Bioremediation and Decolorization of Textile Dyes by White Rot Fungi and Laccase Enzymes

Laccase based per- and polyfluoroalkyl substances degradation: Status and future perspectives

Per- and polyfluoroalkyl substances (PFAS) with stable carbon-fluorine bonds are used in a wide range of industrial and commercial applications. Due to their extreme environmental persistence, PFAS have the potential to bioaccumulate, cause adverse effects, and present challenges regarding remediation. Recently, microbial and enzymatic reactions for sustainable degradation of PFAS have gained attention from researchers, although biological decomposition of PFAS remains challenging. Surprisingly, laccases, the multi-copper oxidases produced by various organisms, showed potential for PFAS degradation. Mediators play key roles in initiating laccase induced PFAS degradation and defluorination reactions. The laccase-catalyzed PFAS degradation reactions are relatively slower than normal biocatalytic reactions and the low activity of native laccases constrains their capacity to complete defluorination. With their low redox potential and narrow substrate scope, an innovative remediation strategy must be taken to accelerate this reaction. In this review we have summarized the status, challenges, and future perspectives of enzymatic PFAS degradation. The knowledge of laccase-based defluorination and the molecular basis of the reaction mechanisms overviewed in this study could inform future applications of laccases for sustainable PFAS remediation.

Decolorization of various dyes by microorganisms and green-synthesized nanoparticles: current and future perspective

Various types of colored pigments have been recovered naturally from biological sources including shells, flowers, insects, and so on in the past. At present, such natural colored substances (dyes) are replaced by manmade dyes. On the other hand, due to their continuous usage in various purpose, these artificial dyes or colored substances persist in the environmental surroundings. For example, industrial wastewater contains diverse pollutant substances including dyes. Several of these (artificial dyes) were found to be toxic to living organisms. In recent times, microbial-based removal of dye(s) has gained more attention. These methods were relatively inexpensive for eliminating such contaminants in the environmental system. Hence, various researchers were isolated microbes from environmental samples having the capability of decolorizing synthetic dyes from industrial wastewater. Furthermore, the microorganisms which are genetically engineered found higher degradative/decolorize capacity to target compounds in the natural environs. Very few reviews are available on specific dye treatment either by chemical treatments or by bacteria and/or fungal treatments. Here, we have enlightened literature reports on the removal of different dyes in microbes like bacteria (including anaerobic and aerobic), fungi, GEM, and microbial enzymes and also green-synthesized nanoparticles. This up-to-date literature survey will help environmental managements to co-up such contaminates in nature and will help in the decolorization of dyes.

Oxidoreductase enzymes: Characteristics, applications, and challenges as a biocatalyst

Oxidoreductases are enzymes with distinctive characteristics that favor their use in different areas, such as agriculture, environmental management, medicine, and analytical chemistry. Among these enzymes, oxidases, dehydrogenases, peroxidases, and oxygenases are very interesting. Because their substrate diversity, they can be used in different biocatalytic processes by homogeneous and heterogeneous catalysis. Immobilization of these enzymes has favored their use in the solution of different biotechnological problems, with a notable increase in the study and optimization of this technology in the last years. In this review, the main structural and catalytical features of oxidoreductases, their substrate specificity, immobilization, and usage in biocatalytic processes, such as bioconversion, bioremediation, and biosensors obtainment, are presented.

Transforming Lignin Biomass to Value: Interplay Between Ligninolytic Enzymes and Lignocellulose Depolymerization

Lignin is the main constituent of lignocellulosic biomasses, which have a significant untapped ability to replace ecologically unfavorable and non-renewable fossil fuels. The lignin is broken down by ligninolytic bacteria, which also use a peripheral pathway to transform heterogeneous lignin derivatives into central intermediates like protocatechuate or catechol. By undergoing ring cleavage through the -ketoadipate pathway, these intermediates become metabolites by producing acetyl-CoA for internal product biosynthesis, including the creation of triacylglycerols and polyhydroxyalkanoates. Expanding our understanding of ligninolytic microbial communities, strains, and enzymes through bioprospecting can help us better understand the metabolism of aromatics. The most viable idea for sustainable development is the valorization of lignin into biopolymers as well as other high-value goods. This process is now being used to generate a variety of biopolymers, including polyesters, epoxies, phenol resins, poly (lactic acids), poly hydroxyl alkanoates, and polyurethanes. Furthermore, lignin recalcitrance remained a possible barrier to efficient lignin valorization, prompting several efforts to design high-efficiency bioprocesses to produce specific polymer types as well as other important bioproducts.

