A total of 429 mixed swabs from 4290 one-day-old chicks were examined between August 2021 and July 2023 (24 months) during routine point-of-destination inspections at 12 poultry farms in the Czech Republic. All samples were processed via cultivation methods using meat-peptone blood agar and Mc Conkey agar under aerobic conditions at 37 ± 1 °C for 18-24 h. The identification of the strains was performed using MALDI-TOF mass spectrometry. All confirmed strains of E. coli were screened via single or multiplex PCRs for the presence of genes encoding the virulence-associated factors iroN, cvaC, iss, felA, iutA, frz and tsh. Antimicrobial susceptibility tests were performed using the minimal inhibitory concentration (MIC) method, focusing on ampicillin, cefotaxime, tetracycline, doxycycline, enrofloxacin, florfenicol, amoxicillin with clavulanic acid and trimethoprim with sulfamethoxazole. A total of 321 E. coli strains (prevalence of 74.8%) were isolated, and 300 isolates were defined as avian pathogenic strains of E. coli (APEC) via multiplex PCR. Based on the defined virulence genes, the isolates were classified into 31 pathotypes. A total of 15.9% of the tested isolates were susceptible to all the tested antimicrobials. On the other hand, 20.5% of the isolates were identified as multidrug-resistant (8.7% of isolates were resistant to three antimicrobials, 7.3% to four antimicrobials, 3.6% to five antimicrobials and 0.9% to six antimicrobials). Monitoring pathogenic strains of E. coli in different animals and in the environment makes it possible to understand their spread in animal and human populations and, at the same time, reveal the sources of virulence and resistance genes.
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Affiliation(s)
- Katerina Nedbalcova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.); (K.S.)
| | - Jaroslav Bzdil
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (M.P.); (P.S.)
| | - Aneta Papouskova
- Institute of Infectious Diseases and Microbiology, Faculty of Veterinary Medicine, University of Veterinary Sciences, Palackeho 1–3, 612 42 Brno, Czech Republic;
| | - Monika Zouharova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.); (K.S.)
| | - Katarina Matiaskova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.); (K.S.)
| | - Kamil Stastny
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.); (K.S.)
| | - Vladimir Sladecek
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (M.P.); (P.S.)
| | - David Senk
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (M.P.); (P.S.)
| | - Matej Petr
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (M.P.); (P.S.)
| | - Petr Stolar
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (M.P.); (P.S.)
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16
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Krupa E, Krupová Z, Žáková E, Bauer J, Moravčíková N, Vrtková I. An Assessment of the Genetic Parameters of Boars' Reproductive Traits. Genes (Basel) 2023; 14:2003. [PMID: 38002946 PMCID: PMC10671126 DOI: 10.3390/genes14112003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 10/24/2023] [Accepted: 10/26/2023] [Indexed: 11/26/2023] Open
Abstract
The aim of this study was to estimate genetic parameters for the reproductive traits of boars based on single-nucleotide polymorphism data. A total of 109,836 semen samples from 2249 boars were collected between 2010 and 2022. Five basic traits were assessed: sperm volume, sperm concentration, motility, number of abnormal sperm, and, for the first time for the local population, libido. In addition, two derived traits were assessed: total sperm count and number of functional sperm. Genetic parameters were estimated using the single-step genomic best linear unbiased prediction method (ssGBLUP). Dam and sire breeds were evaluated separately. The five basic traits were evaluated using five-trait models, while the two derived traits were evaluated using single-trait models. The heritability coefficients had lower values for all sperm quality traits with both methods. For the basic traits, the heritability ranged from 0.099 to 0.342. The greatest difference between dam and sire breeds was observed for the heritability of the sperm concentration trait (0.099 and 0.271, respectively). The heritability of the libido trait was twice as high for boars of sire breeds as it was for boars of dam breeds. The genetic parameters estimated with ssGBLUP can be used in routine genetic evaluations to improve the pig breeding process.
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Affiliation(s)
- Emil Krupa
- Institute of Animal Science, 10400 Prague, Czech Republic; (Z.K.); (E.Ž.)
| | - Zuzana Krupová
- Institute of Animal Science, 10400 Prague, Czech Republic; (Z.K.); (E.Ž.)
| | - Eliška Žáková
- Institute of Animal Science, 10400 Prague, Czech Republic; (Z.K.); (E.Ž.)
| | - Jiří Bauer
- Czech-Moravian Breeders Association, 25209 Hradistko, Czech Republic;
| | - Nina Moravčíková
- Institute of Nutrition and Genomics, Slovak University of Agriculture, 94901 Nitra, Slovakia;
| | - Irena Vrtková
- Department of Morphology, Physiology and Animal Genetics, Mendel University, Zemedelska 1, 61300 Brno, Czech Republic;
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Bzdil J, Sladecek V, Senk D, Stolar P, Waicova Z, Kollertova N, Zouharova M, Matiaskova K, Linhart P, Nedbalcova K. Enterococci Isolated from One-Day-Old Chickens and Their Phenotypic Susceptibility to Antimicrobials in the Czech Republic. Antibiotics (Basel) 2023; 12:1487. [PMID: 37887187 PMCID: PMC10603836 DOI: 10.3390/antibiotics12101487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 09/22/2023] [Accepted: 09/26/2023] [Indexed: 10/28/2023] Open
Abstract
Our study describes the prevalence and spectrum of enterococci isolated from one-day-old chickens in the Czech Republic, their level of antimicrobial resistance, and the occurrence of multiresistance. Over a 24-month period from 1 August 2021 to 31 July 2023, a total of 464 mixed samples of one-day-old chicken organs were examined during routine inspections at 12 randomly selected poultry farms in the Czech Republic. The samples were processed via cultivation methods and suspected strains were confirmed using the MALDI-TOF Mass Spectrometry method. Antimicrobial susceptibility was determined using the MIC method for eight antimicrobials. A total of 128 isolates (prevalence of 27.6%) representing 4 species of enterococci were isolated, including Enterococcus faecalis, Enterococcus faecium, Enterococcus gallinarum, and Enterococcus hirae, with prevalence rates of 23.3%, 1.5%, 2.2%, and 0.6%, respectively. Susceptibility tests showed a high percentage of susceptible strains among E. faecalis, E. faecium, and E. gallinarum for penicillin-based antibiotics, sulfamethoxazole with trimethoprim, and florfenicol (80-100% susceptible strains). E. hirae was an exception, displaying complete resistance to enrofloxacin (0% susceptible strains) and a high degree of resistance to other tested antimicrobials (33.3% susceptible strains). Among the isolated strains, a total of 16 isolates (12.5%) showed resistance to 3 or more antimicrobials. Complete resistance to all eight antimicrobials simultaneously was observed in four isolates (3.1%). This research shows the possible sources of pathogenic enterococci and their virulence and resistance genes. The findings hold relevance for both veterinary and human medicine, contributing to a better understanding of enterococcal circulation in the human ecosystem and food chain, as well as the development of their resistance and multiresistance.
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Affiliation(s)
- Jaroslav Bzdil
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (P.S.)
| | - Vladimir Sladecek
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (P.S.)
| | - David Senk
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (P.S.)
| | - Petr Stolar
- Ptacy S.R.O., Valasska Bystrice 194, 756 27 Valašská Bystřice, Czech Republic; (J.B.); (V.S.); (D.S.); (P.S.)
| | - Zuzana Waicova
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University Olomouc, 17. Listopadu 1192, 779 00 Olomouc, Czech Republic; (Z.W.); (N.K.)
| | - Nela Kollertova
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University Olomouc, 17. Listopadu 1192, 779 00 Olomouc, Czech Republic; (Z.W.); (N.K.)
| | - Monika Zouharova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.)
| | - Katarina Matiaskova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.)
| | - Petr Linhart
- Institute of Animal Protection and Welfare and Public Veterinary Medicine, University of Veterinary Sciences, Palackeho 1–3, 612 42 Brno, Czech Republic;
| | - Katerina Nedbalcova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic; (M.Z.); (K.M.)
