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Naloka K, Kuntaveesuk A, Muangchinda C, Chavanich S, Viyakarn V, Chen B, Pinyakong O. Pseudomonas and Pseudarthrobacter are the key players in synergistic phenanthrene biodegradation at low temperatures. Sci Rep 2024; 14:11976. [PMID: 38796616 PMCID: PMC11127967 DOI: 10.1038/s41598-024-62829-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 05/21/2024] [Indexed: 05/28/2024] Open
Abstract
Hydrocarbon contamination, including contamination with polycyclic aromatic hydrocarbons (PAHs), is a major concern in Antarctica due to the toxicity, recalcitrance and persistence of these compounds. Under the Antarctic Treaty, nonindigenous species are not permitted for use in bioremediation at polluted sites in the Antarctic region. In this study, three bacterial consortia (C13, C15, and C23) were isolated from Antarctic soils for phenanthrene degradation. All isolated bacterial consortia demonstrated phenanthrene degradation percentages ranging from 45 to 85% for 50 mg/L phenanthrene at 15 ℃ within 5 days. Furthermore, consortium C13 exhibited efficient phenanthrene degradation potential across a wide range of environmental conditions, including different temperature (4-30 ℃) and water availability (without polyethylene glycol (PEG) 6000 or 30% PEG 6000 (w/v)) conditions. Sequencing analysis of 16S rRNA genes revealed that Pseudomonas and Pseudarthrobacter were the dominant genera in the phenanthrene-degrading consortia. Moreover, six cultivable strains were isolated from these consortia, comprising four strains of Pseudomonas, one strain of Pseudarthrobacter, and one strain of Paeniglutamicibacter. These isolated strains exhibited the ability to degrade 50 mg/L phenanthrene, with degradation percentages ranging from 4 to 22% at 15 ℃ within 15 days. Additionally, the constructed consortia containing Pseudomonas spp. and Pseudarthrobacter sp. exhibited more effective phenanthrene degradation (43-52%) than did the individual strains. These results provide evidence that Pseudomonas and Pseudarthrobacter can be potential candidates for synergistic phenanthrene degradation at low temperatures. Overall, our study offers valuable information for the bioremediation of PAH contamination in Antarctic environments.
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Affiliation(s)
- Kallayanee Naloka
- Center of Excellence in Microbial Technology for Marine Pollution Treatment (MiTMaPT), Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
- Research Program on Remediation Technologies for Petroleum Contamination, Center of Excellence on Hazardous Substance Management (HSM), Bangkok, 10330, Thailand
| | - Aunchisa Kuntaveesuk
- Center of Excellence in Microbial Technology for Marine Pollution Treatment (MiTMaPT), Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Chanokporn Muangchinda
- Center of Excellence in Microbial Technology for Marine Pollution Treatment (MiTMaPT), Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
- International Postgraduate Programs in Hazardous Substance and Environmental Management, Graduate School, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Suchana Chavanich
- Reef Biology Research Group, Department of Marine Science, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Voranop Viyakarn
- Reef Biology Research Group, Department of Marine Science, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Bo Chen
- Polar Biological Science Division, Polar Research Institute of China, Shanghai, China
| | - Onruthai Pinyakong
- Center of Excellence in Microbial Technology for Marine Pollution Treatment (MiTMaPT), Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
- Research Program on Remediation Technologies for Petroleum Contamination, Center of Excellence on Hazardous Substance Management (HSM), Bangkok, 10330, Thailand.
