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Alfano AI, Lange H, Brindisi M. Amide Bonds Meet Flow Chemistry: A Journey into Methodologies and Sustainable Evolution. CHEMSUSCHEM 2022; 15:e202102708. [PMID: 35015338 PMCID: PMC9304223 DOI: 10.1002/cssc.202102708] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 01/11/2022] [Indexed: 06/03/2023]
Abstract
Formation of amide bonds is of immanent importance in organic and synthetic medicinal chemistry. Its presence in "traditional" small-molecule active pharmaceutical ingredients, in linear or cyclic oligo- and polypeptidic actives, including pseudopeptides, has led to the development of dedicated synthetic approaches for the formation of amide bonds starting from, if necessary, suitably protected amino acids. While the use of solid supported reagents is common in traditional peptide synthesis, similar approaches targeting amide bond formation in continuous-flow mode took off more significantly, after a first publication in 2006, only a couple of years ago. Most efforts rely upon the transition of traditional approaches in flow mode, or the combination of solid-phase peptide synthesis principles with flow chemistry, and advantages are mainly seen in improving space-time yields. This Review summarizes and compares the various approaches in terms of basic amide formation, peptide synthesis, and pseudopeptide generation, describing the technological approaches and the advantages that were generated by the specific flow approaches. A final discussion highlights potential future needs and perspectives in terms of greener and more sustainable syntheses.
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Affiliation(s)
- Antonella Ilenia Alfano
- SPOTS-Lab – Sustainable Pharmaceutical and Organic Technology and Synthesis LaboratoryUniversity of Naples ‘Federico II', Department of PharmacyVia Domenico Montesano 4980131NaplesItaly
| | - Heiko Lange
- University of Milano-Bicocca Department of Earth and Environmental SciencesPiazza della Scienza 120126MilanItaly
| | - Margherita Brindisi
- SPOTS-Lab – Sustainable Pharmaceutical and Organic Technology and Synthesis LaboratoryUniversity of Naples ‘Federico II', Department of PharmacyVia Domenico Montesano 4980131NaplesItaly
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2
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Alfano AI, Buommino E, Ferraro MG, Irace C, Zampella A, Lange H, Brindisi M. Coupling Interrupted Fischer and Multicomponent Joullié-Ugi to Chase Chemical Diversity: from Batch to Sustainable Flow Synthesis of Peptidomimetics. ChemMedChem 2021; 16:3795-3809. [PMID: 34585536 PMCID: PMC9297956 DOI: 10.1002/cmdc.202100474] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 09/28/2021] [Indexed: 12/28/2022]
Abstract
The generation of peptidomimetic substructures for medicinal chemistry purposes requires effective and divergent synthetic methods. We present in this work an efficient flow process that allows quick modulation of reagents for Joullié-Ugi multicomponent reaction, using spiroindolenines as core motifs. This sterically hindered imine equivalent could successfully be diversified using various isocyanides and amino acids in generally good space-time yields. A telescoped flow process combining interrupted Fischer reaction for spiroindolenine synthesis and subsequent Joullié-Ugi-type modification resulted in product formation in very good overall yield in less than 2 hours compared to 48 hours required in batch mode. The developed protocol can be seen as a general tool for rapid and facile generation of peptidomimetic compounds. We also showcase preliminary biological assessments for the prepared compounds.
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Affiliation(s)
- Antonella Ilenia Alfano
- SPOTS-Lab - Sustainable Pharmaceutical and Organic Technology and Synthesis Laboratory, Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy
| | - Elisabetta Buommino
- Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy
| | - Maria Grazia Ferraro
- Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy
| | - Carlo Irace
- Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy
| | - Angela Zampella
- Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy
| | - Heiko Lange
- SPOTS-Lab - Sustainable Pharmaceutical and Organic Technology and Synthesis Laboratory, Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy.,Current affiliation: Department of Environmental and Earth Science, University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Margherita Brindisi
- SPOTS-Lab - Sustainable Pharmaceutical and Organic Technology and Synthesis Laboratory, Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131, Naples, Italy
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3
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Yao T, Wang B, Ren B, Qin X, Li T. Palladium-catalyzed Ugi-type reaction of 2-iodoanilines with isocyanides and carboxylic acids affording N-acyl anthranilamides. Chem Commun (Camb) 2021; 57:4247-4250. [PMID: 33913976 DOI: 10.1039/d1cc01226f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The first palladium-catalyzed Ugi-type multicomponent reaction for the synthesis of N-acyl anthranilamides from isocyanides, 2-iodoanilines and carboxylic acids has been developed. This method provides expeditious and highly efficient access to structurally diverse N-acyl anthranilamides from readily available starting materials with good functional group compatibility. The utility of this method has been demonstrated by the late stage functionalization of two commercial drugs: Flurbiprofen and Loxoprofen.
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Affiliation(s)
- Tuanli Yao
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an, 710021, China.
| | - Bo Wang
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an, 710021, China.
| | - Beige Ren
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an, 710021, China.
| | - Xiangyang Qin
- Department of Chemistry, School of Pharmacy, Air Force Medical University, Xi'an, 710032, China.
| | - Tao Li
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences (CAAS), 518 Ziyue RD, Minhang District, Shanghai, 200241, China.