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18
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Xu F, Valappil AK, Mathiyalagan R, Tran TNA, Ramadhania ZM, Awais M, Yang DC. In Vitro Cultivation and Ginsenosides Accumulation in Panax ginseng: A Review. Plants (Basel) 2023; 12:3165. [PMID: 37687411 PMCID: PMC10489967 DOI: 10.3390/plants12173165] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 08/03/2023] [Accepted: 08/10/2023] [Indexed: 09/10/2023]
Abstract
The use of in vitro tissue culture for herbal medicines has been recognized as a valuable source of botanical secondary metabolites. The tissue culture of ginseng species is used in the production of bioactive compounds such as phenolics, polysaccharides, and especially ginsenosides, which are utilized in the food, cosmetics, and pharmaceutical industries. This review paper focuses on the in vitro culture of Panax ginseng and accumulation of ginsenosides. In vitro culture has been applied to study organogenesis and biomass culture, and is involved in direct organogenesis for rooting and shooting from explants and in indirect morphogenesis for somatic embryogenesis via the callus, which is a mass of disorganized cells. Biomass production was conducted with different types of tissue cultures, such as adventitious roots, cell suspension, and hairy roots, and subsequently on a large scale in a bioreactor. This review provides the cumulative knowledge of biotechnological methods to increase the ginsenoside resources of P. ginseng. In addition, ginsenosides are summarized at enhanced levels of activity and content with elicitor treatment, together with perspectives of new breeding tools which can be developed in P. ginseng in the future.
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Affiliation(s)
- Fengjiao Xu
- Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (F.X.); (T.N.A.T.); (Z.M.R.); (M.A.)
| | - Anjali Kariyarath Valappil
- Department of Biopharmaceutical Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (A.K.V.); (R.M.)
| | - Ramya Mathiyalagan
- Department of Biopharmaceutical Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (A.K.V.); (R.M.)
| | - Thi Ngoc Anh Tran
- Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (F.X.); (T.N.A.T.); (Z.M.R.); (M.A.)
| | - Zelika Mega Ramadhania
- Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (F.X.); (T.N.A.T.); (Z.M.R.); (M.A.)
| | - Muhammad Awais
- Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (F.X.); (T.N.A.T.); (Z.M.R.); (M.A.)
| | - Deok Chun Yang
- Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (F.X.); (T.N.A.T.); (Z.M.R.); (M.A.)
- Department of Biopharmaceutical Biotechnology, College of Life Science, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Republic of Korea; (A.K.V.); (R.M.)
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Vejřík L, Vejříková I, Blabolil P, Sajdlová Z, Kočvara L, Kolařík T, Bartoň D, Jůza T, Šmejkal M, Peterka J, Čech M. Trophic Position of the Species and Site Trophic State Affect Diet Niche and Individual Specialization: From Apex Predator to Herbivore. Biology (Basel) 2023; 12:1113. [PMID: 37626997 PMCID: PMC10452534 DOI: 10.3390/biology12081113] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 07/31/2023] [Accepted: 08/04/2023] [Indexed: 08/27/2023]
Abstract
Intra-species variability in isotopic niches, specifically isotopic total niche width (ITNW), isotopic individual niche width (IINW), and isotopic individual specialization (IIS), was studied using an innovative approach without sacrificing the vertebrates. Stable isotopes (δ13C, δ15N) in four body tissues differing in isotopic half-life were analyzed from four freshwater fish species representing different trophic positions. ITNW was widest for the apex predator (European catfish) and narrowest for the obligate predator (Northern pike). IINW exhibited a polynomial trend for the European catfish, Northern pike, and Eurasian perch (mesopredator), decreasing with body mass and increasing again after exceeding a certain species-dependent body mass threshold. Thus, for ectotherms, apex predator status is linked rather to its size than to the species. In herbivores (rudd), IINW increased with body mass. The IIS of predators negatively correlated with site trophic state. Therefore, eutrophication can significantly change the foraging behavior of certain species. We assume that the observed trends will occur in other species at similar trophic positions in either aquatic or terrestrial systems. For confirmation, we recommend conducting a similar study on other species in different habitats.
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Affiliation(s)
- Lukáš Vejřík
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Ivana Vejříková
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Petr Blabolil
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
- Faculty of Science, University of South Bohemia in České Budějovice, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Zuzana Sajdlová
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Luboš Kočvara
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Tomáš Kolařík
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Daniel Bartoň
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Tomáš Jůza
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Marek Šmejkal
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Jiří Peterka
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
| | - Martin Čech
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, Na Sádkách 7, 37005 České Budějovice, Czech Republic; (L.V.); (P.B.); (Z.S.); (L.K.); (T.K.); (D.B.); (T.J.); (M.Š.); (J.P.); (M.Č.)
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20
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Hanková K, Lupoměská P, Nový P, Všetečka D, Klouček P, Kouřimská L, Hlebová M, Božik M. Effect of Conventional Preservatives and Essential Oils on the Survival and Growth of Escherichia coli in Vegetable Sauces: A Comparative Study. Foods 2023; 12:2832. [PMID: 37569101 PMCID: PMC10417619 DOI: 10.3390/foods12152832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 07/17/2023] [Accepted: 07/21/2023] [Indexed: 08/13/2023] Open
Abstract
Essential oils have gained attention as natural alternatives to chemical preservatives in food preservation. However, more information is needed regarding consumer acceptance of essential oils in actual food products. This study aimed to compare the effects of conventional preservatives, heat treatment, and essential oils derived from thyme, oregano, and lemongrass on the survival and growth of pathogenic Escherichia coli in vegetable sauces. The results demonstrated a gradual decrease in pathogen numbers over time, even in untreated samples. On the fifth day of storage, heat treatment, sodium chloride, and acidification using citric acid (pH 3.2) exhibited reductions of 4.4 to 5.3 log CFU/g compared to the untreated control. Among the essential oils tested, lemongrass essential oil at a concentration of 512 mg/kg demonstrated the most remarkable effectiveness, resulting in a reduction of 1.9 log CFU/g compared to the control. Fifteen days after treatment, the control samples exhibited a contamination rate of 6.2 log CFU/g, while E. coli numbers in treated samples with heat, sodium chloride, citric acid (pH 3.2), and lemongrass essential oil (512 mg/kg) were below the detection limits. Additionally, sensory evaluation was conducted to assess the acceptability of the treated samples. The findings provide valuable insights into the potential utilisation of essential oils as natural preservatives in vegetable sauces and their impact on consumer acceptance.
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Affiliation(s)
- Kateřina Hanková
- Department of Food Science, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic (P.L.); (P.N.); (P.K.)
| | - Petra Lupoměská
- Department of Food Science, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic (P.L.); (P.N.); (P.K.)
| | - Pavel Nový
- Department of Food Science, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic (P.L.); (P.N.); (P.K.)
| | - Daniel Všetečka
- Palíto Family s.r.o., Kamýcká 1281, 165 00 Prague, Czech Republic;
| | - Pavel Klouček
- Department of Food Science, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic (P.L.); (P.N.); (P.K.)
| | - Lenka Kouřimská
- Department of Microbiology Nutrition and Dietetics, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic;
| | - Miroslava Hlebová
- Department of Biology, University of Ss. Cyril and Methodius in Trnava, Nám. J. Herdu 2, 917 01 Trnava, Slovakia;
| | - Matěj Božik
- Department of Food Science, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic (P.L.); (P.N.); (P.K.)
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21
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Béres T, Štefelová N, Ćavar Zeljković S, Kopecký P. Profiling of Health-Promoting and Taste-Relevant Compounds in Sixteen Radish ( Raphanus sativus L.) Genotypes Grown under Controlled Conditions. Foods 2023; 12:2823. [PMID: 37569094 PMCID: PMC10417565 DOI: 10.3390/foods12152823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 07/20/2023] [Accepted: 07/24/2023] [Indexed: 08/13/2023] Open
Abstract
It is becoming increasingly challenging to maintain crop yields and quality as the global climate changes. The aim of this study was to determine whether and how the profile of health-promoting and taste-related compounds of radishes changes within a growing season. A total of 16 radish (Raphanus sativus L.) genotypes that are commercially available on the Czech market were assessed by means of chemical analysis. Radishes were cultivated in three independent growing cycles under controlled conditions, and the effects of the genotype and growing cycle, as well as their interactions, on the chemical traits were evaluated. Most of the variability in chemical composition was associated with the growing cycle, which accounted for 51.53% of total variance, followed by the genotype (26% of total variance). The interaction between the growing cycle and genotype explained 22.47% of total variance. The growing cycle had the strongest effect on amino acid profiles. More specifically, the amino acids that are known to contribute to overall taste (glycine, along with glutamic and aspartic acids) showed the highest degree of variation, while the amino acids related to glucosinolate biosynthesis (methionine, isoleucine, tryptophan, and phenylalanine) showed relatively low variability. On the other hand, indole glucosinolates were found to differ the most between genotypes.