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Korneykova MV, Myazin VA, Fokina NV, Chaporgina AA, Nikitin DA, Dolgikh AV. Structure of Microbial Communities and Biological Activity in Tundra Soils of the Euro-Arctic Region (Rybachy Peninsula, Russia). Microorganisms 2023; 11:1352. [PMID: 37317328 DOI: 10.3390/microorganisms11051352] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 05/14/2023] [Accepted: 05/15/2023] [Indexed: 06/16/2023] Open
Abstract
The relevance of the Arctic regions' study is rapidly increasing due to the sensitive response of fragile ecosystems to climate change and anthropogenic pressure. The microbiome is an important component that determines the soils' functioning and an indicator of changes occurring in ecosystems. Rybachy Peninsula is the northernmost part of the continental European Russia and is almost completely surrounded by Barents Sea water. For the first time, the microbial communities of the Entic Podzol, Albic Podzol, Rheic Histosol and Folic Histosol as well as anthropogenically disturbed soils (chemical pollution and human impact, growing crops) on the Rybachy Peninsula were characterized using plating and fluorescence microscopy methods, in parallel with the enzymatic activity of soils. The amount and structure of soil microbial biomass, such as the total biomass of fungi and prokaryote, the length and diameter of fungal and actinomycete mycelium, the proportion of spores and mycelium in the fungal biomass, the number of spores and prokaryotic cells, the proportion of small and large fungal spores and their morphology were determined. In the soils of the peninsula, the fungal biomass varied from 0.121 to 0.669 mg/g soil. The biomass of prokaryotes in soils ranged from 9.22 to 55.45 μg/g of soil. Fungi predominated, the proportion of which in the total microbial biomass varied from 78.5 to 97.7%. The number of culturable microfungi ranged from 0.53 to 13.93 × 103 CFU/g in the topsoil horizons, with a maximum in Entic Podzol and Albic Podzol soils and a minimum in anthropogenically disturbed soil. The number of culturable copiotrophic bacteria varied from 41.8 × 103 cells/g in a cryogenic spot to 5551.3 × 103 cells /g in anthropogenically disturbed soils. The number of culturable oligotrophic bacteria ranged from 77.9 to 12,059.6 × 103 cells/g. Changes in natural soils because of anthropogenic impact and a change in vegetation types have led to a change in the structure of the community of soil microorganisms. Investigated tundra soils had high enzymatic activity in native and anthropogenic conditions. The β-glucosidase and urease activity were comparable or even higher than in the soils of more southern natural zone, and the activity of dehydrogenase was 2-5 times lower. Thus, despite the subarctic climatic conditions, local soils have a significant biological activity upon which the productivity of ecosystems largely depends. The soils of the Rybachy Peninsula have a powerful enzyme pool due to the high adaptive potential of soil microorganisms to the extreme conditions of the Arctic, which allows them to perform their functions even under conditions of anthropogenic interference.
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Affiliation(s)
- Maria V Korneykova
- Smart Urban Nature Research Center, RUDN University, 6 Miklukho-Maklaya St, Moscow 117198, Russia
- Department of Ecology of Microorganisms, Institute of North Industrial Ecology Problems-Subdivision of the Federal Research Centre "Kola Science Centre of Russian Academy of Science", Apatity 184209, Russia
| | - Vladimir A Myazin
- Department of Ecology of Microorganisms, Institute of North Industrial Ecology Problems-Subdivision of the Federal Research Centre "Kola Science Centre of Russian Academy of Science", Apatity 184209, Russia
| | - Nadezhda V Fokina
- Department of Ecology of Microorganisms, Institute of North Industrial Ecology Problems-Subdivision of the Federal Research Centre "Kola Science Centre of Russian Academy of Science", Apatity 184209, Russia
| | - Alexandra A Chaporgina
- Department of Ecology of Microorganisms, Institute of North Industrial Ecology Problems-Subdivision of the Federal Research Centre "Kola Science Centre of Russian Academy of Science", Apatity 184209, Russia
| | - Dmitry A Nikitin
- Department of Soil Biology and Biochemistry, V.V. Dokuchaev Soil Science Institute, Moscow 119017, Russia
| | - Andrey V Dolgikh
- Department of Soil Geography and Evolution, Institute of Geography, Russian Academy of Sciences, Moscow 119017, Russia
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Znój A, Gawor J, Gromadka R, Chwedorzewska KJ, Grzesiak J. Root-Associated Bacteria Community Characteristics of Antarctic Plants: Deschampsia antarctica and Colobanthus quitensis-a Comparison. MICROBIAL ECOLOGY 2022; 84:808-820. [PMID: 34661728 PMCID: PMC9622554 DOI: 10.1007/s00248-021-01891-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 09/30/2021] [Indexed: 05/11/2023]