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Pharande SG, Rentería-Gómez MA, Gámez-Montaño R. Synthesis of Polyheterocyclic Dimers Containing Restricted and Constrained Peptidomimetics via IMCR-Based Domino/Double CuAAC Click Strategy. Molecules 2020; 25:E5246. [PMID: 33187075 PMCID: PMC7696539 DOI: 10.3390/molecules25225246] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 10/30/2020] [Accepted: 11/01/2020] [Indexed: 12/19/2022] Open
Abstract
A novel strategy via the triple process (multicomponent reactions (MCR)-domino)/tandem was developed for the synthesis of restricted and constrained bis-1,2,3-triazole-linked pyrrolo[3,4-b]pyridine peptidomimetics dimers in overall yields of 20-55%. This strategy allows the construction of six heterocycles in two stages of the reaction.
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Affiliation(s)
| | | | - Rocío Gámez-Montaño
- Departamento de Química, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, 36050 Guanajuato, Mexico; (S.G.P.); (M.A.R.-G.)
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5
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Li D, Shen X, Lei J. Metal-Free Iodine/TEMPO-Mediated Aerobic Oxidative Ugi-Type Multicomponent Reactions with Tertiary Amines. J Org Chem 2019; 85:2466-2475. [DOI: 10.1021/acs.joc.9b03168] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Dengke Li
- College of Chemistry and Environmental Science; Center for Yunnan-Guizhou Plateau Chemical Functional Materials and Pollution Control, Qujing Normal University, Qujing 655011, Yunnan, China
| | - Xianfu Shen
- College of Chemistry and Environmental Science; Center for Yunnan-Guizhou Plateau Chemical Functional Materials and Pollution Control, Qujing Normal University, Qujing 655011, Yunnan, China
| | - Jian Lei
- College of Chemical Engineering and Material, Quanzhou Normal University, Quanzhou 362000, Fujian, China
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Budragchaa T, Westermann B, Wessjohann LA. Multicomponent synthesis of α-acylamino and α-acyloxy amide derivatives of desmycosin and their activity against gram-negative bacteria. Bioorg Med Chem 2019; 27:3237-3247. [PMID: 31229422 DOI: 10.1016/j.bmc.2019.05.046] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Revised: 03/27/2019] [Accepted: 05/29/2019] [Indexed: 11/17/2022]
Abstract
Bacterial resistance to the existing drugs requires constant development of new antibiotics. Developing compounds active against gram-negative bacteria thereby is one of the more challenging tasks. Among the many approaches to develop successful antibacterials, medicinal chemistry driven evolution of existing successful antibiotics is considered to be the most effective one. Towards this end, the C-20 aldehyde moiety of desmycosin was modified into α-acylamino and α-acyloxy amide functionalities using isonitrile-based Ugi and Passerini reactions, aiming for enhanced antibacterial and physicochemical properties. The desired compounds were obtained in 45-93% yield under mild conditions. The antibacterial activity of the resulting conjugates was tested against gram-negative Aliivibrio fischeri. The antibiotic strength is mostly governed by the amine component introduced. Thus, methylamine derived desmycosin bis-amide 4 displayed an enhanced inhibition rate vs. desmycosin (99% vs. 83% at 1 µM). Derivatives with long acyclic or bulky amine and isocyanide Ugi components reduced potency, whereas carboxylic acid reagents with longer chain length afforded increased bioactivity. In Passerini 3-component products, the butyric ester amide 22 displayed a higher activity (90% at 1 µM) than the parent compound desmycosin (2).
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Affiliation(s)
- Tuvshinjargal Budragchaa
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Saale, Germany
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Saale, Germany; Institute of Organic Chemistry, Faculty of Natural Sciences II, Martin-Luther-University Halle-Wittenberg, Kurt-Mothes-Strasse 2, 06120 Halle, Germany
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Saale, Germany; Institute of Organic Chemistry, Faculty of Natural Sciences II, Martin-Luther-University Halle-Wittenberg, Kurt-Mothes-Strasse 2, 06120 Halle, Germany.
