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Cao Y, Gao C, Yang L, Zhou P, Sun D. Molecular simulation on the interaction between trehalose and asymmetric lipid bilayer mimicking the membrane of human red blood cells. Cryobiology 2024; 115:104898. [PMID: 38663665 DOI: 10.1016/j.cryobiol.2024.104898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 04/15/2024] [Accepted: 04/15/2024] [Indexed: 05/05/2024]
Abstract
Trehalose is widely acknowledged for its ability to stabilize plasma membranes during dehydration. However, the exact mechanism by which trehalose interacts with lipid bilayers remains presently unclear. In this study, we conducted atomistic molecular dynamic simulations on asymmetric model bilayers that mimic the membrane of human red blood cells at various trehalose and water contents. We considered three different hydration levels mimicking the full hydration to desiccation scenarios. Results indicate that the asymmetric distribution of lipids did not significantly influence the computed structural characteristics at full and low hydration. At dehydration, however, the order parameter obtained from the symmetric bilayer is significantly higher compared to those obtained from asymmetric ones. Analysis of hydrogen bonds revealed that the protective ability of trehalose is well described by the water replacement hypothesis at full and low hydration, while at dehydration other interaction mechanisms associated with trehalose exclusion from the bilayer may involve. In addition, we found that trehalose exclusion is not attributed to sugar saturation but rather to the reduction in hydration levels. It can be concluded that the protective effect of trehalose is not only related to the hydration level of the bilayer, but also closely tied to the asymmetric distribution of lipids within each leaflet.
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Affiliation(s)
- Yu Cao
- Department of Refrigeration & Cryogenics Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Cai Gao
- Department of Refrigeration & Cryogenics Engineering, Hefei University of Technology, Hefei, 230009, China.
| | - Lei Yang
- Department of Refrigeration & Cryogenics Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Pei Zhou
- Department of Refrigeration & Cryogenics Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Dongfang Sun
- Department of Refrigeration & Cryogenics Engineering, Hefei University of Technology, Hefei, 230009, China.
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2
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Gholami D, Sharafi M, Esmaeili V, Nadri T, Alaei L, Riazi G, Shahverdi A. Beneficial effects of trehalose and gentiobiose on human sperm cryopreservation. PLoS One 2023; 18:e0271210. [PMID: 37053285 PMCID: PMC10101468 DOI: 10.1371/journal.pone.0271210] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Accepted: 06/25/2022] [Indexed: 04/15/2023] Open
Abstract
The protection of human sperm during cryopreservation is of great importance to infertility. Recent studies have shown that this area is still a long way from its ultimate aim of maintaining the maximum viability of sperm in cryopreservation. The present study used trehalose and gentiobiose to prepare the human sperm freezing medium during the freezing-thawing. The freezing medium of sperm was prepared with these sugars, and the sperm were then cryopreserved. The viable cells, sperm motility parameters, sperm morphology, membrane integrity, apoptosis, acrosome integrity, DNA fragmentation, mitochondrial membrane potential, reactive oxygen radicals, and malondialdehyde concentration was evaluated using standard protocols. A higher percentage of the total and progressive motility, rate of viable sperm, cell membrane integrity, DNA and acrosome integrity, and mitochondrial membrane potential were observed in the two frozen treatment groups compared to the frozen control. The cells had less abnormal morphology due to treatment with the new freezing medium than the frozen control. The higher malondialdehyde and DNA fragmentation were significantly observed in the two frozen treatment groups than in the frozen control. According to the results of this study, the use of trehalose and gentiobiose in the sperm freezing medium is a suitable strategy for sperm freezing to improve its motion and cellular parameters.