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Affiliation(s)
- Tibor Béres
- Czech Advanced Technology and Research Institute, Palacky University, Šlechtitelů 27, 78371 Olomouc, Czech Republic; (T.B.); (N.Š.)
| | - Nikola Štefelová
- Czech Advanced Technology and Research Institute, Palacky University, Šlechtitelů 27, 78371 Olomouc, Czech Republic; (T.B.); (N.Š.)
| | - Sanja Ćavar Zeljković
- Centre of the Region Haná for Biotechnological and Agricultural Research, Department of Genetic Resources for Vegetables, Medicinal and Special Plants, Crop Research Institute, Šlechtitelů 29, 78371 Olomouc, Czech Republic;
| | - Pavel Kopecký
- Centre of the Region Haná for Biotechnological and Agricultural Research, Department of Genetic Resources for Vegetables, Medicinal and Special Plants, Crop Research Institute, Šlechtitelů 29, 78371 Olomouc, Czech Republic;
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22
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Sedláková V, Zeljković SĆ, Štefelová N, Smýkal P, Hanáček P. Phenylpropanoid Content of Chickpea Seed Coats in Relation to Seed Dormancy. Plants (Basel) 2023; 12:2687. [PMID: 37514301 PMCID: PMC10384132 DOI: 10.3390/plants12142687] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 07/07/2023] [Accepted: 07/07/2023] [Indexed: 07/30/2023]
Abstract
The physical dormancy of seeds is likely to be mediated by the chemical composition and the thickness of the seed coat. Here, we investigate the link between the content of phenylpropanoids (i.e., phenolics and flavonoids) present in the chickpea seed coat and dormancy. The relationship between selected phenolic and flavonoid metabolites of chickpea seed coats and dormancy level was assessed using wild and cultivated chickpea parental genotypes and a derived population of recombinant inbred lines (RILs). The selected phenolic and flavonoid metabolites were analyzed via the LC-MS/MS method. Significant differences in the concentration of certain phenolic acids were found among cultivated (Cicer arietinum, ICC4958) and wild chickpea (Cicer reticulatum, PI489777) parental genotypes. These differences were observed in the contents of gallic, caffeic, vanillic, syringic, p-coumaric, salicylic, and sinapic acids, as well as salicylic acid-2-O-β-d-glucoside and coniferaldehyde. Additionally, significant differences were observed in the flavonoids myricetin, quercetin, luteolin, naringenin, kaempferol, isoorientin, orientin, and isovitexin. When comparing non-dormant and dormant RILs, significant differences were observed in gallic, 3-hydroxybenzoic, syringic, and sinapic acids, as well as the flavonoids quercitrin, quercetin, naringenin, kaempferol, and morin. Phenolic acids were generally more highly concentrated in the wild parental genotype and dormant RILs. We compared the phenylpropanoid content of chickpea seed coats with related legumes, such as pea, lentil, and faba bean. This information could be useful in chickpea breeding programs to reduce dormancy.
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Affiliation(s)
- Veronika Sedláková
- Department of Plant Biology, Mendel University in Brno, 613 00 Brno, Czech Republic
| | - Sanja Ćavar Zeljković
- Department of Genetic Resources for Vegetables, Medicinal and Special Plants, Crop Research Institute, 783 71 Olomouc, Czech Republic
- Czech Advanced Technology and Research Institute, Palacký University, 783 71 Olomouc, Czech Republic
| | - Nikola Štefelová
- Czech Advanced Technology and Research Institute, Palacký University, 783 71 Olomouc, Czech Republic
| | - Petr Smýkal
- Department of Botany, Faculty of Science, Palacký University, 783 71 Olomouc, Czech Republic
| | - Pavel Hanáček
- Department of Plant Biology, Mendel University in Brno, 613 00 Brno, Czech Republic
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23
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Korena K, Krzyzankova M, Florianova M, Karasova D, Babak V, Strakova N, Juricova H. Microbial Succession in the Cheese Ripening Process-Competition of the Starter Cultures and the Microbiota of the Cheese Plant Environment. Microorganisms 2023; 11:1735. [PMID: 37512907 PMCID: PMC10385115 DOI: 10.3390/microorganisms11071735] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 06/26/2023] [Accepted: 06/29/2023] [Indexed: 07/30/2023] Open
Abstract
A large variety of cheeses can be produced using different manufacturing processes and various starter or adjunct cultures. In this study, we have described the succession of the microbial population during the commercial production and subsequent ripening of smear-ripened cheese using 16S rRNA gene sequencing. The composition of the microbiota during the first 6 days of production was constant and consisted mainly of LAB (lactic acid bacteria) originating from the starter culture. From day 7, the proportion of LAB decreased as other bacteria from the production environment appeared. From the 14th day of production, the relative proportion of LAB decreased further, and at the end of ripening, bacteria from the environment wholly dominated. These adventitious microbiota included Psychrobacter, Pseudoalteromonas haloplanktis/hodoensis, Vibrio toranzoniae, and Vibrio litoralis (Proteobacteria phylum), as well as Vagococcus and Marinilactibacillus (Firmicutes phylum), Psychrilyobacter (Fusobacteria phylum), and Malaciobacter marinus (Campylobacterota phylum), all of which appeared to be characteristic taxa associated with the cheese rind. Subsequent analysis showed that the production and ripening of smear-ripened cheese could be divided into three stages, and that the microbiota compositions of samples from the first week of production, the second week of production, and supermarket shelf life all differed.
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Affiliation(s)
- Kristyna Korena
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic
| | | | - Martina Florianova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic
| | - Daniela Karasova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic
| | - Vladimir Babak
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic
| | - Nicol Strakova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic
| | - Helena Juricova
- Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic
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24
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Kyselová J, Tichý L, Sztankóová Z, Marková J, Kavanová K, Beinhauerová M, Mušková M. Comparative Characterization of Immune Response in Sheep with Caseous Lymphadenitis through Analysis of the Whole Blood Transcriptome. Animals (Basel) 2023; 13:2144. [PMID: 37443943 DOI: 10.3390/ani13132144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 06/26/2023] [Accepted: 06/27/2023] [Indexed: 07/15/2023] Open
Abstract
Caseous lymphadenitis (CL) is a chronic contagious disease that affects small ruminants and is characterized by the formation of pyogranulomas in lymph nodes and other organs. However, the pathogenesis of this disease and the response of the host genome to infection are not yet fully understood. This study aimed to investigate the whole blood transcriptome and evaluate differential gene expression during the later stages of CL in naturally infected ewes. The study included diseased, serologically positive (EP), exposed, serologically negative (EN) ewes from the same infected flock and healthy ewes (CN) from a different flock. RNA sequencing was performed using the Illumina NextSeq system, and differential gene expression was estimated using DESeq2 and Edge R approaches. The analysis identified 191 annotated differentially expressed genes (DEGs) in the EP group (102 upregulated and 89 downregulated) and 256 DEGs in the EN group (106 upregulated and 150 downregulated) compared to the CN group. Numerous immunoregulatory interactions between lymphoid and nonlymphoid cells were influenced in both EP and EN ewes. Immune DEGs were preferentially assigned to antigen presentation through the MHC complex, T lymphocyte-mediated immunity, and extracellular matrix interactions. Furthermore, the EP group showed altered regulation of cytokine and chemokine signaling and activation and recombination of B-cell receptors. Conversely, NF-kappa B signaling, apoptosis, and stress response were the main processes influenced in the EN group. In addition, statistically significant enrichment of the essential immune pathways of binding and uptake of ligands by scavenger receptors in EP and p53 signaling in the EN group was found. In conclusion, this study provides new insights into the disease course and host-pathogen interaction in naturally CL-infected sheep by investigating the blood transcriptome.
