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Bouizgarne B, Bakki M, Boutasknit A, Banane B, El Ouarrat H, Ait El Maalem S, Amenzou A, Ghousmi A, Meddich A. Phosphate and potash solubilizing bacteria from Moroccan phosphate mine showing antagonism to bacterial canker agent and inducing effective tomato growth promotion. FRONTIERS IN PLANT SCIENCE 2023; 14:970382. [PMID: 36968412 PMCID: PMC10030999 DOI: 10.3389/fpls.2023.970382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
Abstract
Most agricultural soils are facing limited phosphorus availability that challenges modern agriculture. Phosphate solubilizing microbia (PSM) has been explored extensively as potential biofertilizers for plant growth and nutrition, and harnessing phosphate rich areas could provide such beneficial microorganisms. Isolation of PSM from Moroccan rock phosphate led to the selection of two bacterial isolates, Bg22c and Bg32c, showing high solubilization potential. The two isolates were also tested for other in vitro PGPR effects and compared to a non-phosphate solubilizing bacterium Bg15d. In addition to phosphates, Bg22c and Bg32c were able to solubilize insoluble potassium and zinc forms (P, K, and Zn solubilizers) and produce indole-acetic acid (IAA). Mechanisms of solubilization involved production of organic acids as demonstrated by HPLC. In vitro, the isolates Bg22c and Bg15d were able to antagonize the phytopathogenic bacteria Clavibacter michiganensis subsp. michiganensis, causal agent of tomato bacterial canker disease. Phenotypic and molecular identification by 16S rDNA sequencing demonstrated delineation of Bg32c and Bg15d as members of the genus Pseudomonas and Bg22c as member of the genus Serratia. The two isolates Bg22c and Bg32c were further tested either alone or in a consortium and compared to the non-P, K, and Zn solubilizing Pseudomonas strain Bg15d for their efficacy to promote tomato growth and yield. They were also compared to treatment with a conventional NPK fertilizer. Under greenhouse conditions, Pseudomonas strain Bg32c remarkably improved the growth of whole plant height, root length, shoot and root weight, number of leaves and fruits, as well as fruit fresh weight. This strain also induced stomatal conductance enhancement. The strain also improved total soluble phenolic compounds, total sugars, protein, phosphorus and phenolic compounds contents compared to the negative control. All increases were more pronounced in plants inoculated with strain Bg32c in comparison with control and strain Bg15d. The strain Bg32c could be considered a potential candidate for formulation of a biofertilizer in order to improve tomato growth.
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Affiliation(s)
- B. Bouizgarne
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - M. Bakki
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - A. Boutasknit
- Laboratory of Agro-Food, Biotechnologies & Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University (UCA), Marrakesh, Morocco
| | - B. Banane
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - H. El Ouarrat
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - S. Ait El Maalem
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - A. Amenzou
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - A. Ghousmi
- Laboratory of Plant Biotechnology, Department of Biology, Faculty of Sciences, Ibn Zohr University (UIZ), Agadir, Morocco
| | - A. Meddich
- Laboratory of Agro-Food, Biotechnologies & Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University (UCA), Marrakesh, Morocco
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Boubekri K, Soumare A, Mardad I, Lyamlouli K, Ouhdouch Y, Hafidi M, Kouisni L. Multifunctional role of Actinobacteria in agricultural production sustainability: a review. Microbiol Res 2022; 261:127059. [DOI: 10.1016/j.micres.2022.127059] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 10/26/2021] [Accepted: 05/01/2022] [Indexed: 12/13/2022]
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Suárez-Moreno ZR, Vinchira-Villarraga DM, Vergara-Morales DI, Castellanos L, Ramos FA, Guarnaccia C, Degrassi G, Venturi V, Moreno-Sarmiento N. Plant-Growth Promotion and Biocontrol Properties of Three Streptomyces spp. Isolates to Control Bacterial Rice Pathogens. Front Microbiol 2019; 10:290. [PMID: 30858835 PMCID: PMC6398372 DOI: 10.3389/fmicb.2019.00290] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Accepted: 02/04/2019] [Indexed: 11/23/2022] Open
Abstract
Bacterial Panicle Blight caused by Burkholderia glumae is a major disease of rice, which has dramatically affected rice production around the world in the last years. In this study we describe the assessment of three Streptomyces isolates as biocontrol agents for B. glumae. Additionally, the presence of other plant-growth promoting abilities and their possible beneficial effects upon their inoculation on rice plants was evaluated as an ecological analysis for their future inoculation in rice crops. Two isolates (A20 and 5.1) inhibited growth of virulent B. glumae strains, as well as a wide range of bacterial and fungal species, while a third strain (7.1) showed only antifungal activity. In vitro tests demonstrated the ability of these strains to produce siderophores, Indoleacetic acid (IAA), extracellular enzymes and solubilizing phosphate. Greenhouse experiments with two rice cultivars indicated that Streptomyces A20 is able to colonize rice plants and promote plant growth in both cultivars. Furthermore, an egfp tagged mutant was generated and colonization experiments were performed, indicating that Streptomyces A20 –GFP was strongly associated with root hairs, which may be related to the plant growth promotion observed in the gnotobiotic experiments. In order to characterize the antimicrobial compounds produced by strain A20 bacteria, mass spectrometry analyses were performed. This technique indicated that A20 produced several antimicrobial compounds with sizes below 3 kDa and three of these molecules were identified as Streptotricins D, E and F. These findings indicate the potential of Streptomyces A20 as a biocontrol inoculant to protect rice plants against bacterial diseases.