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Affiliation(s)
- Dariush Gholami
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
- Faculty of Biotechnology, Amol University of Special Modern Technologies, Amol, Iran
- Department of Embryology at Reproduction Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran
| | - Mohsen Sharafi
- Department of Poultry Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Vahid Esmaeili
- Department of Embryology at Reproduction Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran
| | - Touba Nadri
- Department of Animal Science, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Loghman Alaei
- Department of Biological Science, Faculty of Science, University of Kurdistan, Sanandaj, Iran
| | - Gholamhossein Riazi
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
| | - Abdolhossein Shahverdi
- Department of Embryology at Reproduction Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran
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Poprawa I, Bartylak T, Kulpla A, Erdmann W, Roszkowska M, Chajec Ł, Kaczmarek Ł, Karachitos A, Kmita H. Verification of Hypsibius exemplaris Gąsiorek et al., 2018 (Eutardigrada; Hypsibiidae) application in anhydrobiosis research. PLoS One 2022; 17:e0261485. [PMID: 35303010 PMCID: PMC8932574 DOI: 10.1371/journal.pone.0261485] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Accepted: 02/25/2022] [Indexed: 01/03/2023] Open
Abstract
Anhydrobiosis is considered to be an adaptation of important applicative implications because it enables resistance to the lack of water. The phenomenon is still not well understood at molecular level. Thus, a good model invertebrate species for the research is required. The best known anhydrobiotic invertebrates are tardigrades (Tardigrada), considered to be toughest animals in the world. Hypsibius. exemplaris is one of the best studied tardigrade species, with its name "exemplaris" referring to the widespread use of the species as a laboratory model for various types of research. However, available data suggest that anhydrobiotic capability of the species may be overestimated. Therefore, we determined anhydrobiosis survival by Hys. exemplaris specimens using three different anhydrobiosis protocols. We also checked ultrastructure of storage cells within formed dormant structures (tuns) that has not been studied yet for Hys. exemplaris. These cells are known to support energetic requirements of anhydrobiosis. The obtained results indicate that Hys. exemplaris appears not to be a good model species for anhydrobiosis research.
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Affiliation(s)
- Izabela Poprawa
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Bankowa, Katowice, Poland
| | - Tomasz Bartylak
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
- Department of Bioenergetics, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
| | - Adam Kulpla
- Center for Advanced Technology, Adam Mickiewicz University, Uniwersytetu Poznańskiego, Poznań, Poland
- Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
| | - Weronika Erdmann
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
| | - Milena Roszkowska
- Department of Bioenergetics, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
| | - Łukasz Chajec
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Bankowa, Katowice, Poland
| | - Łukasz Kaczmarek
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
| | - Andonis Karachitos
- Department of Bioenergetics, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
| | - Hanna Kmita
- Department of Bioenergetics, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego, Poznań, Poland
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Life-On-Hold: Lanthanoids Rapidly Induce a Reversible Ametabolic State in Mammalian Cells. BIOLOGY 2021; 10:biology10070607. [PMID: 34209345 PMCID: PMC8301128 DOI: 10.3390/biology10070607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Revised: 06/21/2021] [Accepted: 06/24/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary We found that incubation with a solution containing ~50 mM neodymium (one of the rare-earth elements, REE) induces a rapid of active metabolism in mammalian cells. We have named this state REEbernation and found that the process involves a rapid replacement of calcium with neodymium in membranes and organelles of a cell, allowing it to maintain its shape and membrane integrity under extreme conditions, including vacuum. Furthermore, phosphate exchange is blocked because of non-dissolvable neodymium salts formation, which “discharged” the cell. We also showed that REEbernation is characterized by instant shutting down RNA transcriptional activity in the cells, providing an intriguing opportunity to study a snapshot of gene expression at a given time point. Finally, we found that the REEbernation state is reversible, and we could restore the metabolism and proliferation capacity of the cells. The REEbernation provides a new method to reversibly place a cell into “on-hold” mode, opening opportunities to develop protocols for biological samples fixation with a minimum effect on the omics profile for biomedical needs. Abstract Until now, the ability to reversibly halt cellular processes has been limited to cryopreservation and several forms of anabiosis observed in living organisms. In this paper we show that incubation of living cells with a solution containing ~50 mM neodymium induces a rapid shutdown of intracellular organelle movement and all other evidence of active metabolism. We have named this state REEbernation (derived from the terms REE (rare earth elements) and hibernation) and found that the process involves a rapid replacement of calcium with neodymium in membranes and organelles of a cell, allowing it to maintain its shape and membrane integrity under extreme conditions, such as low pressure. Furthermore, phosphate exchange is blocked as a result of non-dissolvable neodymium salts formation, which “discharged” the cell. We further showed that REEbernation is characterized by an immediate cessation of transcriptional activity in observed cells, providing an intriguing opportunity to study a snapshot of gene expression at a given time point. Finally, we found that the REEbernation state is reversible, and we could restore the metabolism and proliferation capacity of the cells. The REEbernation, in addition to being an attractive model to further investigate the basic mechanisms of cell metabolism control, also provides a new method to reversibly place a cell into “on-hold” mode, opening opportunities to develop protocols for biological samples fixation with a minimum effect on the omics profile for biomedical needs.