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7
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Reguera L, Attorresi CI, Ramírez JA, Rivera DG. Steroid diversification by multicomponent reactions. Beilstein J Org Chem 2019; 15:1236-1256. [PMID: 31293671 PMCID: PMC6604710 DOI: 10.3762/bjoc.15.121] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 05/14/2019] [Indexed: 12/19/2022] Open
Abstract
Reports on structural diversification of steroids by means of multicomponent reactions (MCRs) have significantly increased over the last decade. This review covers the most relevant strategies dealing with the use of steroidal substrates in MCRs, including the synthesis of steroidal heterocycles and macrocycles as well as the conjugation of steroids to amino acids, peptides and carbohydrates. We demonstrate that steroids are available with almost all types of MCR reactive functionalities, e.g., carbonyl, carboxylic acid, alkyne, amine, isocyanide, boronic acid, etc., and that steroids are suitable starting materials for relevant MCRs such as those based on imine and isocyanide. The focus is mainly posed on proving the amenability of MCRs for the diversity-oriented derivatization of naturally occurring steroids and the construction of complex steroid-based platforms for drug discovery, chemical biology and supramolecular chemistry applications.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Cecilia I Attorresi
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina.,CONICET - Universidad de Buenos Aires. Unidad de Microanálisis y Métodos Físicos Aplicados a Química Orgánica (UMYMFOR). Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina
| | - Javier A Ramírez
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina.,CONICET - Universidad de Buenos Aires. Unidad de Microanálisis y Métodos Físicos Aplicados a Química Orgánica (UMYMFOR). Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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Reguera L, Rivera DG. Multicomponent Reaction Toolbox for Peptide Macrocyclization and Stapling. Chem Rev 2019; 119:9836-9860. [PMID: 30990310 DOI: 10.1021/acs.chemrev.8b00744] [Citation(s) in RCA: 182] [Impact Index Per Article: 36.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In the past decade, multicomponent reactions have experienced a renaissance as powerful peptide macrocyclization tools enabling the rapid creation of skeletal complexity and diversity with low synthetic cost. This review provides both a historical and modern overview of the development of the peptide multicomponent macrocyclization as a strategy capable to compete with the classic peptide cyclization methods in terms of chemical efficiency and synthetic scope. We prove that the utilization of multicomponent reactions for cyclizing peptides by either their termini or side chains provides a key advantage over those more established methods; that is, the possibility to explore the cyclic peptide chemotype space not only at the amino acid sequence but also at the ring-forming moiety. Owing to its multicomponent nature, this type of peptide cyclization process is well-suited to generate diversity at both the endo- and exo-cyclic fragments formed during the ring-closing step, which stands as a distinctive and useful characteristic for the creation and screening of cyclic peptide libraries. Examples of the novel multicomponent peptide stapling approach and heterocycle ring-forming macrocyclizations are included, along with multicomponent methods incorporating macrocyclization handles and the one-pot syntheses of macromulticyclic peptide cages. Interesting applications of this strategy in the field of drug discovery and chemical biology are provided.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
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Vasco AV, Méndez Y, Porzel A, Balbach J, Wessjohann LA, Rivera DG. A Multicomponent Stapling Approach to Exocyclic Functionalized Helical Peptides: Adding Lipids, Sugars, PEGs, Labels, and Handles to the Lactam Bridge. Bioconjug Chem 2018; 30:253-259. [DOI: 10.1021/acs.bioconjchem.8b00906] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Aldrin V. Vasco
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Yanira Méndez
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Andrea Porzel
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Jochen Balbach
- Institute of Physics/Biophysics and Center for Structural and Dynamics of Proteins, Martin Luther University Halle-Wittenberg, D-06120, Halle (Saale), Germany
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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10
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Reguera L, Méndez Y, Humpierre AR, Valdés O, Rivera DG. Multicomponent Reactions in Ligation and Bioconjugation Chemistry. Acc Chem Res 2018; 51:1475-1486. [PMID: 29799718 DOI: 10.1021/acs.accounts.8b00126] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Multicomponent reactions (MCRs) encompass an exciting class of chemical transformations that have proven success in almost all fields of synthetic organic chemistry. These convergent procedures incorporate three or more reactants into a final product in one pot, thus combining high levels of complexity and diversity generation with low synthetic cost. Striking applications of these processes are found in heterocycle, peptidomimetic, and natural product syntheses. However, their potential in the preparation of large macro- and biomolecular constructs has been realized just recently. This Account describes the most relevant results of our group in the utilization of MCRs for ligation/conjugation of biomolecules along with significant contributions from other laboratories that validate the utility of this special class of bioconjugation process. Thus, MCRs have proven to be efficient in the ligation of lipids to peptides and oligosaccharides as well as the ligation of steroids, carbohydrates, and fluorescent and affinity tags to peptides and proteins. In the field of glycolipids, we highlight the power of isocyanide-based MCRs with the one-pot double lipidation of glycan fragments functionalized as either the carboxylic acid or amine. In peptide chemistry, the versatility of the multicomponent ligation strategy is demonstrated in both solution-phase lipidation protocols and solid-phase procedures enabling the simultaneous lipidation and biotinylation of peptides. In addition, we show that MCRs are powerful methods for synchronized lipidation/labeling and macrocyclization of peptides, thus accomplishing in one step what usually requires long sequences. In the realm of protein bioconjugation, MCRs have also proven to be effective in labeling, site-selective modification, immobilization, and glycoconjugation processes. For example, we illustrate a successful application of multicomponent polysaccharide-protein conjugation with the preparation of multivalent glycoconjugate vaccine candidates by the ligation of two antigenic capsular polysaccharides of a pathogenic bacterium to carrier proteins. By highlighting the ability to join several biomolecules in only one synthetic operation, we hope to encourage the biomolecular chemistry community to apply this powerful chemistry to novel biomedicinal challenges.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Yanira Méndez