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Affiliation(s)
| | | | | | | | - Freddy A Ramos
- Departamento de Química. Universidad Nacional de Colombia, Bogotá, Colombia
| | - Corrado Guarnaccia
- Biotechnology Development Unit, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy
| | - Giuliano Degrassi
- Bacteriology and Plant Bacteriology Group, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy
| | - Vittorio Venturi
- Bacteriology and Plant Bacteriology Group, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy
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Dinesh R, Srinivasan V, T E S, Anandaraj M, Srambikkal H. Endophytic actinobacteria: Diversity, secondary metabolism and mechanisms to unsilence biosynthetic gene clusters. Crit Rev Microbiol 2017; 43:546-566. [PMID: 28358596 DOI: 10.1080/1040841x.2016.1270895] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Endophytic actinobacteria, which reside in the inner tissues of host plants, are gaining serious attention due to their capacity to produce a plethora of secondary metabolites (e.g. antibiotics) possessing a wide variety of biological activity with diverse functions. This review encompasses the recent reports on endophytic actinobacterial species diversity, in planta habitats and mechanisms underlying their mode of entry into plants. Besides, their metabolic potential, novel bioactive compounds they produce and mechanisms to unravel their hidden metabolic repertoire by activation of cryptic or silent biosynthetic gene clusters (BGCs) for eliciting novel secondary metabolite production are discussed. The study also reviews the classical conservative techniques (chemical/biological/physical elicitation, co-culturing) as well as modern microbiology tools (e.g. next generation sequencing) that are being gainfully employed to uncover the vast hidden scaffolds for novel secondary metabolites produced by these endophytes, which would subsequently herald a revolution in drug engineering. The potential role of these endophytes in the agro-environment as promising biological candidates for inhibition of phytopathogens and the way forward to thoroughly exploit this unique microbial community by inducing expression of cryptic BGCs for encoding unseen products with novel therapeutic properties are also discussed.
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Affiliation(s)
- Raghavan Dinesh
- a ICAR-Indian Institute of Spices Research , Kozhikode, Kerala , India
| | | | - Sheeja T E
- a ICAR-Indian Institute of Spices Research , Kozhikode, Kerala , India
| | | | - Hamza Srambikkal
- a ICAR-Indian Institute of Spices Research , Kozhikode, Kerala , India
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Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clément C, Ouhdouch Y, van Wezel GP. Taxonomy, Physiology, and Natural Products of Actinobacteria. Microbiol Mol Biol Rev 2016; 80:1-43. [PMID: 26609051 PMCID: PMC4711186 DOI: 10.1128/mmbr.00019-15] [Citation(s) in RCA: 952] [Impact Index Per Article: 119.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Actinobacteria are Gram-positive bacteria with high G+C DNA content that constitute one of the largest bacterial phyla, and they are ubiquitously distributed in both aquatic and terrestrial ecosystems. Many Actinobacteria have a mycelial lifestyle and undergo complex morphological differentiation. They also have an extensive secondary metabolism and produce about two-thirds of all naturally derived antibiotics in current clinical use, as well as many anticancer, anthelmintic, and antifungal compounds. Consequently, these bacteria are of major importance for biotechnology, medicine, and agriculture. Actinobacteria play diverse roles in their associations with various higher organisms, since their members have adopted different lifestyles, and the phylum includes pathogens (notably, species of Corynebacterium, Mycobacterium, Nocardia, Propionibacterium, and Tropheryma), soil inhabitants (e.g., Micromonospora and Streptomyces species), plant commensals (e.g., Frankia spp.), and gastrointestinal commensals (Bifidobacterium spp.). Actinobacteria also play an important role as symbionts and as pathogens in plant-associated microbial communities. This review presents an update on the biology of this important bacterial phylum.
