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Vikhrankar SS, Satbhai S, Kulkarni P, Ranbhor R, Ramakrishnan V, Kodgire P. Enzymatic Routes for Chiral Amine Synthesis: Protein Engineering and Process Optimization. Biologics 2024; 18:165-179. [PMID: 38948006 PMCID: PMC11214570 DOI: 10.2147/btt.s446712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 06/14/2024] [Indexed: 07/02/2024]
Abstract
Chiral amines are essential motifs in pharmaceuticals, agrochemicals, and specialty chemicals. While traditional chemical routes to chiral amines often lack stereoselectivity and require harsh conditions, biocatalytic methods using engineered enzymes can offer high efficiency and selectivity under sustainable conditions. This review discusses recent advances in protein engineering of transaminases, oxidases, and other enzymes to improve catalytic performance. Strategies such as directed evolution, immobilization, and computational redesign have expanded substrate scope and enhanced efficiency. Furthermore, process optimization guided by techno-economic assessments has been crucial for establishing viable biomanufacturing routes. Combining state-of-the-art enzyme engineering with multifaceted process development will enable scalable, economical enzymatic synthesis of diverse chiral amine targets.
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Affiliation(s)
| | | | | | | | - Vibin Ramakrishnan
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, Assam, India
| | - Prashant Kodgire
- Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Indore, MP, India
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Pota G, Gallucci N, Cavasso D, Krauss IR, Vitiello G, López-Gallego F, Costantini A, Paduano L, Califano V. Controlling the Adsorption of β-Glucosidase onto Wrinkled SiO 2 Nanoparticles To Boost the Yield of Immobilization of an Efficient Biocatalyst. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:1482-1494. [PMID: 36651862 PMCID: PMC9893809 DOI: 10.1021/acs.langmuir.2c02861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 12/21/2022] [Indexed: 06/17/2023]
Abstract
β-Glucosidase (BG) catalyzes the hydrolysis of cellobiose to glucose, a substrate for fermentation to produce the carbon-neutral fuel bioethanol. Enzyme thermal stability and reusability can be improved through immobilization onto insoluble supports. Moreover, nanoscaled matrixes allow for preserving high reaction rates. In this work, BG was physically immobilized onto wrinkled SiO2 nanoparticles (WSNs). The adsorption procedure was tuned by varying the BG:WSNs weight ratio to achieve the maximum controllability and maximize the yield of immobilization, while different times of immobilization were monitored. Results show that a BG:WSNs ratio equal to 1:6 wt/wt provides for the highest colloidal stability, whereas an immobilization time of 24 h results in the highest enzyme loading (135 mg/g of support) corresponding to 80% yield of immobilization. An enzyme corona is formed in 2 h, which gradually disappears as the protein diffuses within the pores. The adsorption into the silica structure causes little change in the protein secondary structure. Furthermore, supported enzyme exhibits a remarkable gain in thermal stability, retaining complete folding up to 90 °C. Catalytic tests assessed that immobilized BG achieves 100% cellobiose conversion. The improved adsorption protocol provides simultaneously high glucose production, enhanced yield of immobilization, and good reusability, resulting in considerable reduction of enzyme waste in the immobilization stage.