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Ana R. Humpierre
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Oscar Valdés
- Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca 3460000, Chile
| | - Daniel G. Rivera
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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11
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Méndez Y, Chang J, Humpierre AR, Zanuy A, Garrido R, Vasco AV, Pedroso J, Santana D, Rodríguez LM, García-Rivera D, Valdés Y, Vérez-Bencomo V, Rivera DG. Multicomponent polysaccharide-protein bioconjugation in the development of antibacterial glycoconjugate vaccine candidates. Chem Sci 2018; 9:2581-2588. [PMID: 29719713 PMCID: PMC5897956 DOI: 10.1039/c7sc05467j] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2017] [Accepted: 01/19/2018] [Indexed: 12/21/2022] Open
Abstract
A new synthetic strategy for the development of multivalent antibacterial glycoconjugate vaccines is described. The approach comprises the utilization of an isocyanide-based multicomponent process for the conjugation of functionalized capsular polysaccharides of S. pneumoniae and S. Typhi to carrier proteins such as diphtheria and tetanus toxoids. For the first time, oxo- and carboxylic acid-functionalized polysaccharides could be either independently or simultaneously conjugated to immunogenic proteins by means of the Ugi-multicomponent reaction, thus leading to mono- or multivalent unimolecular glycoconjugates as vaccine candidates. Despite the high molecular weight of the two or three reacting biomolecules, the multicomponent bioconjugation proved highly efficient and reproducible. The Ugi-derived glycoconjugates showed notable antigenicity and elicited good titers of functional specific antibodies. To our knowledge, this is the only bioconjugation method that enables the incorporation of two different polysaccharidic antigens to a carrier protein in a single step. Applications in the field of self-adjuvanting, eventually anticancer, multicomponent vaccines are foreseeable.
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Affiliation(s)
- Yanira Méndez
- Center for Natural Products Research , Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba .
| | - Janoi Chang
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | - Ana R Humpierre
- Center for Natural Products Research , Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba .
| | - Abel Zanuy
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | - Raine Garrido
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | - Aldrin V Vasco
- Center for Natural Products Research , Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba .
- Department of Bioorganic Chemistry , Leibniz Institute of Plant Biochemistry , Weinberg 3 , 06120 , Halle/Saale , Germany
| | - Jessy Pedroso
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | - Darielys Santana
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | - Laura M Rodríguez
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | | | - Yury Valdés
- Finlay Institute of Vaccines , Ave 27 Nr. 19805 , Havana 10600 , Cuba .
| | | | - Daniel G Rivera
- Center for Natural Products Research , Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba .
- Department of Bioorganic Chemistry , Leibniz Institute of Plant Biochemistry , Weinberg 3 , 06120 , Halle/Saale , Germany
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12
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Guerrero I, San Segundo M, Correa A. Iron-catalyzed C(sp3)–H functionalization ofN,N-dimethylanilines with isocyanides. Chem Commun (Camb) 2018; 54:1627-1630. [DOI: 10.1039/c7cc09872c] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Iron salts as cost-efficient catalysts for the assembly of privileged α-amino amides and short peptides through Ugi-type reactions.
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Affiliation(s)
- Itziar Guerrero
- Department of Organic Chemistry I
- University of the Basque Country (UPV/EHU)
- Joxe Mari Korta R&D Center
- Spain
| | - Marcos San Segundo
- Department of Organic Chemistry I
- University of the Basque Country (UPV/EHU)
- Joxe Mari Korta R&D Center
- Spain
| | - Arkaitz Correa
- Department of Organic Chemistry I
- University of the Basque Country (UPV/EHU)
- Joxe Mari Korta R&D Center
- Spain
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13
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San Segundo M, Guerrero I, Correa A. Co-Catalyzed C(sp3)–H Oxidative Coupling of Glycine and Peptide Derivatives. Org Lett 2017; 19:5288-5291. [DOI: 10.1021/acs.orglett.7b02567] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Marcos San Segundo
- Department of Organic Chemistry-I, University of the Basque Country (UPV-EHU), Joxe Mari Korta R&D Center, Av. Tolosa 72, 20018 Donostia-San Sebastián, Spain
| | - Itziar Guerrero
- Department of Organic Chemistry-I, University of the Basque Country (UPV-EHU), Joxe Mari Korta R&D Center, Av. Tolosa 72, 20018 Donostia-San Sebastián, Spain
| | - Arkaitz Correa
- Department of Organic Chemistry-I, University of the Basque Country (UPV-EHU), Joxe Mari Korta R&D Center, Av. Tolosa 72, 20018 Donostia-San Sebastián, Spain
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14
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Echemendía R, Fernández O, Coro J, Suárez M, Rivera DG. A versatile approach to hybrid thiadiazine-based molecules by the Ugi four-component reaction. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.03.075] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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15
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Thomas J, Jana S, Sonawane M, Fiey B, Balzarini J, Liekens S, Dehaen W. A new four-component reaction involving the Michael addition and the Gewald reaction, leading to diverse biologically active 2-aminothiophenes. Org Biomol Chem 2017; 15:3892-3900. [DOI: 10.1039/c7ob00707h] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A Gewald-four component reaction has been successfully developed for the synthesis of a series of compounds containing an indole and a 2-aminothiophene moiety separated by a methylene spacer having anti-proliferative activity.