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Influence of steroids on hydrogen bonds in membranes assessed by near infrared spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2021; 1863:183553. [PMID: 33422482 DOI: 10.1016/j.bbamem.2021.183553] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 12/27/2020] [Accepted: 01/04/2021] [Indexed: 11/24/2022]
Abstract
The covalent OH bonds of water vibrate and absorb radiation in the near infrared (NIR) region at wavelengths that vary according to the strength of the bonds which, at the same time, are sensitive to the number and/or strength of hydrogen bonds. By means of multivariate analytical tools, such spectral shift was exploited to study the effect of temperature, 25-hydroxycholesterol and progesterone on the H-bonded network of water in DMPA membranes. Temperature was found as the dominating factor altering the NIR spectra of water and then the H-bonds. Increasing temperatures disrupt the H-bonds network, strengthening the OH covalent bonds. The disruption of the H-bonds along the 13-58 °C range was noticeably greater than that caused by lipids or steroids at 500 μM. The H-bonded network of the interfacial water in DMPA membranes was disrupted by the presence of 25-hydroxycholesterol, but no significant disruption was observed in the presence of progesterone. The reduction of the H-bonds entails a reduction in the aggregation of the interfacial water by a reduction in the number of H-bonded molecules. It is proposed that the number of water molecules bonded with two H-bonds diminishes and the number of molecules with no H-bond increases roughly at similar proportions, with a constant population of molecules with one H-bond. The opposed effects of steroids are discussed in the context of their opposed effects on the phase state of membranes, the membrane water content and the steroid molecular structure.
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Voronina TA, Nesmelov AA, Kondratyeva SA, Deviatiiarov RM, Miyata Y, Tokumoto S, Cornette R, Gusev OA, Kikawada T, Shagimardanova EI. New group of transmembrane proteins associated with desiccation tolerance in the anhydrobiotic midge Polypedilum vanderplanki. Sci Rep 2020; 10:11633. [PMID: 32669703 PMCID: PMC7363813 DOI: 10.1038/s41598-020-68330-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 03/16/2020] [Indexed: 12/22/2022] Open
Abstract
Larvae of the sleeping chironomid Polypedilum vanderplanki are known for their extraordinary ability to survive complete desiccation in an ametabolic state called "anhydrobiosis". The unique feature of P. vanderplanki genome is the presence of expanded gene clusters associated with anhydrobiosis. While several such clusters represent orthologues of known genes, there is a distinct set of genes unique for P. vanderplanki. These include Lea-Island-Located (LIL) genes with no known orthologues except two of LEA genes of P. vanderplanki, PvLea1 and PvLea3. However, PvLIL proteins lack typical features of LEA such as the state of intrinsic disorder, hydrophilicity and characteristic LEA_4 motif. They possess four to five transmembrane domains each and we confirmed membrane targeting for three PvLILs. Conserved amino acids in PvLIL are located in transmembrane domains or nearby. PvLEA1 and PvLEA3 proteins are chimeras combining LEA-like parts and transmembrane domains, shared with PvLIL proteins. We have found that PvLil genes are highly upregulated during anhydrobiosis induction both in larvae of P. vanderplanki and P. vanderplanki-derived cultured cell line, Pv11. Thus, PvLil are a new intriguing group of genes that are likely to be associated with anhydrobiosis due to their common origin with some LEA genes and their induction during anhydrobiosis.