Abstract
Colobanthus quitensis (Kunth) Bartl. and Deschampsia antarctica Desv. are the only Magnoliophyta to naturally colonize the Antarctic region. The reason for their sole presence in Antarctica is still debated as there is no definitive consensus on how only two unrelated flowering plants managed to establish breeding populations in this part of the world. In this study, we have explored and compared the rhizosphere and root-endosphere dwelling microbial community of C. quitensis and D. antarctica specimens sampled in maritime Antarctica from sites displaying contrasting edaphic characteristics. Bacterial phylogenetic diversity (high-throughput 16S rRNA gene fragment targeted sequencing) and microbial metabolic activity (Biolog EcoPlates) with a geochemical soil background were assessed. Gathered data showed that the microbiome of C. quitensis root system was mostly site-dependent, displaying different characteristics in each of the examined locations. This plant tolerated an active bacterial community only in severe conditions (salt stress and nutrient deprivation), while in other more favorable circumstances, it restricted microbial activity, with a possibility of microbivory-based nutrient acquisition. The microbial communities of D. antarctica showed a high degree of similarity between samples within a particular rhizocompartment. The grass' endosphere was significantly enriched in plant beneficial taxa of the family Rhizobiaceae, which displayed obligatory endophyte characteristics, suggesting that at least part of this community is transmitted vertically. Ultimately, the ecological success of C. quitensis and D. antarctica in Antarctica might be largely attributed to their associations and management of root-associated microbiota.
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Affiliation(s)
- Anna Znój
- Department of Antarctic Biology, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106, Warsaw, Poland
- Botanical Garden-Center for Biological Diversity Conservation, Polish Academy of Sciences, Prawdziwka 2, 02-973, Warsaw, Poland
| | - Jan Gawor
- Environmental Laboratory of DNA Sequencing and Synthesis, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106, Warsaw, Poland
| | - Robert Gromadka
- Environmental Laboratory of DNA Sequencing and Synthesis, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106, Warsaw, Poland
| | - Katarzyna J Chwedorzewska
- Department of Botany, Warsaw, University of Life Sciences-SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Jakub Grzesiak
- Department of Antarctic Biology, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106, Warsaw, Poland.
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Nikitin DA, Semenov MV. Characterization of Franz Josef Land Soil Mycobiota by Microbiological Plating and Real-time PCR. Microbiology (Reading) 2022. [DOI: 10.1134/s002626172201009x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Severgnini M, Canini F, Consolandi C, Camboni T, Paolo D'Acqui L, Mascalchi C, Ventura S, Zucconi L. Highly differentiated soil bacterial communities in Victoria Land macro-areas (Antarctica). FEMS Microbiol Ecol 2021; 97:6307020. [PMID: 34151349 DOI: 10.1093/femsec/fiab087] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 06/17/2021] [Indexed: 11/13/2022] Open
Abstract
Ice-free areas of Victoria Land, in Antarctica, are characterized by different terrestrial ecosystems, that are dominated by microorganisms supporting highly adapted communities. Despite the unique conditions of these ecosystems, reports on their bacterial diversity are still fragmentary. From this perspective, 60 samples from 14 localities were analyzed. These localities were distributed in coastal sites with differently developed biological soil crusts, inner sites in the McMurdo Dry Valleys with soils lacking of plant coverage, and a site called Icarus Camp, with a crust developed on a thin locally weathered substrate of the underlying parent granitic-rock. Bacterial diversity was studied through 16S rRNA metabarcoding sequencing. Communities diversity, composition and the abundance and composition of different taxonomic groups were correlated to soil physicochemical characteristics. Firmicutes, Bacteroidetes, Cyanobacteria and Proteobacteria dominated these communities. Most phyla were mainly driven by soil granulometry, an often disregarded parameter and other abiotic parameters. Bacterial composition differed greatly among the three macrohabitats, each having a distinct bacterial profile. Communities within the two main habitats (coastal and inner ones) were well differentiated from each other as well, therefore depending on site-specific physicochemical characteristics. A core community of the whole samples was observed, mainly represented by Firmicutes and Bacteroidetes.