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Affiliation(s)
- Joice Thomas
- Molecular Design and Synthesis
- Department of Chemistry
- KU Leuven
- 3001 Leuven
- Belgium
| | - Sampad Jana
- Molecular Design and Synthesis
- Department of Chemistry
- KU Leuven
- 3001 Leuven
- Belgium
| | - Mahendra Sonawane
- Molecular Design and Synthesis
- Department of Chemistry
- KU Leuven
- 3001 Leuven
- Belgium
| | - Bert Fiey
- Molecular Design and Synthesis
- Department of Chemistry
- KU Leuven
- 3001 Leuven
- Belgium
| | - Jan Balzarini
- Department of Microbiology and Immunology
- Rega Institute for Medical Research
- Herestraat 49
- KU Leuven
- B-3000 Leuven
| | - Sandra Liekens
- Department of Microbiology and Immunology
- Rega Institute for Medical Research
- Herestraat 49
- KU Leuven
- B-3000 Leuven
| | - Wim Dehaen
- Molecular Design and Synthesis
- Department of Chemistry
- KU Leuven
- 3001 Leuven
- Belgium
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16
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Morejón MC, Laub A, Westermann B, Rivera DG, Wessjohann LA. Solution- and Solid-Phase Macrocyclization of Peptides by the Ugi-Smiles Multicomponent Reaction: Synthesis of N-Aryl-Bridged Cyclic Lipopeptides. Org Lett 2016; 18:4096-9. [PMID: 27505031 DOI: 10.1021/acs.orglett.6b02001] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A new multicomponent methodology for the solution- and solid-phase macrocyclization of peptides is described. The approach comprises the utilization of the Ugi-Smiles reaction for the cyclization of 3-nitrotyrosine-containing peptides either by the N-terminus or the lysine side-chain amino groups. Both the on-resin and solution cyclizations took place with good to excellent efficiency in the presence of an aldehyde and a lipidic isocyanide, while the use of paraformaldehyde required an aminocatalysis-mediated imine formation prior to the on-resin Ugi-Smiles ring closure. The introduction of a turn motif in the peptide sequence facilitated the cyclization step, shortened the reaction time, and delivered crude products with >90% purity. This powerful method provided a variety of structurally novel N-aryl-bridged cyclic lipopeptides occurring as single atropisomers.
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Affiliation(s)
- Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Annegret Laub
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
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17
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Golubev P, Bakulina O, Dar'in D, Krasavin M. Indoline-Based Constrained Peptidomimetic Motifs Obtained via the Joullié-Ugi Reaction of Indolenines. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600656] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Pavel Golubev
- Institute of Chemistry; Saint Petersburg State University; 26 Universitetskii Prospect 198504 Peterhof Russian Federation
| | - Olga Bakulina
- Institute of Chemistry; Saint Petersburg State University; 26 Universitetskii Prospect 198504 Peterhof Russian Federation
| | - Dmitry Dar'in
- Institute of Chemistry; Saint Petersburg State University; 26 Universitetskii Prospect 198504 Peterhof Russian Federation
| | - Mikhail Krasavin
- Institute of Chemistry; Saint Petersburg State University; 26 Universitetskii Prospect 198504 Peterhof Russian Federation
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18
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Wessjohann LA, Morejón MC, Ojeda GM, Rhoden CRB, Rivera DG. Applications of Convertible Isonitriles in the Ligation and Macrocyclization of Multicomponent Reaction-Derived Peptides and Depsipeptides. J Org Chem 2016; 81:6535-45. [PMID: 27390908 DOI: 10.1021/acs.joc.6b01150] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Peptide ligation and macrocyclization are among the most relevant approaches in the field of peptide chemistry. Whereas a variety of strategies relying on coupling reagents and native chemical ligation are available, there is a continuous need for efficient peptide ligation and cyclization methods. Herein we report on the utilization of convertible isonitriles as effective synthetic tools for the ligation and macrocyclization of peptides arising from isocyanide-based multicomponent reactions. The strategy relies on the use of convertible isonitriles-derived from Fukuyama amines-and peptide carboxylic acids in Ugi and Passerini reactions to afford N-alkylated peptides and depsipeptides, respectively, followed by conversion of the C-terminal amide onto either N-peptidoacyl indoles or pyrroles. Such activated peptides proved efficient in the ligation to peptidic, lipidic and fluorescently labeled amines and in macrocyclization protocols. As a result, a wide set of N-substituted peptides (with methyl, glycosyl and amino acids as N-substituents), cyclic N-methylated peptides and a depsipeptide were produced in good yields using conditions that involve either classical heating or microwave irradiation. This report improves the repertoire of peptide covalent modification methods by exploiting the synthetic potential of multicomponent reactions and convertible isonitriles.