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Affiliation(s)
- Taisiya A Voronina
- Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Alexander A Nesmelov
- Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Sabina A Kondratyeva
- Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Ruslan M Deviatiiarov
- Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Yugo Miyata
- Division of Biotechnology, Institute of Agrobiological Sciences, National Institute of Agriculture and Food Research Organization (NARO), Tsukuba, Japan
| | - Shoko Tokumoto
- Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan
| | - Richard Cornette
- Division of Biotechnology, Institute of Agrobiological Sciences, National Institute of Agriculture and Food Research Organization (NARO), Tsukuba, Japan
| | - Oleg A Gusev
- Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
- KFU-RIKEN Translational Genomics Unit, RIKEN Cluster for Science, Technology and Innovation Hub, RIKEN, Yokohama, Japan
- Laboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, RIKEN, Yokohama, Japan
| | - Takahiro Kikawada
- Division of Biotechnology, Institute of Agrobiological Sciences, National Institute of Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
- Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
| | - Elena I Shagimardanova
- Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
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Abstract
The disaccharide trehalose is accumulated in the cytoplasm of some organisms in response to harsh environmental conditions. Trehalose biosynthesis and accumulation are important for the survival of such organisms by protecting the structure and function of proteins and membranes. Trehalose affects the dynamics of proteins and water molecules in the bulk and the protein hydration shell. Enzyme catalysis and other processes dependent on protein dynamics are affected by the viscosity generated by trehalose, as described by the Kramers’ theory of rate reactions. Enzyme/protein stabilization by trehalose against thermal inactivation/unfolding is also explained by the viscosity mediated hindering of the thermally generated structural dynamics, as described by Kramers’ theory. The analysis of the relationship of viscosity–protein dynamics, and its effects on enzyme/protein function and other processes (thermal inactivation and unfolding/folding), is the focus of the present work regarding the disaccharide trehalose as the viscosity generating solute. Finally, trehalose is widely used (alone or in combination with other compounds) in the stabilization of enzymes in the laboratory and in biotechnological applications; hence, considering the effect of viscosity on catalysis and stability of enzymes may help to improve the results of trehalose in its diverse uses/applications.
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8
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Ngono F, Willart JF, Cuello GJ, Jimenez-Ruiz M, Yelles CMHB, Affouard F. Impact of Amorphization Methods on the Physicochemical Properties of Amorphous Lactulose. Mol Pharm 2020; 17:1-9. [PMID: 31647674 DOI: 10.1021/acs.molpharmaceut.9b00740] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
The influence of the amorphization technique on the physicochemical properties of amorphous lactulose was investigated. Four different amorphization techniques were used: quenching of the melt, milling, spray-drying, and freeze-drying, and amorphous samples were analyzed by differential scanning calorimetry, NMR spectroscopy, and powder X-ray diffraction analysis. Special attention was paid to the tautomeric composition and to the glass transition of amorphized materials. It was found that the tautomeric composition of the starting physical state (crystal, liquid, or solution) is preserved during the amorphization process and has a strong repercussion on the glass transition of the material. The correlation between these two properties as well as the plasticizing effect of the different tautomers was clarified by molecular dynamics simulations.