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Affiliation(s)
- Essaid Ait Barka
- Laboratoire de Stress, Défenses et Reproduction des Plantes, Unité de Recherche Vignes et Vins de Champagne, UFR Sciences, UPRES EA 4707, Université de Reims Champagne-Ardenne, Reims, France
| | - Parul Vatsa
- Laboratoire de Stress, Défenses et Reproduction des Plantes, Unité de Recherche Vignes et Vins de Champagne, UFR Sciences, UPRES EA 4707, Université de Reims Champagne-Ardenne, Reims, France
| | - Lisa Sanchez
- Laboratoire de Stress, Défenses et Reproduction des Plantes, Unité de Recherche Vignes et Vins de Champagne, UFR Sciences, UPRES EA 4707, Université de Reims Champagne-Ardenne, Reims, France
| | - Nathalie Gaveau-Vaillant
- Laboratoire de Stress, Défenses et Reproduction des Plantes, Unité de Recherche Vignes et Vins de Champagne, UFR Sciences, UPRES EA 4707, Université de Reims Champagne-Ardenne, Reims, France
| | - Cedric Jacquard
- Laboratoire de Stress, Défenses et Reproduction des Plantes, Unité de Recherche Vignes et Vins de Champagne, UFR Sciences, UPRES EA 4707, Université de Reims Champagne-Ardenne, Reims, France
| | | | - Hans-Peter Klenk
- School of Biology, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - Christophe Clément
- Laboratoire de Stress, Défenses et Reproduction des Plantes, Unité de Recherche Vignes et Vins de Champagne, UFR Sciences, UPRES EA 4707, Université de Reims Champagne-Ardenne, Reims, France
| | - Yder Ouhdouch
- Faculté de Sciences Semlalia, Université Cadi Ayyad, Laboratoire de Biologie et de Biotechnologie des Microorganismes, Marrakesh, Morocco
| | - Gilles P van Wezel
- Molecular Biotechnology, Institute of Biology, Sylvius Laboratories, Leiden University, Leiden, The Netherlands
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Trujillo ME, Riesco R, Benito P, Carro L. Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants. Front Microbiol 2015; 6:1341. [PMID: 26648923 PMCID: PMC4664631 DOI: 10.3389/fmicb.2015.01341] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2015] [Accepted: 11/16/2015] [Indexed: 01/07/2023] Open
Abstract
For a long time, it was believed that a healthy plant did not harbor any microorganisms within its tissues, as these were often considered detrimental for the plant. In the last three decades, the numbers of studies on plant microbe-interactions has led to a change in our view and we now know that many of these invisible partners are essential for the overall welfare of the plant. The application of Next Generation Sequencing techniques is a powerful tool that has permitted the detection and identification of microbial communities in healthy plants. Among the new plant microbe interactions recently reported several actinobacteria such as Micromonospora are included. Micromonospora is a Gram-positive bacterium with a wide geographical distribution; it can be found in the soil, mangrove sediments, and freshwater and marine ecosistems. In the last years our group has focused on the isolation of Micromonospora strains from nitrogen fixing nodules of both leguminous and actinorhizal plants and reported for the first time its wide distribution in nitrogen fixing nodules of both types of plants. These studies have shown how this microoganism had been largely overlooked in this niche due to its slow growth. Surprisingly, the genetic diversity of Micromonospora strains isolated from nodules is very high and several new species have been described. The current data indicate that Micromonospora saelicesensis is the most frequently isolated species from the nodular tissues of both leguminous and actinorhizal plants. Further studies have also been carried out to confirm the presence of Micromonospora inside the nodule tissues, mainly by specific in situ hybridization. The information derived from the genome of the model strain, Micromonospora lupini, Lupac 08, has provided useful information as to how this bacterium may relate with its host plant. Several strategies potentially necessary for Micromonospora to thrive in the soil, a highly competitive, and rough environment, and as an endophytic bacterium with the capacity to colonize the internal plant tissues which are protected from the invasion of other soil microbes were identified. The genome data also revealed the potential of M. lupini Lupac 08 as a plant growth promoting bacterium. Several loci involved in plant growth promotion features such as the production of siderophores, phytohormones, and the degradation of chitin (biocontrol) were also located on the genome and the functionality of these genes was confirmed in the laboratory. In addition, when several host plants species were inoculated with Micromonospora strains, the plant growth enhancing effect was evident under greenhouse conditions. Unexpectedly, a high number of plant-cell wall degrading enzymes were also detected, a trait usually found only in pathogenic bacteria. Thus, Micromonospora can be added to the list of new plant-microbe interactions. The current data indicate that this microorganism may have an important application in agriculture and other biotechnological processes. The available information is promising but limited, much research is still needed to determine which is the ecological function of Micromonospora in interaction with nitrogen fixing plants.
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Affiliation(s)
- Martha E Trujillo
- Departamento de Microbiología y Genética, Universidad de Salamanca Salamanca, Spain
| | - Raúl Riesco
- Departamento de Microbiología y Genética, Universidad de Salamanca Salamanca, Spain
| | - Patricia Benito
- Departamento de Microbiología y Genética, Universidad de Salamanca Salamanca, Spain
| | - Lorena Carro
- Departamento de Microbiología y Genética, Universidad de Salamanca Salamanca, Spain
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