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Affiliation(s)
- Marco Severgnini
- Institute of Biomedical Technologies, National Research Council (ITB-CNR), via f.lli Cervi, 93, 20054, Segrate, Italy
| | - Fabiana Canini
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università s.n.c., 01100, Viterbo, Italy
| | - Clarissa Consolandi
- Institute of Biomedical Technologies, National Research Council (ITB-CNR), via f.lli Cervi, 93, 20054, Segrate, Italy
| | - Tania Camboni
- Institute of Biomedical Technologies, National Research Council (ITB-CNR), via f.lli Cervi, 93, 20054, Segrate, Italy
| | - Luigi Paolo D'Acqui
- Terrestria Ecosystems Research Institute, National Research Council (IRET-CNR), Via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Cristina Mascalchi
- Terrestria Ecosystems Research Institute, National Research Council (IRET-CNR), Via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Stefano Ventura
- Terrestria Ecosystems Research Institute, National Research Council (IRET-CNR), Via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy.,The Italian Embassy in Israel, Trade Tower, 25 Hamered Street, 68125, Tel Aviv, Israel
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università s.n.c., 01100, Viterbo, Italy
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Ogaki MB, Vieira R, Muniz MC, Zani CL, Alves TMA, Junior PAS, Murta SMF, Barbosa EC, Oliveira JG, Ceravolo IP, Pereira PO, Rosa CA, Rosa LH. Diversity, ecology, and bioprospecting of culturable fungi in lakes impacted by anthropogenic activities in Maritime Antarctica. Extremophiles 2020; 24:637-655. [PMID: 32533308 DOI: 10.1007/s00792-020-01183-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 06/02/2020] [Indexed: 12/20/2022]
Abstract
In this study, we accessed culturable fungal assemblages present in the sediments of three lakes potentially impacted anthropogenically in the Fildes Peninsula, King George Island, Antarctica and identified 63 taxa. Cladosporium sp. 2, Pseudeurotium hygrophilum, and Pseudogymnoascus verrucosus were recovered from the sampled sediments of all lakes. High concentrations of metals and the lowest fungal diversity indices were detected in the sediments of the Central Lake, which can be influenced by human activities due to their proximity to research stations to those of the other two lakes, which were far from the Antarctic stations. At least one type of biological activity was demonstrated by 40 fungal extracts. Among these, P. hygrophilum, P. verrucosus, Penicillium glabrum, and Penicillium solitum demonstrated strong trypanocidal, herbicidal, and antifungal activities. Our results suggest that an increase of the anthropogenic activities in the region might have affected the microbial diversity and composition. In addition, the fungal diversity in these lakes may be a useful model to study the effect of anthropogenic activities in Antarctica. We isolated a diverse group of fungal taxa from Antarctic lake sediments, which have the potential to produce novel compounds for the both the medical and agriculture sectors.
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Affiliation(s)
- Mayara B Ogaki
- Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil
| | - Rosemary Vieira
- Instituto de Geociências, Universidade Federal Fluminense, Niterói, RJ, Brasil
| | - Marcelo C Muniz
- Instituto de Geociências, Universidade Federal Fluminense, Niterói, RJ, Brasil
| | - Carlos L Zani
- Instituto René Rachou, FIOCRUZ-Minas, Belo Horizonte, MG, Brasil
| | - Tânia M A Alves
- Instituto René Rachou, FIOCRUZ-Minas, Belo Horizonte, MG, Brasil
| | | | | | | | | | | | | | - Carlos A Rosa
- Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil
| | - Luiz H Rosa
- Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil.
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Bacterial communities versus anthropogenic disturbances in the Antarctic coastal marine environment. ACTA ACUST UNITED AC 2019. [DOI: 10.1007/s42398-019-00064-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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