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Affiliation(s)
- Frederic Ngono
- Univ. Lille, CNRS, INRA, ENSCL, UMR 8207-UMET-Unité Matériaux et Transformations , F-59000 Lille , France.,Institut Laue Langevin , 71 Av. des Martyrs , CS 20156, F-38042 , Grenoble , France
| | - Jean-Francois Willart
- Univ. Lille, CNRS, INRA, ENSCL, UMR 8207-UMET-Unité Matériaux et Transformations , F-59000 Lille , France
| | - Gabriel Julio Cuello
- Institut Laue Langevin , 71 Av. des Martyrs , CS 20156, F-38042 , Grenoble , France
| | - Monica Jimenez-Ruiz
- Institut Laue Langevin , 71 Av. des Martyrs , CS 20156, F-38042 , Grenoble , France
| | | | - Frederic Affouard
- Univ. Lille, CNRS, INRA, ENSCL, UMR 8207-UMET-Unité Matériaux et Transformations , F-59000 Lille , France
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Fu Z, Agudelo P, Wells CE. Detoxification-related gene expression accompanies anhydrobiosis in the foliar nematode ( Aphelenchoides fragariae). J Nematol 2020; 52:1-12. [PMID: 32449331 PMCID: PMC7266049 DOI: 10.21307/jofnem-2020-047] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Indexed: 12/19/2022] Open
Abstract
The foliar nematode (Aphelenchoides fragariae) is a quarantined pest that infects a broad range of herbaceous and woody plants. Previous work has demonstrated its remarkable ability to survive rapid and extreme desiccation, although the specific molecular mechanisms underlying its anhydrobiotic response have not been characterized. The authors used RNA sequencing and de novo transcriptome assembly to compare patterns of gene expression between hydrated and 24-hr desiccated nematodes. In total, 2,083 and 953 genes were significantly up- and downregulated, respectively, in desiccated nematodes. Of the 100 annotated genes with the largest positive fold-changes, more than one third encoded putative detoxification-related proteins. Genes encoding enzymes of Phase I and Phase II detoxification systems were among the most strongly upregulated in the transcriptome, including 35 cytochrome p450s, 23 short chain dehydrogenase/reductases, 5 glutathione-S-transferases, and 22 UDP-glucuronosyltransferases. Genes encoding heat shock proteins, unfolded protein response enzymes, and intrinsically disordered proteins were also upregulated. Anhydrobiosis in A. fragariae appears to involve both strategies to minimize protein misfolding and aggregation, and wholesale induction of the cellular detoxification machinery. These processes may be controlled in part through the activity of forkhead transcription factors similar to Caenorhabditis elegans’ daf-16, a number of which were differentially expressed under desiccation.
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Affiliation(s)
- Zhen Fu
- School of Agricultural, Forest, and Environmental Sciences , Clemson University , Clemson, SC, 29634 ; Department of Entomology , Washington State University , Pullman, WA, 99164
| | - Paula Agudelo
- School of Agricultural, Forest, and Environmental Sciences , Clemson University , Clemson, SC, 29634
| | - Christina E Wells
- Department of Biological Sciences , Clemson University , Clemson, SC, 29634
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Hawkins LJ, Storey KB. Advances and applications of environmental stress adaptation research. Comp Biochem Physiol A Mol Integr Physiol 2019; 240:110623. [PMID: 31778815 DOI: 10.1016/j.cbpa.2019.110623] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Revised: 11/19/2019] [Accepted: 11/21/2019] [Indexed: 02/06/2023]
Abstract
Evolution has produced animals that survive extreme fluctuations in environmental conditions including freezing temperatures, anoxia, desiccating conditions, and prolonged periods without food. For example, the wood frog survives whole-body freezing every winter, arresting all gross physiological functions, but recovers functions upon thawing in the spring. Likewise, many small mammals hibernate for months at a time with minimal metabolic activity, organ perfusion, and movement, yet do not suffer significant muscle atrophy upon arousal. These conditions and the biochemical adaptations employed to deal with them can be viewed as Nature's answer to problems that humans wish to answer, particularly in a biomedical context. This review focuses on recent advances in the field of animal environmental stress adaptation, starting with an emphasis on new areas of research such as epigenetics and microRNA. We then examine new and emerging technologies such as genome editing, novel sequencing applications, and single cell analysis and how these can push us closer to a deeper understanding of biochemical adaptation. Next, evaluate the potential contributions of new high-throughput technologies (e.g. next-generation sequencing, mass spectrometry proteomics) to better understanding the adaptations that support these extreme phenotypes. Concluding, we examine some of the human applications that can be gained from understanding the principles of biochemical adaptation including organ preservation and treatments for conditions such as ischemic stroke and muscle disuse atrophy.