Graphical Abstract

The mycoremediation potential of the armillarioids: a comparative genomics analysis

Genes involved in mycoremediation were identified by comparative genomics analysis in 10 armillarioid species and selected groups of white-rot Basidiomycota (14) and soft-rot Ascomycota (12) species to confine the distinctive bioremediation capabilities of the armillarioids. The genomes were explored using phylogenetic principal component analysis (pPCA), searching for genes already documented in a biocatalysis/biodegradation database. The results underlined a distinct, increased potential of aromatics-degrading genes/enzymes in armillarioids, with particular emphasis on a high copy number and diverse spectrum of benzoate 4-monooxygenase [EC:1.14.14.92] homologs. In addition, other enzymes involved in the degradation of various monocyclic aromatics were more abundant in the armillarioids than in the other white-rot basidiomycetes, and enzymes involved in the degradation of polycyclic aromatic hydrocarbons (PAHs) were more prevailing in armillarioids and other white-rot species than in soft-rot Ascomycetes. Transcriptome profiling of A. ostoyae and A. borealis isolates confirmed that several genes involved in the degradation of benzoates and other monocyclic aromatics were distinctively expressed in the wood-invading fungal mycelia. Data were consistent with armillarioid species offering a more powerful potential in degrading aromatics. Our results provide a reliable, practical solution for screening the likely fungal candidates for their full biodegradation potential, applicability, and possible specialization based on their genomics data.

Fungal assisted bio-treatment of environmental pollutants with comprehensive emphasis on noxious heavy metals: Recent updates

In the present time of speedy developments and industrialization, heavy metals are being uncovered in aquatic environment and soil via refining, electroplating, processing, mining, metallurgical activities, dyeing and other several metallic and metal based industrial and synthetic activities. Heavy metals like lead (Pb), mercury (Hg), cadmium (Cd), arsenic (As), Zinc (Zn), Cobalt (Co), Iron (Fe), and many other are considered as seriously noxious and toxic for the aquatic environment, human, and other aquatic lives and have damaging influences. Such heavy metals, which are very tough to be degraded, can be managed by reducing their potential through various processes like removal, precipitation, oxidation-reduction, bio-sorption, recovery, bioaccumulation, bio-mineralization etc. Microbes are known as talented bio-agents for the heavy metals detoxification process and fungi are one of the cherished bio-sources that show noteworthy aptitude of heavy metal sorption and metal tolerance. Thus, the main objective of the authors was to come with a comprehensive review having methodological insights on the novel and recent results in the field of mycoremediation of heavy metals. This review significantly assesses the potential talent of fungi in heavy metal detoxification and thus, in environmental restoration. Many reported works, methodologies and mechanistic sights have been evaluated to explore the fungal-assisted heavy metal remediation. Herein, a compact and effectual discussion on the recent mycoremediation studies of organic pollutants like dyes, petroleum, pesticides, insecticides, herbicides, and pharmaceutical wastes have also been presented.

Fungal Laccases: The Forefront of Enzymes for Sustainability

Enzymatic catalysis is one of the main pillars of sustainability for industrial production. Enzyme application allows minimization of the use of toxic solvents and to valorize the agro-industrial residues through reuse. In addition, they are safe and energy efficient. Nonetheless, their use in biotechnological processes is still hindered by the cost, stability, and low rate of recycling and reuse. Among the many industrial enzymes, fungal laccases (LCs) are perfect candidates to serve as a biotechnological tool as they are outstanding, versatile catalytic oxidants, only requiring molecular oxygen to function. LCs are able to degrade phenolic components of lignin, allowing them to efficiently reuse the lignocellulosic biomass for the production of enzymes, bioactive compounds, or clean energy, while minimizing the use of chemicals. Therefore, this review aims to give an overview of fungal LC, a promising green and sustainable enzyme, its mechanism of action, advantages, disadvantages, and solutions for its use as a tool to reduce the environmental and economic impact of industrial processes with a particular insight on the reuse of agro-wastes.