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Affiliation(s)
- Jitka Kyselová
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic
| | - Ladislav Tichý
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic
- Department of Genetics and Breeding, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, 165 00 Prague, Czech Republic
| | - Zuzana Sztankóová
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic
| | - Jiřina Marková
- Department of Microbiology and Antimicrobial Resistance, Veterinary Research Institute, 621 00 Brno, Czech Republic
| | - Kateřina Kavanová
- Department of Microbiology and Antimicrobial Resistance, Veterinary Research Institute, 621 00 Brno, Czech Republic
| | - Monika Beinhauerová
- Department of Microbiology and Antimicrobial Resistance, Veterinary Research Institute, 621 00 Brno, Czech Republic
| | - Michala Mušková
- Department of Genetics and Breeding of Farm Animals, Institute of Animal Science, 104 00 Prague, Czech Republic
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Astuti PK, Gavojdian D, Ilie DE, Wanjala G, Monori I, Bagi Z, Kusza S. Genetic polymorphism in European and African sheep breeds reared in Hungary based on 48 SNPs associated with resistance to gastrointestinal parasite infection using KASP-PCR technique. Trop Anim Health Prod 2023; 55:197. [PMID: 37160635 PMCID: PMC10169887 DOI: 10.1007/s11250-023-03609-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 04/27/2023] [Indexed: 05/11/2023]
Abstract
This pilot study used an alternative and economically efficient technique, the Kompetitive Allele-Specific Polymerase Chain Reaction (KASP-PCR) to examine 48 SNPs from 11 parasite-resistance genes found on 8 chromosomes in 110 animals from five sheep breeds reared in Hungary; Hungarian Tsigai, White Dorper, Dorper, Ile de France, and Hungarian Merino. Allele and genotype frequencies, fixation index, observed heterozygosity, expected heterozygosity, F statistic, and their relationship with the Hardy-Weinberg equilibrium (WHE) and the polymorphic information content (PIC) were determined, followed by principal component analysis (PCA). As much as 32 SNPs out of the 48 initially studied were successfully genotyped. A total of 9 SNPs, 4 SNPs in TLR5, 1 SNP in TLR8, and 4 SNPs in TLR2 genes, were polymorphic. The variable genotype and allele frequency of the TLRs gene indicated genetic variability among the studied sheep breeds, with the Hungarian Merino exhibiting the most polymorphisms, while Dorper was the population with the most SNPs departing from the HWE. According to the PIC value, the rs430457884-TLR2, rs55631273-TLR2, and rs416833129-TLR5 were found to be informative in detecting polymorphisms among individuals within the populations, whereas the rs429546187-TLR5 and rs424975389-TLR5 were found to have a significant influence in clustering the population studied. This study reported a moderate level of genetic variability and that a low to moderate within-breed diversity was maintained in the studied populations.
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Affiliation(s)
- Putri Kusuma Astuti
- Centre for Agricultural Genomics and Biotechnology, University of Debrecen, Debrecen, 4032, Hungary
- Doctoral School of Animal Science, University of Debrecen, Debrecen, 4032, Hungary
- Department of Animal Breeding and Reproduction, Faculty of Animal Science, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia
| | - Dinu Gavojdian
- Research and Development Institute for Bovine Balotesti, 77015, Balotesti, Ilfov, Romania
| | | | - George Wanjala
- Centre for Agricultural Genomics and Biotechnology, University of Debrecen, Debrecen, 4032, Hungary
- Doctoral School of Animal Science, University of Debrecen, Debrecen, 4032, Hungary
| | | | - Zoltán Bagi
- Centre for Agricultural Genomics and Biotechnology, University of Debrecen, Debrecen, 4032, Hungary
| | - Szilvia Kusza
- Centre for Agricultural Genomics and Biotechnology, University of Debrecen, Debrecen, 4032, Hungary.
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Cruz Fabian DR, Durpekova S, Dusankova M, Cisar J, Drohsler P, Elich O, Borkova M, Cechmankova J, Sedlarik V. Renewable Poly(Lactic Acid)Lignocellulose Biocomposites for the Enhancement of the Water Retention Capacity of the Soil. Polymers (Basel) 2023; 15:polym15102243. [PMID: 37242817 DOI: 10.3390/polym15102243] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 05/04/2023] [Accepted: 05/05/2023] [Indexed: 05/28/2023] Open
Abstract
This manuscript details the preparation and characterization of a renewable biocomposite material intended as a soil conditioner based on low-molecular-weight poly(lactic acid) (PLA) and residual biomass (wheat straw and wood sawdust). The swelling properties and biodegradability of the PLA-lignocellulose composite under environmental conditions were evaluated as indicators of its potential for applications in soil. Its mechanical and structural properties were characterized by differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), Fourier-transform infrared spectroscopy (FTIR), and scanning electron microscopy (SEM). Results showed that the incorporation of lignocellulose waste material into PLA increased the swelling ratio of the biocomposite by up to 300%. The application of the biocomposite of 2 wt% in soil enhanced its capacity for water retention by 10%. In addition, the cross-linked structure of the material proved to be capable of swelling and deswelling repeatedly, indicating its good reusability. Incorporating lignocellulose waste in the PLA enhanced its stability in the soil environment. After 50 days of the experiment, almost 50% of the sample had degraded in the soil.
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Affiliation(s)
- Dalila Rubicela Cruz Fabian
- Centre of Polymer Systems, University Institute, Tomas Bata University in Zlin, Tr. T. Bati 5678, 760 01 Zlin, Czech Republic
| | - Silvie Durpekova
- Centre of Polymer Systems, University Institute, Tomas Bata University in Zlin, Tr. T. Bati 5678, 760 01 Zlin, Czech Republic
| | - Miroslava Dusankova
- Centre of Polymer Systems, University Institute, Tomas Bata University in Zlin, Tr. T. Bati 5678, 760 01 Zlin, Czech Republic
| | - Jaroslav Cisar
- Centre of Polymer Systems, University Institute, Tomas Bata University in Zlin, Tr. T. Bati 5678, 760 01 Zlin, Czech Republic
| | - Petra Drohsler
- Centre of Polymer Systems, University Institute, Tomas Bata University in Zlin, Tr. T. Bati 5678, 760 01 Zlin, Czech Republic
| | - Ondrej Elich
- Dairy Research Institute, Ke Dvoru 12a, 160 00 Prague, Czech Republic
| | - Marketa Borkova
- Dairy Research Institute, Ke Dvoru 12a, 160 00 Prague, Czech Republic
| | - Jarmila Cechmankova
- Research Institute for Soil and Water Conservation, Zabovreska 250, 15627 Prague, Czech Republic
| | - Vladimir Sedlarik
- Centre of Polymer Systems, University Institute, Tomas Bata University in Zlin, Tr. T. Bati 5678, 760 01 Zlin, Czech Republic
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Pavlovič A, Vrobel O, Tarkowski P. Water Cannot Activate Traps of the Carnivorous Sundew Plant Drosera capensis: On the Trail of Darwin's 150-Years-Old Mystery. Plants (Basel) 2023; 12:plants12091820. [PMID: 37176877 PMCID: PMC10181276 DOI: 10.3390/plants12091820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 04/21/2023] [Accepted: 04/25/2023] [Indexed: 05/15/2023]
Abstract
In his famous book Insectivorous plants, Charles Darwin observed that the bending response of tentacles in the carnivorous sundew plant Drosera rotundifolia was not triggered by a drop of water, but rather the application of many dissolved chemicals or mechanical stimulation. In this study, we tried to reveal this 150-years-old mystery using methods not available in his time. We measured electrical signals, phytohormone tissue level, enzyme activities and an abundance of digestive enzyme aspartic protease droserasin in response to different stimuli (water drop, ammonia, mechanostimulation, chitin, insect prey) in Cape sundew (Drosera capensis). Drops of water induced the lowest number of action potentials (APs) in the tentacle head, and accumulation of jasmonates in the trap was not significantly different from control plants. On the other hand, all other stimuli significantly increased jasmonate accumulation; the highest was found after the application of insect prey. Drops of water also did not induce proteolytic activity and an abundance of aspartic protease droserasin in contrast to other stimuli. We found that the tentacles of sundew plants are not responsive to water drops due to an inactive jasmonic acid signalling pathway, important for the induction of significant digestive enzyme activities.