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Affiliation(s)
- Liam J Hawkins
- Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, ON K1S 5B6, Canada
| | - Kenneth B Storey
- Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, ON K1S 5B6, Canada.
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Anhydrobiosis in Yeasts: Changes in Mitochondrial Membranes Improve the Resistance of Saccharomyces cerevisiae Cells to Dehydration–Rehydration. FERMENTATION-BASEL 2019. [DOI: 10.3390/fermentation5030082] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Anhydrobiosis is a unique state of live organisms in which their metabolism is temporary reversibly suspended as the result of strong dehydration of their cells. This state is widely used currently during large-capacity production of active dry baker’s yeast. Other strains of the yeast Saccharomyces cerevisiae, as well as other yeast species that could potentially find use in modern biotechnology, are not resistant to dehydration–rehydration treatments. To improve their resistance, the main factors that influence cell survival during such treatment need to be revealed. This study showed the importance of mitochondria for yeast cell survival during transfer into anhydrobiosis, a factor that was strongly underestimated until this study. It was revealed that the external introduction inside yeast cells of 50 μM of lithocholic acid (LCA), an agent that induces changes in glycerophospholipids in mitochondrial membranes, in combination with 1% DMSO, may improve the survival rate of dehydrated cells. The influence of LCA upon yeast cell resistance to dehydration–rehydration was not linked with changes in the state of the cells’ plasma membrane.
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Abstract
Climate change has accentuated the importance of understanding how organisms respond to stresses imposed by changes to their environment, like water availability. Unusual organisms, called anhydrobiotes, can survive loss of almost all intracellular water. Desiccation tolerance of anhydrobiotes provides an unusual window to study the stresses and stress response imposed by water loss. Because of the myriad of stresses that could be induced by water loss, desiccation tolerance seemed likely to require many established stress effectors. The sugar trehalose and hydrophilins (small intrinsically disordered proteins) had also been proposed as stress effectors against desiccation because they were found in nearly all anhydrobiotes, and could mitigate desiccation-induced damage to model proteins and membranes in vitro. Here, we summarize in vivo studies of desiccation tolerance in worms, yeast, and tardigrades. These studies demonstrate the remarkable potency of trehalose and a subset of hydrophilins as the major stress effectors of desiccation tolerance. They act, at least in part, by limiting in vivo protein aggregation and loss of membrane integrity. The apparent specialization of individual hydrophilins for desiccation tolerance suggests that other hydrophilins may have distinct roles in mitigating additional cellular stresses, thereby defining a potentially new functionally diverse set of stress effectors.
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Affiliation(s)
- Douglas Koshland
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720
| | - Hugo Tapia
- Biology Program, California State University-Channel Islands, Camarillo, CA 93012
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Fonseca F, Pénicaud C, Tymczyszyn EE, Gómez-Zavaglia A, Passot S. Factors influencing the membrane fluidity and the impact on production of lactic acid bacteria starters. Appl Microbiol Biotechnol 2019; 103:6867-6883. [DOI: 10.1007/s00253-019-10002-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2019] [Revised: 06/25/2019] [Accepted: 06/27/2019] [Indexed: 01/09/2023]
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14
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Jönsson KI, Holm I, Tassidis H. Cell Biology of the Tardigrades: Current Knowledge and Perspectives. Results Probl Cell Differ 2019; 68:231-249. [PMID: 31598859 DOI: 10.1007/978-3-030-23459-1_10] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The invertebrate phylum Tardigrada has received much attention for containing species adapted to the most challenging environmental conditions where an ability to survive complete desiccation or freezing in a cryptobiotic state is necessary for persistence. Although research on tardigrades has a long history, the last decade has seen a dramatic increase in molecular biological ("omics") studies, most of them with the aim to reveal the biochemical mechanisms behind desiccation tolerance of tardigrades. Several other aspects of tardigrade cell biology have been studied, and we review some of them, including karyology, embryology, the role of storage cells, and the question of whether tardigrades are eutelic animals. We also review some of the theories about how anhydrobiotic organisms are able to maintain cell integrity under dry conditions, and our current knowledge on the role of vitrification and DNA protection and repair. Many aspects of tardigrade stress tolerance have relevance for human medicine, and the first transfers of tardigrade stress genes to human cells have now appeared. We expect this field to develop rapidly in the coming years, as more genomic information becomes available. However, many basic cell biological aspects remain to be investigated, such as immunology, cell cycle kinetics, cell metabolism, and culturing of tardigrade cells. Such development will be necessary to allow tardigrades to move from a nonmodel organism position to a true model organism with interesting associations with the current models C. elegans and D. melanogaster.