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Affiliation(s)
- Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Gerardo M Ojeda
- Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400, La Habana, Cuba
| | - Cristiano R B Rhoden
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
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19
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de la Torre AF, Rivera DG, Concepción O, Echemendia R, Correa AG, Paixão MW. Multicomponent Synthesis of Cyclic Depsipeptide Mimics by Ugi Reaction Including Cyclic Hemiacetals Derived from Asymmetric Organocatalysis. J Org Chem 2016; 81:803-9. [PMID: 26720907 DOI: 10.1021/acs.joc.5b02158] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The synthesis of novel cyclic depsipeptide mimics by means of an organocatalytic conjugate addition, leading to chiral cyclic hemiacetals, followed by a multicomponent reaction with α-amino acids and isocyanides, is described. The initial organocatalytic step is employed for the asymmetric derivatization of α,β-unsaturated aldehydes to 4,5-disubstituted 2-hydroxytetrahydropyrans, which are next used as chiral bifunctional substrates on the Ugi five-center three-component reaction, giving rise to nine-membered-ring lactones. This sequential approach proved to be suitable for the rapid generation of molecular complexity through the combination of aliphatic, dipeptidic, glucosidic, and lipidic isocyanides with several amino acids, thus giving access to amido-, glyco-, and lipo-depsipeptide scaffolds featuring natural product-like structures.
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Affiliation(s)
- Alexander F de la Torre
- Departamento de Química, Universidade Federal de São Carlos , São Carlos, SP, 13565-905, Brazil
| | - Daniel G Rivera
- Departamento de Química, Universidade Federal de São Carlos , São Carlos, SP, 13565-905, Brazil.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400, La Habana, Cuba
| | - Odette Concepción
- Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400, La Habana, Cuba
| | - Radell Echemendia
- Departamento de Química, Universidade Federal de São Carlos , São Carlos, SP, 13565-905, Brazil.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400, La Habana, Cuba
| | - Arlene G Correa
- Departamento de Química, Universidade Federal de São Carlos , São Carlos, SP, 13565-905, Brazil
| | - Márcio W Paixão
- Departamento de Química, Universidade Federal de São Carlos , São Carlos, SP, 13565-905, Brazil
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20
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Vasco AV, Pérez CS, Morales FE, Garay HE, Vasilev D, Gavín JA, Wessjohann LA, Rivera DG. Macrocyclization of Peptide Side Chains by the Ugi Reaction: Achieving Peptide Folding and Exocyclic N-Functionalization in One Shot. J Org Chem 2015; 80:6697-707. [DOI: 10.1021/acs.joc.5b00858] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Aldrin V. Vasco
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
- Facultad
de Ingeniería Química, Instituto Superior Politécnico José Antonio Echeverría, CUJAE, Calle 114 # 11901, 11500, La Habana, Cuba
| | - Carlos S. Pérez
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Fidel E. Morales
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Hilda E. Garay
- Synthetic Peptides
Group, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, La Habana, Cuba
| | - Dimitar Vasilev
- Department
of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle/Saale, Germany
| | - José A. Gavín
- Instituto
Universitario de Bioorgánica Antonio González and Departamento
de Química Orgánica, Universidad de La Laguna, 38206 La Laguna, Tenerife, Spain
| | - Ludger A. Wessjohann
- Department
of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle/Saale, Germany
| | - Daniel G. Rivera
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
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21
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Echemendía R, de La Torre AF, Monteiro JL, Pila M, Corrêa AG, Westermann B, Rivera DG, Paixão MW. Highly Stereoselective Synthesis of Natural-Product-Like Hybrids by an Organocatalytic/Multicomponent Reaction Sequence. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201412074] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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22
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Echemendía R, de La Torre AF, Monteiro JL, Pila M, Corrêa AG, Westermann B, Rivera DG, Paixão MW. Highly stereoselective synthesis of natural-product-like hybrids by an organocatalytic/multicomponent reaction sequence. Angew Chem Int Ed Engl 2015; 54:7621-5. [PMID: 25967546 DOI: 10.1002/anie.201412074] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Revised: 03/19/2015] [Indexed: 01/29/2023]
Abstract
In an endeavor to provide an efficient route to natural product hybrids, described herein is an efficient, highly stereoselective, one-pot process comprising an organocatalytic conjugate addition of 1,3-dicarbonyls to α,β-unsaturated aldehydes followed by an intramolecular isocyanide-based multicomponent reaction. This approach enables the rapid assembly of complex natural product hybrids including up to four different molecular fragments, such as hydroquinolinone, chromene, piperidine, peptide, lipid, and glycoside moieties. The strategy combines the stereocontrol of organocatalysis with the diversity-generating character of multicomponent reactions, thus leading to structurally unique peptidomimetics integrating heterocyclic, lipidic, and sugar moieties.
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Affiliation(s)
- Radell Echemendía
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana (Cuba)
| | - Alexander F de La Torre
- Departamento de Química, Universidade Federal de São Carlos, São Carlos, 97105-900, SP (Brasil)
| | - Julia L Monteiro
- Departamento de Química, Universidade Federal de São Carlos, São Carlos, 97105-900, SP (Brasil)
| | - Michel Pila
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana (Cuba)
| | - Arlene G Corrêa
- Departamento de Química, Universidade Federal de São Carlos, São Carlos, 97105-900, SP (Brasil)
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale) (Germany).,Martin-Luther-University, Halle Wittenberg, Institute of Chemistry, Kurt-Mothes-Str. 2, 06120 Halle (Germany)
| | - Daniel G Rivera
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana (Cuba).
| | - Márcio W Paixão
- Departamento de Química, Universidade Federal de São Carlos, São Carlos, 97105-900, SP (Brasil).