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Affiliation(s)
- Giulio Pota
- University
of Naples Federico II, Department of Chemical,
Materials and Production Engineering, 80125Naples, Italy
| | - Noemi Gallucci
- University
of Naples Federico II, Department of Chemical
Sciences, 80125Naples, Italy
- CSGI, Center for Colloid and Surface Science, 50019Sesto Fiorentino(FI), Italy
| | - Domenico Cavasso
- University
of Naples Federico II, Department of Chemical
Sciences, 80125Naples, Italy
| | - Irene Russo Krauss
- University
of Naples Federico II, Department of Chemical
Sciences, 80125Naples, Italy
- CSGI, Center for Colloid and Surface Science, 50019Sesto Fiorentino(FI), Italy
| | - Giuseppe Vitiello
- University
of Naples Federico II, Department of Chemical,
Materials and Production Engineering, 80125Naples, Italy
- CSGI, Center for Colloid and Surface Science, 50019Sesto Fiorentino(FI), Italy
| | - Fernando López-Gallego
- Center
for Cooperative Research in Biomaterials (CIC BiomaGUNE), Basque Research and Technology Alliance (BRTA), 20850Donostia-San
Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 948009Bilbao, Spain
| | - Aniello Costantini
- University
of Naples Federico II, Department of Chemical,
Materials and Production Engineering, 80125Naples, Italy
| | - Luigi Paduano
- University
of Naples Federico II, Department of Chemical
Sciences, 80125Naples, Italy
- CSGI, Center for Colloid and Surface Science, 50019Sesto Fiorentino(FI), Italy
| | - Valeria Califano
- Institute
of Sciences and Technologies for Sustainable Energy and Mobility (STEMS), National Research Council of Italy (CNR), Viale Marconi 4, 80125Naples, Italy
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Bolivar JM, Woodley JM, Fernandez-Lafuente R. Is enzyme immobilization a mature discipline? Some critical considerations to capitalize on the benefits of immobilization. Chem Soc Rev 2022; 51:6251-6290. [PMID: 35838107 DOI: 10.1039/d2cs00083k] [Citation(s) in RCA: 113] [Impact Index Per Article: 56.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Enzyme immobilization has been developing since the 1960s and although many industrial biocatalytic processes use the technology to improve enzyme performance, still today we are far from full exploitation of the field. One clear reason is that many evaluate immobilization based on only a few experiments that are not always well-designed. In contrast to many other reviews on the subject, here we highlight the pitfalls of using incorrectly designed immobilization protocols and explain why in many cases sub-optimal results are obtained. We also describe solutions to overcome these challenges and come to the conclusion that recent developments in material science, bioprocess engineering and protein science continue to open new opportunities for the future. In this way, enzyme immobilization, far from being a mature discipline, remains as a subject of high interest and where intense research is still necessary to take full advantage of the possibilities.
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Affiliation(s)
- Juan M Bolivar
- FQPIMA group, Chemical and Materials Engineering Department, Faculty of Chemical Sciences, Complutense University of Madrid, Madrid, 28040, Spain
| | - John M Woodley
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, 2800 Kgs Lyngby, Denmark.
| | - Roberto Fernandez-Lafuente
- Departamento de Biocatálisis. ICP-CSIC, C/Marie Curie 2, Campus UAM-CSIC Cantoblanco, Madrid 28049, Spain. .,Center of Excellence in Bionanoscience Research, External Scientific Advisory Academic, King Abdulaziz University, Jeddah 21589, Saudi Arabia
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El-Kady K, Raslan M, Zaki AH. Effect of Different TiO 2 Morphologies on the Activity of Immobilized Lipase for Biodiesel Production. ACS OMEGA 2021; 6:35484-35493. [PMID: 34984280 PMCID: PMC8717535 DOI: 10.1021/acsomega.1c04942] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 11/29/2021] [Indexed: 06/14/2023]
Abstract
Lipase catalytic activity is greatly influenced by immobilization on nanoparticles. In this study, lipase from Aspergillus niger was immobilized on TiO2 nanoparticles with different morphologies: microspheres, nanotubes, and nanosheets. All TiO2 samples were prepared by a hydrothermal method. Lipase/TiO2 nanocomposites were prepared by a physical adsorption method through hydrophobic interactions. The prepared composites were characterized by Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), scanning electron microscopy (SEM), and high-resolution transmission electron microscopy (HRTEM). The catalytic activity of free and immobilized lipases was tested using sunflower oil in the presence of methanol to produce biodiesel at 40 °C for 90 min. The lipase immobilized on TiO2 microspheres showed the highest activity compared to the lipase immobilized on TiO2 nanotubes and nanosheets. To optimize the lipase-to-microsphere ratio, lipase was immobilized on TiO2 microspheres in different microspheres/lipase, w/w, (S/L) ratios of 1:1, 1:0.75, 1:0.5, and 1:0.25. It was noticed that the hydrolytic activity follows the order 1:0.25 > 1:0.5 > 1:75 > 1:1. The immobilization yield activities were found to be 113, 123, 125, and 130% for the microspheres/lipase (S/L) ratios of 1:1, 1:0.75, 1:0.5, and 1:0.25, respectively.