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Affiliation(s)
- K Ingemar Jönsson
- Department of Environmental Science and Bioscience, Kristianstad University, Kristianstad, Sweden.
| | - Ingvar Holm
- Department of Environmental Science and Bioscience, Kristianstad University, Kristianstad, Sweden
| | - Helena Tassidis
- Department of Environmental Science and Bioscience, Kristianstad University, Kristianstad, Sweden
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15
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Janis B, Belott C, Menze MA. Role of Intrinsic Disorder in Animal Desiccation Tolerance. Proteomics 2018; 18:e1800067. [DOI: 10.1002/pmic.201800067] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Revised: 08/10/2018] [Indexed: 11/12/2022]
Affiliation(s)
- Brett Janis
- Department of Biology University of Louisville Louisville KY 40292 USA
| | - Clinton Belott
- Department of Biology University of Louisville Louisville KY 40292 USA
| | - Michael A. Menze
- Department of Biology University of Louisville Louisville KY 40292 USA
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16
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Abstract
Freeze tolerance is an amazing winter survival strategy used by various amphibians and reptiles living in seasonally cold environments. These animals may spend weeks or months with up to ∼65% of their total body water frozen as extracellular ice and no physiological vital signs, and yet after thawing they return to normal life within a few hours. Two main principles of animal freeze tolerance have received much attention: the production of high concentrations of organic osmolytes (glucose, glycerol, urea among amphibians) that protect the intracellular environment, and the control of ice within the body (the first putative ice-binding protein in a frog was recently identified), but many other strategies of biochemical adaptation also contribute to freezing survival. Discussed herein are recent advances in our understanding of amphibian and reptile freeze tolerance with a focus on cell preservation strategies (chaperones, antioxidants, damage defense mechanisms), membrane transporters for water and cryoprotectants, energy metabolism, gene/protein adaptations, and the regulatory control of freeze-responsive hypometabolism at multiple levels (epigenetic regulation of DNA, microRNA action, cell signaling and transcription factor regulation, cell cycle control, and anti-apoptosis). All are providing a much more complete picture of life in the frozen state.
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Affiliation(s)
| | - Janet M. Storey
- Department of Biology, Carleton University, Ottawa, Ontario, Canada
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17
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Alarcón LM, de Los Angeles Frías M, Morini MA, Belén Sierra M, Appignanesi GA, Anibal Disalvo E. Water populations in restricted environments of lipid membrane interphases. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2016; 39:94. [PMID: 27761781 DOI: 10.1140/epje/i2016-16094-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2016] [Accepted: 09/20/2016] [Indexed: 06/06/2023]
Abstract
We employ molecular dynamics simulations to study the hydration properties of Dipalmitoylphosphatidylcholine (DPPC) bilayers, both in the gel and the liquid crystalline states. We show that while the tight hydration centers (PO and CO moieties) are significantly hydrated in both phases, the gel-fluid transition involves significant changes at the second hydration shell, particularly at the buried region between the hydrocarbon tails. Thus, while almost no buried water population exists in the gel state below the carbonyls, this hydrophobic region becomes partially water accesible in the liquid crystalline state. We shall also show that such water molecules present a lower H-bond coordination as compared to the molecules at the primary hydration shell. This means that, while the latter are arranged in relatively compact nanoclusters (as already proposed), the buried water molecules tend to organize themselves in less compact structures, typically strings or branched strings, with a scarce population of isolated molecules. This behavior is similar to that observed in other hydration contexts, like water penetrating carbon nanotubes or model hydrophobic channels or pores, and reflects the reluctance of water to sacrifice HB coordination.