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Affiliation(s)
- Andrej Pavlovič
- Department of Biophysics, Faculty of Science, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic
| | - Ondřej Vrobel
- Czech Advanced Technology and Research Institute, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic
- Centre of the Region Haná for Biotechnological and Agricultural Research, Department of Genetic Resources for Vegetables, Medicinal and Special Plants, Crop Research Institute, Šlechtitelů 29, CZ-783 71 Olomouc, Czech Republic
| | - Petr Tarkowski
- Czech Advanced Technology and Research Institute, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic
- Centre of the Region Haná for Biotechnological and Agricultural Research, Department of Genetic Resources for Vegetables, Medicinal and Special Plants, Crop Research Institute, Šlechtitelů 29, CZ-783 71 Olomouc, Czech Republic
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Čmejlová J, Paprštein F, Suran P, Zelený L, Čmejla R. A New One-Tube Reaction Assay for the Universal Determination of Sweet Cherry ( Prunus avium L.) Self-(In)Compatible MGST- and S-Alleles Using Capillary Fragment Analysis. Int J Mol Sci 2023; 24:ijms24086931. [PMID: 37108095 PMCID: PMC10139232 DOI: 10.3390/ijms24086931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 04/04/2023] [Accepted: 04/06/2023] [Indexed: 04/29/2023] Open
Abstract
The sweet cherry plant (Prunus avium L.) is primarily self-incompatible, with so-called S-alleles responsible for the inability of flowers to be pollinated not only by their own pollen grains but also by pollen from other cherries having the same S-alleles. This characteristic has wide-ranging impacts on commercial growing, harvesting, and breeding. However, mutations in S-alleles as well as changes in the expression of M locus-encoded glutathione-S-transferase (MGST) can lead to complete or partial self-compatibility, simplifying orchard management and reducing possible crop losses. Knowledge of S-alleles is important for growers and breeders, but current determination methods are challenging, requiring several PCR runs. Here we present a system for the identification of multiple S-alleles and MGST promoter variants in one-tube PCR, with subsequent fragment analysis on a capillary genetic analyzer. The assay was shown to unequivocally determine three MGST alleles, 14 self-incompatible S-alleles, and all three known self-compatible S-alleles (S3', S4', S5') in 55 combinations tested, and thus it is especially suitable for routine S-allele diagnostics and molecular marker-assisted breeding for self-compatible sweet cherries. In addition, we identified a previously unknown S-allele in the 'Techlovicka´ genotype (S54) and a new variant of the MGST promoter with an 8-bp deletion in the ´Kronio´ cultivar.
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Affiliation(s)
- Jana Čmejlová
- Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic
| | - František Paprštein
- Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic
| | - Pavol Suran
- Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic
| | - Lubor Zelený
- Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic
| | - Radek Čmejla
- Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic
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Gašparík M, Szencziová I, Ducháček J, Tóthová Tarová E, Stádník L, Nagy M, Kejdová Rysová L, Vrhel M, Legarová V. Complex Relationships between Milking-Induced Changes in Teat Structures and Their Pre-Milking Dimensions in Holstein Cows. Animals (Basel) 2023; 13:ani13061085. [PMID: 36978626 PMCID: PMC10044690 DOI: 10.3390/ani13061085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 02/28/2023] [Accepted: 03/15/2023] [Indexed: 03/30/2023] Open
Abstract
The study aimed to explore the relationship between teat structure dimensions and their short-term reaction to milking, to find the optimal dimensions of teat structures in relation to milking-induced teat tissue changes. Teat structures (teat length, canal length, thickness at barrel and apex, wall and cistern width) were measured by ultrasonography before and after milking for 38 Holstein cows at the beginning, middle, and end of lactation. We found that milking-induced changes in teat structures significantly depended on their pre-milking size. Furthermore, we observed that some teat structures and their changes were interconnected, and some did not affect each other. For example, changes in the barrel thickness and cistern width were affected by all structures, while the canal and apex did not influence each other. We deduced that more favorable changes were observed for teats of medium length, medium barrel and apex thickness, with teat canals of medium length, but with wider cisterns and thinner walls. The results of this study may help improve research in the area of milking-induced changes in teat morphology. Our findings could help understand potential health risks to animals in relation to teat morphology, milking equipment, and machine settings.
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Affiliation(s)
- Matúš Gašparík
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic
| | - Iveta Szencziová
- Department of Biology, Faculty of Education, J. Selye University in Komárno, Bratislavská cesta 3322, 945 01 Komárno, Slovakia
| | - Jaromír Ducháček
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic
| | - Eva Tóthová Tarová
- Department of Biology, Faculty of Education, J. Selye University in Komárno, Bratislavská cesta 3322, 945 01 Komárno, Slovakia
| | - Luděk Stádník
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic
| | - Melinda Nagy
- Department of Biology, Faculty of Education, J. Selye University in Komárno, Bratislavská cesta 3322, 945 01 Komárno, Slovakia
| | - Lucie Kejdová Rysová
- Department of Food Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic
| | - Marek Vrhel
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic
| | - Veronika Legarová
- Department of Food Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic
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Wang K, Wen Z, Asiegbu FO. The dark septate endophyte Phialocephala sphaeroides suppresses conifer pathogen transcripts and promotes root growth of Norway spruce. Tree Physiol 2022; 42:2627-2639. [PMID: 35878416 PMCID: PMC9743008 DOI: 10.1093/treephys/tpac089] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Accepted: 07/14/2022] [Indexed: 06/15/2023]
Abstract
Plant-associated microbes including dark septate endophytes (DSEs) of forest trees play diverse functional roles in host fitness including growth promotion and increased defence. However, little is known about the impact on the fungal transcriptome and metabolites during tripartite interaction involving plant host, endophyte and pathogen. To understand the transcriptional regulation of endophyte and pathogen during co-infection, Norway spruce (Picea abies) seedlings were infected with DSE Phialocephala sphaeroides, or conifer root-rot pathogen Heterobasidion parviporum, or both. Phialocephala sphaeroides showed low but stable transcripts abundance (a decrease of 40%) during interaction with Norway spruce and conifer pathogen. By contrast, H. parviporum transcripts were significantly reduced (92%) during co-infection. With RNA sequencing analysis, P. sphaeroides experienced a shift from cell growth to anti-stress and antagonistic responses, while it repressed the ability of H. parviporum to access carbohydrate nutrients by suppressing its carbohydrate/polysaccharide-degrading enzyme machinery. The pathogen on the other hand secreted cysteine peptidase to restrict free growth of P. sphaeroides. The expression of both DSE P. sphaeroides and pathogen H. parviporum genes encoding plant growth promotion products were equally detected in both dual and tripartite interaction systems. This was further supported by the presence of tryptophan-dependent indolic compound in liquid culture of P. sphaeroides. Norway spruce and Arabidopsis seedlings treated with P. sphaeroides culture filtrate exhibited auxin-like phenotypes, such as enhanced root hairs, and primary root elongation at low concentration but shortened primary root at high concentration. The results suggested that the presence of the endophyte had strong repressive or suppressive effect on H. parviporum transcripts encoding genes involved in nutrient acquisition.