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Affiliation(s)
- Kholoud El-Kady
- Biotechnology
& Life Sciences Department, Faculty of Postgraduate Studies for
Advanced Sciences, Beni-Suef University, Beni-Suef 62521, Egypt
| | - Mai Raslan
- Biotechnology
& Life Sciences Department, Faculty of Postgraduate Studies for
Advanced Sciences, Beni-Suef University, Beni-Suef 62521, Egypt
| | - Ayman H. Zaki
- Materials
Science and Nanotechnology Department, Faculty of Postgraduate Studies
for Advanced Sciences, Beni-Suef University, Beni-Suef 62521, Egypt
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Khan S, Babadaei MMN, Hasan A, Edis Z, Attar F, Siddique R, Bai Q, Sharifi M, Falahati M. Enzyme-polymeric/inorganic metal oxide/hybrid nanoparticle bio-conjugates in the development of therapeutic and biosensing platforms. J Adv Res 2021; 33:227-239. [PMID: 34603792 PMCID: PMC8463903 DOI: 10.1016/j.jare.2021.01.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 01/02/2021] [Accepted: 01/22/2021] [Indexed: 12/23/2022] Open
Abstract
Background Because enzymes can control several metabolic pathways and regulate the production of free radicals, their simultaneous use with nanoplatforms showing protective and combinational properties is of great interest in the development of therapeutic nano-based platforms. However, enzyme immobilization on nanomaterials is not straightforward due to the toxic and unpredictable properties of nanoparticles in medical practice. Aim of review In fact, because of the ability to load enzymes on nano-based supports and increase their renewability, scientific groups have been tempted to create potential therapeutic enzymes in this field. Therefore, this study not only pays attention to the therapeutic and diagnostic applications of diseases by enzyme-nanoparticle (NP) bio-conjugate (abbreviated as: ENB), but also considers the importance of nanoplatforms used based on their toxicity, ease of application and lack of significant adverse effects on loaded enzymes. In the following, based on the published reports, we explained that the immobilization of enzymes on polymers, inorganic metal oxide and hybrid compounds provide hopes for potential use of ENBs in medical activities. Then, the use of ENBs in bioassay activities such as paper-based or wearing biosensors and lab-on-chip/microfluidic biosensors were evaluated. Finally, this review addresses the current challenges and future perspective of ENBs in biomedical applications. Key scientific concepts of review This literature may provide useful information regarding the application of ENBs in biosensing and therapeutic platforms.
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Affiliation(s)
- Suliman Khan
- Department of Cerebrovascular Diseases, The Second Affiliated Hospital of Zhengzhou University, Zhengzhou, China
| | - Mohammad Mahdi Nejadi Babadaei
- Department of Molecular Genetics, Faculty of Biological Science, North Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Anwarul Hasan
- Department of Mechanical and Industrial Engineering, College of Engineering, Qatar University, Doha 2713, Qatar
- Biomedical Research Centre, Qatar University, Doha 2713, Qatar
| | - Zehra Edis
- Department of Pharmaceutical Sciences, College of Pharmacy and Health Sciences, Ajman University, Ajman, United Arab Emirates
- Center of Medical and Bio-allied Health Sciences Research, Ajman University, PO Box 346, Ajman, United Arab Emirates
| | - Farnoosh Attar
- Department of Food Toxicology, Research Center of Food Technology and Agricultural Products, Standard Research Institute (SRI), Karaj, Iran
| | - Rabeea Siddique
- Department of Cerebrovascular Diseases, The Second Affiliated Hospital of Zhengzhou University, Zhengzhou, China
| | - Qian Bai
- Department of Anesthesiology, The Second Affiliated Hospital of Zhengzhou University, Zhengzhou, PR China
| | - Majid Sharifi
- Department of Tissue Engineering, School of Medicine, Shahroud University of Medical Sciences, Shahroud, Iran
- Department of Nanotechnology, Faculty of Advanced Sciences and Technology, Tehran Medical Sciences, Islamic Azad University, Tehran, Iran
- Department of Animal Science, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Mojtaba Falahati
