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Porzio E, Faraone Mennella MR, Manco G. DING Proteins Extend to the Extremophilic World. Int J Mol Sci 2021; 22:2035. [PMID: 33670786 PMCID: PMC7922408 DOI: 10.3390/ijms22042035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Revised: 02/04/2021] [Accepted: 02/16/2021] [Indexed: 11/16/2022] Open
Abstract
The DING proteins are ubiquitous in the three domains of life, from mesophiles to thermo- and hyperthermophiles. They belong to a family of more than sixty members and have a characteristic N-terminus, DINGGG, which is considered a "signature" of these proteins. Structurally, they share a highly conserved phosphate binding site, and a three dimensional organization resembling the "Venus Flytrap", both reminding the ones of PstS proteins. They have unusually high sequence conservation, even between distantly related species. Nevertheless despite that the genomes of most of these species have been sequenced, the DING gene has not been reported for all the relative characterized DING proteins. Identity of known DING proteins has been confirmed immunologically and, in some cases, by N-terminal sequence analysis. Only a few of the DING proteins have been purified and biochemically characterized. DING proteins are heterogeneous for their wide range of biological activities and some show different activities not always correlated with each other. Most of them have been originally identified for different biological properties, or rather for binding to phosphate and also to other ligands. Their involvement in pathologies is described. This review is an update of the most recent findings on old and new DING proteins.
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Affiliation(s)
- Elena Porzio
- Institute of Biochemistry and Cell Biology, CNR, Via P. Castellino 111, 80131 Naples, Italy;
| | | | - Giuseppe Manco
- Institute of Biochemistry and Cell Biology, CNR, Via P. Castellino 111, 80131 Naples, Italy;
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De Maio A, Porzio E, Rotondo S, Bianchi AR, Faraone-Mennella MR. In Sulfolobus solfataricus, the Poly(ADP-Ribose) Polymerase-Like Thermoprotein Is a Multifunctional Enzyme. Microorganisms 2020; 8:microorganisms8101523. [PMID: 33023025 PMCID: PMC7599888 DOI: 10.3390/microorganisms8101523] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 09/17/2020] [Accepted: 10/01/2020] [Indexed: 11/16/2022] Open
Abstract
In Sulfolobus solfataricus, Sso, the ADP-ribosylating thermozyme is known to carry both auto- and heteromodification of target proteins via short chains of ADP-ribose. Here, we provide evidence that this thermoprotein is a multifunctional enzyme, also showing ATPase activity. Electrophoretic and kinetic analyses were performed using NAD+ and ATP as substrates. The results showed that ATP is acting as a negative effector on the NAD+-dependent reaction, and is also responsible for inducing the dimerization of the thermozyme. These findings enabled us to further investigate the kinetic of ADP-ribosylation activity in the presence of ATP, and to also assay its ability to work as a substrate. Moreover, since the heteroacceptor of ADP-ribose is the sulfolobal Sso7 protein, known as an ATPase, some reconstitution experiments were set up to study the reciprocal influence of the ADP-ribosylating thermozyme and the Sso7 protein on their activities, considering also the possibility of direct enzyme/Sso7 protein interactions. This study provides new insights into the ATP-ase activity of the ADP-ribosylating thermozyme, which is able to establish stable complexes with Sso7 protein.
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Affiliation(s)
- Anna De Maio
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples “Federico II”, 80126 Naples, Italy; (S.R.); (A.R.B.)
- National Institute of Biostructures and Biosystems (INBB), via delle Medaglie d’oro, 00136 Rome, Italy
- Correspondence: (A.D.M.); (M.R.F.-M.); Tel.: +39-081-679134 (A.D.M.); +39-081-679136 (M.R.F.-M.)
| | - Elena Porzio
- Institute of Biochemistry and Cell Biology, CNR, via P.Castellino 111, 80131 Naples, Italy;
| | - Sergio Rotondo
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples “Federico II”, 80126 Naples, Italy; (S.R.); (A.R.B.)
| | - Anna Rita Bianchi
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples “Federico II”, 80126 Naples, Italy; (S.R.); (A.R.B.)
| | - Maria Rosaria Faraone-Mennella
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples “Federico II”, 80126 Naples, Italy; (S.R.); (A.R.B.)