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Affiliation(s)
- Kai Wang
- Corresponding authors: K.Wang (; ) and F.Asiegbu ()
| | - Zilan Wen
- Department of Forest Sciences, University of Helsinki, PO Box 27, Helsinki FIN-00014, Finland
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Wen Z, Terhonen E, Asiegbu FO. The dark septate endophyte Phialocephala sphaeroides confers growth fitness benefits and mitigates pathogenic effects of Heterobasidion on Norway spruce. Tree Physiol 2022; 42:891-906. [PMID: 34791486 PMCID: PMC9000907 DOI: 10.1093/treephys/tpab147] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 11/09/2021] [Indexed: 05/27/2023]
Abstract
Forest trees frequently interact with a diverse range of microorganisms including dark septate endophytes (DSEs) and fungal pathogens. Plant defense responses to either individual pathogens or endophytes have been widely studied, but very little is known on the effect of coinfection on host defenses. To study the impact of coinfection or tripartite interaction on plant growth and host defenses, Norway spruce (Picea abies (L.) Karst) seedlings were inoculated with a DSE Phialocephala sphaeroides or with a root pathogen Heterobasidion parviporum Niemela & Korhonen or coinfected with both fungi. The results showed that the DSE promoted the root growth of spruce seedlings. Control seedlings without any inoculum were subjected to sequencing and used as a baseline for identification of differentially expressed genes (DEGs). RNA-seq analysis of seedlings inoculated with P. sphaeroides, infected with H. parviporum or coinfected with both fungi resulted in a total of 5269 DEGs. The majority of DEGs were found in P. sphaeroides-inoculated seedlings. Lignin biosynthesis pathways were generally activated during fungal infections. The pattern was distinct with endophyte inoculation. The majority of the genes in the flavonoid biosynthesis pathway were generally suppressed during fungal infections. A specific transcriptional response to P. sphaeroides inoculation was the increased transcripts of genes involved in jasmonic acid biosynthesis, mitogen-activated protein kinases signaling pathway, plant hormone signal transduction and calcium-mediated signaling. This may have potentially contributed to promoting the root growth of seedlings. Although the coinfection suppressed the induction of numerous genes, no negative effect on the growth of the spruce seedlings occurred. We conclude that the subsequent H. parviporum infection triggered reprogramming of host metabolism. Conversely, the endophyte (P. sphaeroides), on the other hand, counteracted the negative effects of H. parviporum on the growth of the spruce seedlings.
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Affiliation(s)
- Zilan Wen
- Faculty of Agriculture and Forestry, University of Helsinki, Helsinki 00790, Finland
| | - Eeva Terhonen
- Natural Resources Institute Finland (Luke), Helsinki 00790, Finland
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Zemek R, Konopická J, Jozová E, Skoková Habuštová O. Virulence of Beauveria bassiana Strains Isolated from Cadavers of Colorado Potato Beetle, Leptinotarsa decemlineata. Insects 2021; 12:1077. [PMID: 34940165 PMCID: PMC8703872 DOI: 10.3390/insects12121077] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 11/11/2021] [Accepted: 11/29/2021] [Indexed: 11/16/2022]
Abstract
The Colorado potato beetle, Leptinotarsa decemlineata (Say), is a serious, widely distributed pest of potato and other crops. This pest is able to defoliate the host plant and cause severe yield loss. Moreover, the pest quickly becomes resistant to many chemical pesticides. Therefore, the development of novel biopesticides targeting this pest is urgently needed. The purpose of this study was to obtain new strains of the entomopathogenic fungus Beauveria bassiana and assess their efficacy against L. decemlineata adults under laboratory conditions. Twelve strains were isolated from cadavers of Colorado potato beetles collected in potato fields in the Czech Republic. Test beetles were treated by suspensions of conidia at the concentration of 1 × 107 spores per milliliter and their survival was recorded daily for three weeks. The results of the bioassays revealed that all new native strains were pathogenic to L. decemlineata adults and caused mortality up to 100% at the end of the trial period with an LT50 of about 7 days. These strains were more virulent than a reference strain GHA and some of them can be recommended for the development of a new mycoinsecticide against L. decemlineata. Our findings also highlight the importance of searching for perspective strains of entomopathogenic fungi among naturally infected hosts.
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Affiliation(s)
- Rostislav Zemek
- Biology Centre CAS, Institute of Entomology, 370 05 České Budějovice, Czech Republic; (J.K.); (O.S.H.)
| | - Jana Konopická
- Biology Centre CAS, Institute of Entomology, 370 05 České Budějovice, Czech Republic; (J.K.); (O.S.H.)
| | - Eva Jozová
- Department of Genetics and Agricultural Biotechnology, Faculty of Agriculture, University of South Bohemia, 370 05 České Budějovice, Czech Republic;
| | - Oxana Skoková Habuštová
- Biology Centre CAS, Institute of Entomology, 370 05 České Budějovice, Czech Republic; (J.K.); (O.S.H.)
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Muselík J, Komersová A, Kubová K, Matzick K, Skalická B. A Critical Overview of FDA and EMA Statistical Methods to Compare In Vitro Drug Dissolution Profiles of Pharmaceutical Products. Pharmaceutics 2021; 13:1703. [PMID: 34683995 PMCID: PMC8539859 DOI: 10.3390/pharmaceutics13101703] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 10/12/2021] [Accepted: 10/13/2021] [Indexed: 11/25/2022] Open
Abstract
A drug dissolution profile is one of the most critical dosage form characteristics with immediate and controlled drug release. Comparing the dissolution profiles of different pharmaceutical products plays a key role before starting the bioequivalence or stability studies. General recommendations for dissolution profile comparison are mentioned by the EMA and FDA guidelines. However, neither the EMA nor the FDA provides unambiguous instructions for comparing the dissolution curves, except for calculating the similarity factor f2. In agreement with the EMA and FDA strategy for comparing the dissolution profiles, this manuscript provides an overview of suitable statistical methods (CI derivation for f2 based on bootstrap, CI derivation for the difference between reference and test samples, Mahalanobis distance, model-dependent approach and maximum deviation method), their procedures and limitations. However, usage of statistical approaches for the above-described methods can be met with difficulties, especially when combined with the requirement of practice for robust and straightforward techniques for data evaluation. Therefore, the bootstrap to derive the CI for f2 or CI derivation for the difference between reference and test samples was selected as the method of choice.
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Affiliation(s)
- Jan Muselík
- Department of Pharmaceutical Technology, Faculty of Pharmacy, Masaryk University, Palackého tř. 1, 612 00 Brno, Czech Republic; (J.M.); (K.K.)
| | - Alena Komersová
- Department of Physical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic; (K.M.); (B.S.)
| | - Kateřina Kubová
- Department of Pharmaceutical Technology, Faculty of Pharmacy, Masaryk University, Palackého tř. 1, 612 00 Brno, Czech Republic; (J.M.); (K.K.)
| | - Kevin Matzick
- Department of Physical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic; (K.M.); (B.S.)
| | - Barbora Skalická
- Department of Physical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic; (K.M.); (B.S.)
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Podder R, Glahn RP, Vandenberg A. Dual-Fortified Lentil Products-A Sustainable New Approach to Provide Additional Bioavailable Iron and Zinc in Humans. Curr Dev Nutr 2021; 5:nzab004. [PMID: 33628987 PMCID: PMC7888699 DOI: 10.1093/cdn/nzab004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 01/04/2021] [Accepted: 01/26/2021] [Indexed: 12/16/2022] Open
Abstract
BACKGROUND Iron (Fe) and zinc (Zn) deficiencies are global health problems affecting 20% and 33% of the world's population, respectively. Lentil (Lens culinaris Medik.), part of the staple food supply in many countries, can be a potential vehicle for Fe and Zn fortification. OBJECTIVE We developed a dual-fortification protocol to fortify 3 milled lentil product types (LPTs) [red-football (RF), red-split (RS), and yellow-split (YS)], with NaFeEDTA and ZnSO4.H2O to increase the bioavailable content of Fe and Zn. METHODS Appropriate Fe and Zn doses were determined to fortify lentils based on RDAs. Relative Fe bioavailability (RFeB%) and phytic acid (PA) content were assessed using an in vitro Caco-2 cell bioassay and PA analysis, respectively. One-factor ANOVA determined the differences in colorimetric score; concentrations of Fe, Zn, and PA; and RFeB% among samples. The least significant difference was calculated with significance level set at P < 0.05. RESULTS Fe and Zn concentration and RFeB% increased and PA concentration decreased significantly in dual-fortified lentils. Dual-fortified lentil samples had higher RFeB% compared with Fe-fortified (single) samples in all 3 LPTs, whereas RFeB% decreased in Zn-fortified (single) RF and YS samples by 43.4% and 36%, respectively. The RF, RS, and YS samples, fortified with 16 mg Fe and 8 mg Zn/100 g of lentils, provided 27 mg Fe and 14 mg Zn, 28 mg Fe and 13.4 mg Zn, and 29.9 mg Fe and 12.1 mg Zn, respectively. RFeB% of RF, RS, and YS lentil samples increased by 91-307%, 114-522%, and 122-520%, respectively. Again, PA concentrations of RF, RS, and YS lentils were reduced by 0.63-0.53, 0.83-0.71, and 0.96-0.79 mg/g, respectively. CONCLUSIONS Dual-fortified lentil consumption can cost-effectively provide a significant part of the daily bioavailable Fe and Zn requirements of people with these 2 globally important micronutrient deficiencies.