- Department of Nanotechnology, Faculty of Advanced Sciences and Technology, Tehran Medical Sciences, Islamic Azad University, Tehran, Iran
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Valikhani D, Bolivar JM, Pelletier JN. An Overview of Cytochrome P450 Immobilization Strategies for Drug Metabolism Studies, Biosensing, and Biocatalytic Applications: Challenges and Opportunities. ACS Catal 2021. [DOI: 10.1021/acscatal.1c02017] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Donya Valikhani
- Department of Chemistry, Université de Montréal and Center for Green Chemistry and Catalysis (CGCC), 1375 Thérèse-Lavoie-Roux Ave., Montréal, Quebec H2 V 0B3, Canada
- PROTEO, The Québec Network for Research on Protein Function, Engineering and Applications, Québec City Quebec G1 V 0A6, Canada
| | - Juan M. Bolivar
- Chemical and Materials Engineering Department, Faculty of Chemical Sciences, Complutense University of Madrid, Complutense Ave., 28040 Madrid, Spain
| | - Joelle N. Pelletier
- Department of Chemistry, Université de Montréal and Center for Green Chemistry and Catalysis (CGCC), 1375 Thérèse-Lavoie-Roux Ave., Montréal, Quebec H2 V 0B3, Canada
- PROTEO, The Québec Network for Research on Protein Function, Engineering and Applications, Québec City Quebec G1 V 0A6, Canada
- Department of Biochemistry, Université de Montréal, 2900 Édouard-Montpetit ave, Montréal, Quebec H3T 1J4, Canada
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Tavernini L, Romero O, Aburto C, López-Gallego F, Illanes A, Wilson L. Development of a Hybrid Bioinorganic Nanobiocatalyst: Remarkable Impact of the Immobilization Conditions on Activity and Stability of β-Galactosidase. Molecules 2021; 26:molecules26144152. [PMID: 34299429 PMCID: PMC8303607 DOI: 10.3390/molecules26144152] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/01/2021] [Accepted: 07/05/2021] [Indexed: 01/15/2023] Open
Abstract
Hybrid bioinorganic biocatalysts have received much attention due to their simple synthesis, high efficiency, and structural features that favor enzyme activity and stability. The present work introduces a biomineralization strategy for the formation of hybrid nanocrystals from β-galactosidase. The effects of the immobilization conditions were studied, identifying the important effect of metal ions and pH on the immobilization yield and the recovered activity. For a deeper understanding of the biomineralization process, an in silico study was carried out to identify the ion binding sites at the different conditions. The selected β-galactosidase nanocrystals showed high specific activity (35,000 IU/g biocatalyst) and remarkable thermal stability with a half-life 11 times higher than the soluble enzyme. The nanobiocatalyst was successfully tested for the synthesis of galacto-oligosaccharides, achieving an outstanding performance, showing no signs of diffusional limitations. Thus, a new, simple, biocompatible and inexpensive nanobiocatalyst was produced with high enzyme recovery (82%), exhibiting high specific activity and high stability, with promising industrial applications.
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Affiliation(s)
- Luigi Tavernini
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Avenida Brasil 2085, Valparaíso 2362803, Chile; (L.T.); (C.A.); (A.I.)
| | - Oscar Romero
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Avenida Brasil 2085, Valparaíso 2362803, Chile; (L.T.); (C.A.); (A.I.)
- Bioprocess Engineering and Applied Biocatalysis Group, Department of Chemical Biological and Environmental Engineering, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
- Correspondence: (O.R.); (L.W.)
| | - Carla Aburto
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Avenida Brasil 2085, Valparaíso 2362803, Chile; (L.T.); (C.A.); (A.I.)
| | - Fernando López-Gallego
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia-San Sebastián, Spain;
- Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain
| | - Andrés Illanes
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Avenida Brasil 2085, Valparaíso 2362803, Chile; (L.T.); (C.A.); (A.I.)
| | - Lorena Wilson
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Avenida Brasil 2085, Valparaíso 2362803, Chile; (L.T.); (C.A.); (A.I.)
- Correspondence: (O.R.); (L.W.)
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