- National Institute of Biostructures and Biosystems (INBB), via delle Medaglie d’oro, 00136 Rome, Italy
- Correspondence: (A.D.M.); (M.R.F.-M.); Tel.: +39-081-679134 (A.D.M.); +39-081-679136 (M.R.F.-M.)
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Porzio E, De Maio A, Ricciardi T, Mistretta C, Manco G, Faraone-Mennella MR. Comparison of the DING protein from the archaeon Sulfolobus solfataricus with human phosphate-binding protein and Pseudomonas fluorescence DING counterparts. Extremophiles 2018; 22:177-188. [PMID: 29327280 DOI: 10.1007/s00792-017-0985-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Accepted: 12/08/2017] [Indexed: 10/18/2022]
Abstract
DING proteins represent a new group of 40 kDa-related members, ubiquitous in living organisms. The family also include the DING protein from Sulfolobus solfataricus, functionally related to poly(ADP-ribose) polymerases. Here, the archaeal protein has been compared with the human Phosphate-Binding Protein and the Pseudomonas fluorescence DING enzyme, by enzyme assays and immune cross-reactivity. Surprisingly, as the Sulfolobus enzyme, the Human and Pseudomonas proteins display poly(ADP-ribose) polymerase activity, whereas a phosphatase activity was only present in Sulfolobus and human protein, despite the conserved phosphate-binding site residues in Pseudomonas DING. All proteins were positive to anti-DING antibodies and gave a comparable pattern of anti-poly(ADP-ribose) polymerase immunoreactivity with two bands, at around 40 kDa and roughly at the double of this molecular mass. The latter signal was present in all Sulfolobus enzyme preparations and proved not due to either a contaminant or a precursor protein, but likely being a dimeric form of the 40 kDa polypeptide. The common immunological and partly enzymatic behavior linking human, Pseudomonas and Sulfolobus DING proteins, makes the archaeal protein an important model system to investigate DING protein function and evolution within the cell.
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Affiliation(s)
- Elena Porzio
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples "Federico II", 80126, Naples, Italy. .,Institute of Protein Biochemistry, National Research Council (CNR), 80131, Naples, Italy.
| | - Anna De Maio
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples "Federico II", 80126, Naples, Italy.,National Institute of Biostructures and Biosystems (INBB), via delle medaglie d'oro, 00136, Rome, Italy
| | - Teresa Ricciardi
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples "Federico II", 80126, Naples, Italy
| | - Carmela Mistretta
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples "Federico II", 80126, Naples, Italy.,Institute for Agricultural and Forest Systems in the Mediterranean, CNR, Ercolano, Italy
| | - Giuseppe Manco
- Institute of Protein Biochemistry, National Research Council (CNR), 80131, Naples, Italy.