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Affiliation(s)
- Rajib Podder
- Department of Plant Sciences, University of Saskatchewan, Saskatoon, Canada
| | - Raymond P Glahn
- Robert W Holley Center for Agriculture and Health, Agricultural Research Service, USDA, Ithaca, NY, USA
| | - Albert Vandenberg
- Department of Plant Sciences, University of Saskatchewan, Saskatoon, Canada
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Du W, Ning L, Liu Y, Zhang S, Yang Y, Wang Q, Chao S, Yang H, Huang F, Cheng H, Yu D. Identification of loci and candidate gene GmSPX-RING1 responsible for phosphorus efficiency in soybean via genome-wide association analysis. BMC Genomics 2020; 21:725. [PMID: 33076835 PMCID: PMC7574279 DOI: 10.1186/s12864-020-07143-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 10/11/2020] [Indexed: 11/25/2022] Open
Abstract
BACKGROUND Phosphorus (P) is an essential element in maintaining high biomass and yield in crops. Soybean [Glycine max (L.) Merr.] requires a large amount of P during growth and development. Improvement of P efficiency and identification of P efficiency genes are important strategies for increasing soybean yield. RESULTS Genome-wide association analysis (GWAS) with NJAU 355 K SoySNP array was performed to identify single nucleotide polymorphisms (SNPs) significantly associated with three shoot P efficiency-related traits of a natural population of 211 cultivated soybeans and relative values of these traits under normal P (+P) condition and P deficiency (-P) condition. A total of 155 SNPs were identified significantly associated with P efficiency-related traits. SNPs that were significantly associated with shoot dry weight formed a SNP cluster on chromosome 11, while SNPs that were significantly associated with shoot P concentration formed a SNP cluster on chromosome 10. Thirteen haplotypes were identified based on 12 SNPs, and Hap9 was considered as the optimal haplotype. Four SNPs (AX-93636685, AX-93636692, AX-93932863, and AX-93932874) located on chromosome 10 were identified to be significantly associated with shoot P concentration under +P condition in two hydroponic experiments. Among these four SNPs, two of them (AX-93636685 and AX-93932874) were also significantly associated with the relative values of shoot P concentration under two P conditions. One SNP AX-93932874 was detected within 5'-untranslated region of Glyma.10 g018800, which contained SPX and RING domains and was named as GmSPX-RING1. Furthermore, the function research of GmSPX-RING1 was carried out in soybean hairy root transformation. Compared with their respective controls, P concentration in GmSPX-RING1 overexpressing transgenic hairy roots was significantly reduced by 32.75% under +P condition; In contrast, P concentration in RNA interference of GmSPX-RING1 transgenic hairy roots was increased by 38.90 and 14.51% under +P and -P conditions, respectively. CONCLUSIONS This study shows that the candidate gene GmSPX-RING1 affects soybean phosphorus efficiency by negatively regulating soybean phosphorus concentration in soybean hairy roots. The SNPs and candidate genes identified should be potential for improvement of P efficiency in future soybean breeding programs.
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Affiliation(s)
- Wenkai Du
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Lihua Ning
- Institute of Crop Germplasm and Biotechnology, Provincial Key Laboratory of Agrobiology, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014 China
| | - Yongshun Liu
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Shixi Zhang
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Yuming Yang
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Qing Wang
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Shengqian Chao
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Hui Yang
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
- School of Life Sciences, Guangzhou University, Guangzhou, 510006 China
| | - Fang Huang
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Hao Cheng
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Deyue Yu
- National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
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Zhang D, Ng EL, Hu W, Wang H, Galaviz P, Yang H, Sun W, Li C, Ma X, Fu B, Zhao P, Zhang F, Jin S, Zhou M, Du L, Peng C, Zhang X, Xu Z, Xi B, Liu X, Sun S, Cheng Z, Jiang L, Wang Y, Gong L, Kou C, Li Y, Ma Y, Huang D, Zhu J, Yao J, Lin C, Qin S, Zhou L, He B, Chen D, Li H, Zhai L, Lei Q, Wu S, Zhang Y, Pan J, Gu B, Liu H. Plastic pollution in croplands threatens long-term food security. Glob Chang Biol 2020; 26:3356-3367. [PMID: 32281177 DOI: 10.1111/gcb.15043] [Citation(s) in RCA: 100] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 01/02/2020] [Accepted: 02/01/2020] [Indexed: 06/11/2023]
Abstract
Plastic pollution is a global concern given its prevalence in aquatic and terrestrial ecosystems. Studies have been conducted on the distribution and impact of plastic pollution in marine ecosystems, but little is known on terrestrial ecosystems. Plastic mulch has been widely used to increase crop yields worldwide, yet the impact of plastic residues in cropland soils to soil health and crop production in the long term remained unclear. In this paper, using a global meta-analysis, we found that the use of plastic mulch can indeed increase crop yields on average by 25%-42% in the immediate season due to the increase of soil temperature (+8%) and moisture (+17%). However, the unabated accumulation of film residues in the field negatively impacts its physicochemical properties linked to healthy soil and threatens food production in the long term. It has multiple negative impacts on plant growth including crop yield (at the mean rate of -3% for every additional 100 kg/ha of film residue), plant height (-2%) and root weight (-5%), and soil properties including soil water evaporation capacity (-2%), soil water infiltration rate (-8%), soil organic matter (-0.8%) and soil available phosphorus (-5%) based on meta-regression. Using a nationwide field survey of China, the largest user of plastic mulch worldwide, we found that plastic residue accumulation in cropland soils has reached 550,800 tonnes, with an estimated 6%-10% reduction in cotton yield in some polluted sites based on current level of plastic residue content. Immediate actions should be taken to ensure the recovery of plastic film mulch and limit further increase in film residue loading to maintain the sustainability of these croplands.