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23
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Facile synthesis of functionalized 1H-pyrrolo[2,3-b]quinolines via Ugi four-component reaction followed by Cu-catalyzed aryl-amide, C–N bond coupling. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2014.12.140] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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24
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Brauer MCN, Neves Filho RAW, Westermann B, Heinke R, Wessjohann LA. Synthesis of antibacterial 1,3-diyne-linked peptoids from an Ugi-4CR/Glaser coupling approach. Beilstein J Org Chem 2015; 11:25-30. [PMID: 25670988 PMCID: PMC4311588 DOI: 10.3762/bjoc.11.4] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Accepted: 12/23/2014] [Indexed: 12/20/2022] Open
Abstract
A library of ten 1,3-diyne-linked peptoids has been synthesized through an Ugi four-component reaction (U-4CR) followed by a copper-catalysed alkyne homocoupling (Glaser reaction). The short and chemoselective reaction sequence allows generating diverse (pseudo) dimeric peptoids. A combinatorial version allows the one-pot preparation of, e.g., six-compound-libraries of homo- and heterodimers verified by ESI-MS and HPLC. In a preliminary evaluation, some compounds display moderate activity against the Gram-positive bacterium Bacillus subtilis.
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Affiliation(s)
- Martin C N Brauer
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
| | - Ricardo A W Neves Filho
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
| | - Ramona Heinke
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
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25
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Densely functionalized 1,2-dihydrobenzo[b][1,6]naphthyridines: one-pot synthesis via sequential Ugi and Heck reactions. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.08.046] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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26
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Rivera DG, Vasco AV, Echemendía R, Concepción O, Pérez CS, Gavín JA, Wessjohann LA. A Multicomponent Conjugation Strategy to UniqueN-Steroidal Peptides: First Evidence of the Steroidal Nucleus as a β-Turn Inducer in Acyclic Peptides. Chemistry 2014; 20:13150-61. [DOI: 10.1002/chem.201403773] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Indexed: 01/14/2023]
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27
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Barreto ADFS, Vercillo OE, Wessjohann LA, Andrade CKZ. Consecutive isocyanide-based multicomponent reactions: synthesis of cyclic pentadepsipeptoids. Beilstein J Org Chem 2014; 10:1017-22. [PMID: 24991252 PMCID: PMC4077530 DOI: 10.3762/bjoc.10.101] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Accepted: 04/07/2014] [Indexed: 12/17/2022] Open
Abstract
The synthesis of six cyclic depsipeptoids inspired by the natural depsipeptide sansalvamide A is described. An efficient and fast synthetic strategy was developed using a combination of consecutive isocyanide-based multicomponent reactions (Ugi and Passerini reactions). This methodology can be used to access a variety of cyclic oligodepsipeptoids.
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Affiliation(s)
- Angélica de Fátima S Barreto
- Laboratório de Química Metodológica e Orgânica Sintética, Instituto de Química, Universidade de Brasília, CP 4478, 70910-970 Brasília-DF, Brazil
| | - Otilie E Vercillo
- Faculdade UnB Planaltina, Área Universitária Nº 1, Vila Nossa Senhora de Fátima, Planaltina, 73300-000, Brasília, DF, Brazil
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle (Saale), Germany
| | - Carlos Kleber Z Andrade
- Laboratório de Química Metodológica e Orgânica Sintética, Instituto de Química, Universidade de Brasília, CP 4478, 70910-970 Brasília-DF, Brazil
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28
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Koopmanschap G, Ruijter E, Orru RVA. Isocyanide-based multicomponent reactions towards cyclic constrained peptidomimetics. Beilstein J Org Chem 2014; 10:544-98. [PMID: 24605172 PMCID: PMC3943360 DOI: 10.3762/bjoc.10.50] [Citation(s) in RCA: 192] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Accepted: 01/24/2014] [Indexed: 12/16/2022] Open
Abstract
In the recent past, the design and synthesis of peptide mimics (peptidomimetics) has received much attention. This because they have shown in many cases enhanced pharmacological properties over their natural peptide analogues. In particular, the incorporation of cyclic constructs into peptides is of high interest as they reduce the flexibility of the peptide enhancing often affinity for a certain receptor. Moreover, these cyclic mimics force the molecule into a well-defined secondary structure. Constraint structural and conformational features are often found in biological active peptides. For the synthesis of cyclic constrained peptidomimetics usually a sequence of multiple reactions has been applied, which makes it difficult to easily introduce structural diversity necessary for fine tuning the biological activity. A promising approach to tackle this problem is the use of multicomponent reactions (MCRs), because they can introduce both structural diversity and molecular complexity in only one step. Among the MCRs, the isocyanide-based multicomponent reactions (IMCRs) are most relevant for the synthesis of peptidomimetics because they provide peptide-like products. However, these IMCRs usually give linear products and in order to obtain cyclic constrained peptidomimetics, the acyclic products have to be cyclized via additional cyclization strategies. This is possible via incorporation of bifunctional substrates into the initial IMCR. Examples of such bifunctional groups are N-protected amino acids, convertible isocyanides or MCR-components that bear an additional alkene, alkyne or azide moiety and can be cyclized via either a deprotection-cyclization strategy, a ring-closing metathesis, a 1,3-dipolar cycloaddition or even via a sequence of multiple multicomponent reactions. The sequential IMCR-cyclization reactions can afford small cyclic peptide mimics (ranging from four- to seven-membered rings), medium-sized cyclic constructs or peptidic macrocycles (>12 membered rings). This review describes the developments since 2002 of IMCRs-cyclization strategies towards a wide variety of small cyclic mimics, medium sized cyclic constructs and macrocyclic peptidomimetics.