| | - Maria Rosaria Faraone-Mennella
- Department of Biology, Polytechnic School of Basic Sciences, University of Naples "Federico II", 80126, Naples, Italy.,National Institute of Biostructures and Biosystems (INBB), via delle medaglie d'oro, 00136, Rome, Italy
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Pinelli C, Sansone A, De Maio A, Morgillo A, Scandurra A, D'Aniello B. Proliferative events and apoptotic remodelling in retinal development of common toad (Bufo bufo). JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2015; 326:19-30. [PMID: 26541902 DOI: 10.1002/jez.b.22661] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Accepted: 10/22/2015] [Indexed: 12/22/2022]
Abstract
Proliferation and apoptosis are fundamental processes in the development of the retina, and a proper balance of the two phenomena is crucial to correct development of the organ. Despite intense investigation in different vertebrates, only a few studies have analyzed the cell death and the cell division quantitatively in the same species during development. Here we studied the time course of apoptosis and proliferation in the retina of common toad, Bufo bufo, and discuss the findings in an evolutionary perspective. We found cells that were dividing first scattered throughout the retina, then, in later stages, proliferation was confined to the ciliary marginal zone. This pattern was confirmed by the expression of the proliferative marker PCNA. Both proliferation and apoptosis occurred in successive waves, and two apoptotic peaks were detected: one at premetamorphosis 1 and the second at prometamorphosis. PARP-1, a known molecular marker of apoptosis, was used to confirm the data obtained by counting pyknotic nuclei. In summary, proliferative and apoptotic waves display an inverse time-relationship through development, with apoptotic peaks coinciding with low proliferation phases. In a comparative perspective, amphibians follow a developmental pattern similar to other vertebrates, although with different timing.
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Affiliation(s)
- Claudia Pinelli
- Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, Second University of Naples, Caserta, Italy
| | - Alfredo Sansone
- Department of Biology, University of Naples "Federico II", MSA Campus, Naples, Italy.,Institute of Neurophysiology and Cellular Biophysics, University of Göttingen, Göttingen, Germany
| | - Anna De Maio
- Department of Biology, University of Naples "Federico II", MSA Campus, Naples, Italy
| | - Antonietta Morgillo
- Department of Biology, University of Naples "Federico II", MSA Campus, Naples, Italy
| | - Anna Scandurra
- Department of Biology, University of Naples "Federico II", MSA Campus, Naples, Italy
| | - Biagio D'Aniello
- Department of Biology, University of Naples "Federico II", MSA Campus, Naples, Italy
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De Maio A, Natale E, Rotondo S, Di Cosmo A, Faraone-Mennella MR. Vault-poly-ADP-ribose polymerase in the Octopus vulgaris brain: a regulatory factor of actin polymerization dynamic. Comp Biochem Physiol B Biochem Mol Biol 2013; 166:40-7. [PMID: 23831359 DOI: 10.1016/j.cbpb.2013.06.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2013] [Revised: 06/11/2013] [Accepted: 06/24/2013] [Indexed: 01/14/2023]
Abstract
Our previous behavioural, biochemical and immunohistochemical analyses conducted in selected regions (supra/sub oesophageal masses) of the Octopus vulgaris brain detected a cytoplasmic poly-ADP-ribose polymerase (more than 90% of total enzyme activity). The protein was identified as the vault-free form of vault-poly-ADP-ribose polymerase. The present research extends and integrates the biochemical characterization of poly-ADP-ribosylation system, namely, reaction product, i.e., poly-ADP-ribose, and acceptor proteins, in the O. vulgaris brain. Immunochemical analyses evidenced that the sole poly-ADP-ribose acceptor was the octopus cytoskeleton 50-kDa actin. It was present in both free, endogenously poly-ADP-ribosylated form (70kDa) and in complex with V-poly-ADP-ribose polymerase and poly-ADP-ribose (260kDa). The components of this complex, alkali and high salt sensitive, were purified and characterized. The kind and the length of poly-ADP-ribose corresponded to linear chains of 30-35 ADP-ribose units, in accordance with the features of the polymer synthesized by the known vault-poly-ADP-ribose polymerase. In vitro experiments showed that V-poly-ADP-ribose polymerase activity of brain cytoplasmic fraction containing endogenous actin increased upon the addition of commercial actin and was highly reduced by ATP. Anti-actin immunoblot of the mixture in the presence and absence of ATP showed that the poly-ADP-ribosylation of octopus actin is a dynamic process balanced by the ATP-dependent polymerization of the cytoskeleton protein, a fundamental mechanism for synaptic plasticity.
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Affiliation(s)
- Anna De Maio
- Biochemistry, Department of Biology, University of Naples Federico II, 80126, Naples, Italy
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