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Affiliation(s)
- Dan Zhang
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Ee Ling Ng
- School of Agriculture and Food, The University of Melbourne, Melbourne, Vic., Australia
| | - Wanli Hu
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Yunnan, P.R. China
| | - Hongyuan Wang
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Pablo Galaviz
- Bioinformatics and Data Science Research Facility, Children's Medical Research Institute, Sydney, NSW, Australia
| | - Hude Yang
- Institute of Soil, Fertilizer and Water-Saving Agriculture, Gansu Academy of Agricultural Sciences, Lanzhou, P.R. China
| | - Wentao Sun
- Institute of Plant Nutrition and Environment Resources, Liaoning Academy of Agricultural Sciences, Shenyang, P.R. China
| | - Chongxiao Li
- Protection Station of Agricultural Resources and Environment, Gansu Agricultural Department, Lanzhou, P.R. China
| | - Xingwang Ma
- Institute of Soil Fertilizer and Water Saving, Xinjiang Academy of Agricultural Sciences, Urumqi, P.R. China
| | - Bin Fu
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Yunnan, P.R. China
| | - Peiyi Zhao
- Institute of Plant Nutrition and Analysis of Inner-Mongolia Academy of Agricultural Sciences, Hohhot, P.R. China
| | - Fulin Zhang
- Institute of Plant Protection, Soil and Fertilizer Sciences, Hubei Academy of Agricultural Sciences, Wuhan, P.R. China
| | - Shuqin Jin
- Research Center for Rural Economy, Ministry of Agriculture and Rural Affairs, Beijing, P.R. China
| | - Mingdong Zhou
- Protection Station of Agricultural Resources and Environment, Xinjiang Agricultural Department, Urumqi, P.R. China
| | - Lianfeng Du
- Institute of Plant Nutrition and Resources, Beijing Academy of Agriculture and Forestry Sciences, Beijing, P.R. China
| | - Chang Peng
- Institute of Agricultural Resource and Environment, Jilin Academy of Agricultural Sciences, Changchun, P.R. China
| | - Xuejun Zhang
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, P.R. China
| | - Zhiyu Xu
- Rural Energy and Environment Agency, Ministry of Agriculture and Rural Affairs, Beijing, P.R. China
| | - Bin Xi
- Rural Energy and Environment Agency, Ministry of Agriculture and Rural Affairs, Beijing, P.R. China
| | - Xiaoxia Liu
- Beijing Agro-Environment Monitoring Station, Beijing, P.R. China
| | - Shiyou Sun
- Institute of Agricultural Resources and Environment, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, P.R. China
| | - Zhenhua Cheng
- Tianjin Agro-Environment Monitoring Station, Tianjin, P.R. China
| | - Lihua Jiang
- Institute of Agricultural Resources and Environment, Shandong Academy of Agricultural Sciences, Jinan, P.R. China
| | - Yufeng Wang
- Institute of Soil Fertilizer and Environment Resources, Heilongjiang Academy of Agricultural Sciences, Harbin, P.R. China
| | - Liang Gong
- Institute of Plant Nutrition and Environment Resources, Liaoning Academy of Agricultural Sciences, Shenyang, P.R. China
| | - Changlin Kou
- Institute of Plant Nutrition, Agricultural Resources and Environment Science, Henan Academy of Agricultural Sciences, Zhengzhou, P.R. China
| | - Yan Li
- Institute of Environmental Resources and Soil Fertilizer, Zhejiang Academy of Agricultural Science, Hangzhou, P.R. China
| | - Youhua Ma
- School of Resource and Environment, Anhui Agricultural University, Hefei, P.R. China
| | - Dongfeng Huang
- Institute of Soil and Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou, P.R. China
| | - Jian Zhu
- Hunan Academy of Agricultural Sciences, Changsha, P.R. China
| | - Jianwu Yao
- Soil and Fertilizer Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, P.R. China
| | - Chaowen Lin
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, P.R. China
| | - Song Qin
- Guizhou Institute of Soil and Fertilizer, Guiyang, P.R. China
| | - Liuqiang Zhou
- Agricultural Resources and Environment Institute, Guangxi Academy of Agricultural Sciences, Nanning, P.R. China
| | - Binghui He
- College of Resources and Environment, Southwest University, Chongqing, P.R. China
| | - Deli Chen
- School of Agriculture and Food, The University of Melbourne, Melbourne, Vic., Australia
| | - Huanchun Li
- Institute of Plant Nutrition and Analysis of Inner-Mongolia Academy of Agricultural Sciences, Hohhot, P.R. China
| | - Limei Zhai
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Qiuliang Lei
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Shuxia Wu
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Yitao Zhang
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Junting Pan
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Baojing Gu
- Department of Land Management, Zhejiang University, Hangzhou, P.R. China
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, P.R. China
| | - Hongbin Liu
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
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Tian Y, Chen K, Li X, Zheng Y, Chen F. Design of high-oleic tobacco (Nicotiana tabacum L.) seed oil by CRISPR-Cas9-mediated knockout of NtFAD2-2. BMC Plant Biol 2020; 20:233. [PMID: 32450806 PMCID: PMC7249356 DOI: 10.1186/s12870-020-02441-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Accepted: 05/11/2020] [Indexed: 05/09/2023]
Abstract
BACKGROUND Tobacco seed oil could be used as an appropriate feedstock for biodiesel production. However, the high linoleic acid content of tobacco seed oil makes it susceptible to oxidation. Altering the fatty acid profile by increasing the content of oleic acid could improve the properties of biodiesel produced from tobacco seed oil. RESULTS Four FAD2 genes, NtFAD2-1a, NtFAD2-1b, NtFAD2-2a, and NtFAD2-2b, were identified in allotetraploid tobacco genome. Phylogenetic analysis of protein sequences showed that NtFAD2-1a and NtFAD2-2a originated from N. tomentosiformis, while NtFAD2-1b and NtFAD2-2b from N. sylvestris. Expression analysis revealed that NtFAD2-2a and NtFAD2-2b transcripts were more abundant in developing seeds than in other tissues, while NtFAD2-1a and NtFAD2-1b showed low transcript levels in developing seed. Phylogenic analysis showed that NtFAD2-2a and NtFAD2-2b were seed-type FAD2 genes. Heterologous expression in yeast cells demonstrated that both NtFAD2-2a and NtFAD2-2b protein could introduce a double bond at the Δ12 position of fatty acid chain. The fatty acid profile analysis of tobacco fad2-2 mutant seeds derived from CRISPR-Cas9 edited plants showed dramatic increase of oleic acid content from 11% to over 79%, whereas linoleic acid decreased from 72 to 7%. In addition, the fatty acid composition of leaf was not affected in fad2-2 mutant plants. CONCLUSION Our data showed that knockout of seed-type FAD2 genes in tobacco could significantly increase the oleic acid content in seed oil. This research suggests that CRISPR-Cas9 system offers a rapid and highly efficient method in the tobacco seed lipid engineering programs.
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Affiliation(s)
- Yinshuai Tian
- College of Landscape and Ecological Engineering, Hebei University of Engineering, No.19 Taiji Road, Economic and technological development area, Handan, 056038, Hebei, China
- Institute of New Energy and Low-carbon Technology, Sichuan University, Chuanda Road, Shuangliu district, Chengdu, 610207, Sichuan, China
| | - Kai Chen
- College of Landscape and Ecological Engineering, Hebei University of Engineering, No.19 Taiji Road, Economic and technological development area, Handan, 056038, Hebei, China
| | - Xiao Li
- Key Laboratory of Bio-resources and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, No.29 Wangjiang Road, Wuhou district, Chengdu, 610065, Sichuan, China
| | - Yunpu Zheng
- School of Water Conservancy and Hydroelectric Power, Hebei University of Engineering, No.19 Taiji Road, Economic and technological development area, Handan, 056038, Hebei, China
| | - Fang Chen
- Institute of New Energy and Low-carbon Technology, Sichuan University, Chuanda Road, Shuangliu district, Chengdu, 610207, Sichuan, China.
- Key Laboratory of Bio-resources and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, No.29 Wangjiang Road, Wuhou district, Chengdu, 610065, Sichuan, China.
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Jiao X, Wang H, Yan J, Kong X, Liu Y, Chu J, Chen X, Fang R, Yan Y. Promotion of BR Biosynthesis by miR444 Is Required for Ammonium-Triggered Inhibition of Root Growth. Plant Physiol 2020; 182:1454-1466. [PMID: 31871071 PMCID: PMC7054888 DOI: 10.1104/pp.19.00190] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 12/08/2019] [Indexed: 05/04/2023]
Abstract
Rice (Oryza sativa), the staple food for almost half of the world's population, prefers ammonium (NH4 +) as the major nitrogen resource, and while NH4 + has profound effects on rice growth and yields, the underlying regulatory mechanisms remain largely unknown. Brassinosteroids (BRs) are a class of steroidal hormones playing key roles in plant growth and development. In this study, we show that NH4 + promotes BR biosynthesis through miR444 to regulate rice root growth. miR444 targeted five homologous MADS-box transcription repressors potentially forming homologous or heterogeneous complexes in rice. miR444 positively regulated BR biosynthesis through its MADS-box targets, which directly repress the transcription of BR-deficient dwarf 1 (OsBRD1), a key BR biosynthetic gene. NH4 + induced the miR444-OsBRD1 signaling cascade in roots, thereby increasing the amount of BRs, whose biosynthesis and signaling were required for NH4 + -dependent root elongation inhibition. Consistently, miR444-overexpressing rice roots were hypersensitive to NH4 + depending on BR biosynthesis, and overexpression of miR444's target, OsMADS57, resulted in rice hyposensitivity to NH4 + in root elongation, which was associated with a reduction of BR content. In summary, our findings reveal a cross talk mechanism between NH4 + and BR in which NH4 + activates miR444-OsBRD1, an undescribed BR biosynthesis-promoting signaling cascade, to increase BR content, inhibiting root elongation in rice.
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Affiliation(s)
- Xiaoming Jiao
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Huacai Wang
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Jijun Yan
- Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
- National Plant Gene Research Center, Beijing 100101, China
| | - Xiaoyu Kong
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yawen Liu
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinfang Chu
- Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
- National Plant Gene Research Center, Beijing 100101, China
| | - Xiaoying Chen
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- National Plant Gene Research Center, Beijing 100101, China
- Innovation Academy for Seed Design, Chinese Academy of Sciences, Beijing 100101, China
| | - Rongxiang Fang
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- National Plant Gene Research Center, Beijing 100101, China
| | - Yongsheng Yan
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- Innovation Academy for Seed Design, Chinese Academy of Sciences, Beijing 100101, China
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