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Affiliation(s)
- Laureano M Alarcón
- Sección Fisicoquímica, INQUISUR-UNS-CONICET, Universidad Nacional del Sur, Av. Alem 1253, 8000-Bahía, Blanca, Argentina
| | - M de Los Angeles Frías
- Laboratorio de Biointerfases y Sistemas Biomiméticos, Laboratorios Centrales, CITSE-UNSE, Santiago del Estero, Argentina
| | - Marcela A Morini
- Sección Fisicoquímica, INQUISUR-UNS-CONICET, Universidad Nacional del Sur, Av. Alem 1253, 8000-Bahía, Blanca, Argentina
| | - M Belén Sierra
- Sección Fisicoquímica, INQUISUR-UNS-CONICET, Universidad Nacional del Sur, Av. Alem 1253, 8000-Bahía, Blanca, Argentina
| | - Gustavo A Appignanesi
- Sección Fisicoquímica, INQUISUR-UNS-CONICET, Universidad Nacional del Sur, Av. Alem 1253, 8000-Bahía, Blanca, Argentina.
| | - E Anibal Disalvo
- Laboratorio de Biointerfases y Sistemas Biomiméticos, Laboratorios Centrales, CITSE-UNSE, Santiago del Estero, Argentina
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18
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Liu J, Tanrikut C, Wright DL, Lee GY, Toner M, Biggers JD, Toth TL. Cryopreservation of human spermatozoa with minimal non-permeable cryoprotectant. Cryobiology 2016; 73:162-7. [PMID: 27498216 DOI: 10.1016/j.cryobiol.2016.08.004] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2016] [Revised: 08/02/2016] [Accepted: 08/03/2016] [Indexed: 01/21/2023]
Abstract
Cryopreservation of human spermatozoa is a commonly used technique in assisted reproduction, however freezing low concentrations of sperm while maintaining adequate post-thaw motility remains a challenge. In an effort to optimize post-thaw motility yields, low volumes of human sperm were frozen in polyimide-coated fused silica micro-capillaries using 0.065 M, 0.125 M, 0.25 M, or 0.5 M trehalose as the only cryoprotectant. Micro-capillaries were either initially incubated in liquid nitrogen vapor before plunging into liquid nitrogen, or directly plunged into liquid nitrogen. Post thaw sperm counts and motility were estimated. Spermatozoa that were initially incubated in liquid nitrogen vapor had greater post thaw motility than those plunged immediately into liquid nitrogen independent of trehalose concentration. The protective effect of 0.125 M d-glucose, 3-O-methyl-d-glucopyranose, trehalose, sucrose, raffinose, or stachyose were evaluated individually. Trehalose and sucrose were the most effective cryoprotectants, recovering 69.0% and 68.9% of initial sperm motility, respectively.
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Affiliation(s)
- Jie Liu
- Department of Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Shriners Hospital for Children, Boston, MA 02114, USA
| | - Cigdem Tanrikut
- Department of Urology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA
| | - Diane L Wright
- Department of Obstetrics and Gynecology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA
| | - Gloria Y Lee
- Department of Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Shriners Hospital for Children, Boston, MA 02114, USA
| | - Mehmet Toner
- Department of Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Shriners Hospital for Children, Boston, MA 02114, USA
| | - John D Biggers
- Department of Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Shriners Hospital for Children, Boston, MA 02114, USA.
| | - Thomas L Toth
- Department of Obstetrics and Gynecology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA.
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