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Affiliation(s)
- Gijs Koopmanschap
- Department of Chemistry & Pharmaceutical Sciences, Amsterdam Institute of Molecules, Medicines and Systems, VU University Amsterdam, de Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
| | - Eelco Ruijter
- Department of Chemistry & Pharmaceutical Sciences, Amsterdam Institute of Molecules, Medicines and Systems, VU University Amsterdam, de Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
| | - Romano VA Orru
- Department of Chemistry & Pharmaceutical Sciences, Amsterdam Institute of Molecules, Medicines and Systems, VU University Amsterdam, de Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
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29
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30
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de la Torre AF, Rivera DG, Ferreira MAB, Corrêa AG, Paixão MW. Multicomponent Combinatorial Development and Conformational Analysis of Prolyl Peptide–Peptoid Hybrid Catalysts: Application in the Direct Asymmetric Michael Addition. J Org Chem 2013; 78:10221-32. [DOI: 10.1021/jo401609z] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
| | - Daniel G. Rivera
- Departamento
de Química, Universidade Federal de São Carlos, São
Carlos, SP 13565-905, Brazil
- Center
for Natural Products Study, Faculty of Chemistry, University of Havana, Zapata y G, 10400 La Habana, Cuba
| | - Marco A. B. Ferreira
- Departamento
de Química, Universidade Federal de São Carlos, São
Carlos, SP 13565-905, Brazil
| | - Arlene G. Corrêa
- Departamento
de Química, Universidade Federal de São Carlos, São
Carlos, SP 13565-905, Brazil
| | - Márcio W. Paixão
- Departamento
de Química, Universidade Federal de São Carlos, São
Carlos, SP 13565-905, Brazil
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31
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Rivera DG, León F, Concepción O, Morales FE, Wessjohann LA. A multiple multicomponent approach to chimeric peptide-peptoid podands. Chemistry 2013; 19:6417-28. [PMID: 23512744 DOI: 10.1002/chem.201201591] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2012] [Revised: 01/31/2013] [Indexed: 11/08/2022]
Abstract
The success of multi-armed, peptide-based receptors in supramolecular chemistry traditionally is not only based on the sequence but equally on an appropriate positioning of various peptidic chains to create a multivalent array of binding elements. As a faster, more versatile and alternative access toward (pseudo)peptidic receptors, a new approach based on multiple Ugi four-component reactions (Ugi-4CR) is proposed as a means of simultaneously incorporating several binding and catalytic elements into organizing scaffolds. By employing α-amino acids either as the amino or acid components of the Ugi-4CRs, this multiple multicomponent process allows for the one-pot assembly of podands bearing chimeric peptide-peptoid chains as appended arms. Tripodal, bowl-shaped, and concave polyfunctional skeletons are employed as topologically varied platforms for positioning the multiple peptidic chains formed by Ugi-4CRs. In a similar approach, steroidal building blocks with several axially-oriented isocyano groups are synthesized and utilized to align the chimeric chains with conformational constrains, thus providing an alternative to the classical peptido-steroidal receptors. The branched and hybrid peptide-peptoid appendages allow new possibilities for both rational design and combinatorial production of synthetic receptors. The concept is also expandable to other multicomponent reactions.
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Affiliation(s)
- Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle/Saale, Germany
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32
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Herndon JW. The chemistry of the carbon–transition metal double and triple bond: Annual survey covering the year 2010. Coord Chem Rev 2012. [DOI: 10.1016/j.ccr.2012.02.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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33
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Welsch SJ, Kalinski C, Umkehrer M, Ross G, Kolb J, Burdack C, Wessjohann LA. Palladium and copper catalyzed cyclizations of hydrazine derived Ugi products: facile synthesis of substituted indazolones and hydroxytriazafluorendiones. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.02.095] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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34
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Schwäblein A, Martens J. First Synthesis of α,β-Unsaturated Lactones with High Diversity through the Passerini Reaction and Ring-Closing Metathesis (RCM). European J Org Chem 2011. [DOI: 10.1002/ejoc.201100160] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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35
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Barreto ADFS, Vercillo OE, Birkett MA, Caulfield JC, Wessjohann LA, Andrade CKZ. Fast and efficient microwave-assisted synthesis of functionalized peptoids via Ugi reactions. Org Biomol Chem 2011; 9:5024-7. [DOI: 10.1039/c1ob05471f] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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