Mycoremediation of oil contaminant by Pleurotus florida (P.Kumm) in liquid culture

This study investigated the potential functions of Pleurotus florida (an edible mushroom) in the biodegradation of gas oil at concentrations of 0 (control), 2.5, 5, and 10% (V: V) for 30 days. The gas oil increased dry weight and protein concentration in all treatments (by an average of 19.5 and 108%, respectively). Moreover, the pH, surface tension (ST), and interfacial tension (IFT) were reduced by the mushroom supplementation. The lowest surface tension (31.9 mN m^-1) and the highest biosurfactant production belonged to the 10% gas oil treatment (0.845 ± 0.03 mg mL^-1). The results demonstrated that the adsorption isotherm agreed well with the Langmuir isotherm. The maximum Langmuir adsorption capacity was calculated at 0.743 mg g^-1 wet biomass of P. florida. The fungal supplementation efficiently remedied the total petroleum hydrocarbons (TPHs) by an average of 55% after 30 days. Gas chromatography (GC) analysis revealed that P. florida effectively detoxified C₁₃-C₂₈ hydrocarbons, Pristane, and Phytane, implying its high mycoremediation function. The toxicity test showed that mycoremediation increased the germination by an average of 35.82% ± 8.89 after 30 days. Laccase activity increased significantly with increasing gas oil concentration in the treatments. The maximum laccase activity was obtained in the 10% gas oil treatment (142.25 ± 0.72 U L^-1). The presence of pollutants was also associated with induction in the tyrosinase activity when compared to the control. These results underline the high mycoremediation capacity of P. florida through the involvement of biosurfactants, laccase, and tyrosinase.

Degradation of recalcitrant textile azo-dyes by fenton-based process followed by biochar polishing

The use of advanced oxidative processes (AOPs) is an efficient alternative for the treatment of textile wastewaters. The aim of this study was to assess the dye removal efficiency of a Fenton-based degradation process followed by a polishing step using biochar prepared from rice husk. Six recalcitrant textile dyes - Reactive Red 195 (D1), Synolon Brown S2 (D2), Orange Remazol RGB (D3), Yellow Synozol K3 (D4), Reactive Orange (D5), and Reactive Black 5 (D6) - were treated with Fenton and photo-Fenton processes (with and without biochar polishing) under optimized conditions. The results showed a general efficiency ranking: photo-Fenton + biochar ≈ Fenton + biochar > photo-Fenton ≈ Fenton. The Fenton process was also efficient for the regeneration of the dye-saturated biochar. The photo-Fenton + biochar process achieved the following color removal percentages: D1 (98.8%), D2 (99.7%), D3 (98.9%), D4 (96.3%), D5 (94.2%) and D6 (94.8%). This process was applied to a real conventionally-treated textile wastewater and analysis showed a reduction in BOD (87.5% degradation), COD (62.5% degradation) and color (93.5% mean removal). These results reveal the possibility for the reuse of the treated water for non-potable industrial uses, for example, floor washing or the cleaning of machines and toilet areas.

Mesoporous Carbons of Well-Organized Structure in the Removal of Dyes from Aqueous Solutions

Mesoporous carbons with differentiated properties were synthesized by using the method of impregnation of mesoporous well-organized silicas. The obtained carbonaceous materials and microporous activated carbon were investigated by applying different methods in order to determine their structural, surface and adsorption properties towards selected dyes from aqueous solutions. In order to verify applicability of adsorbents for removing dyes the equilibrium and kinetic experimental data were measured and analyzed by applying various equations and models. The structural and acid-base properties of the investigated carbons were evaluated by Small-Angle X-ray Scattering (SAXS) technique, adsorption/desorption of nitrogen, potentiometric titration, and Transmission Electron Microscopy (TEM). The results of these techniques are complementary, indicating the type of porosity and structural ordering, e.g., the pore sizes determined from the SAXS data are in good agreement with those obtained from nitrogen sorption data. The SAXS and TEM data confirm the regularity of mesoporous carbon structure. The adsorption experiment, especially kinetic measurements, reveals the utility of mesoporous carbons in dye removing, taking into account not only the adsorption uptake but also the adsorption rate.

Optimization of growth conditions for enhancing the production of microbial laccase and its application in treating antibiotic contamination in wastewater

In this work, seven indigenous macrofungal isolates were selected to screen for their laccase production capability. Among them, isolates viz., Pleurotus eryngii, Pleurotus florida, Pleurotus sajor caju and Gandoderma lucidum were found to exhibit high laccase activity in the preliminary studies and were thus selected for the optimization studies with an aim to enhance laccase production. The pH optimization studies were carried out between pH range of 4-6. The laccase activity and biomass were found to be optimum at pH 4, 4.5, 4.5 and 5 for P. eryngii, P. florida, P. sajor caju and G. lucidum, respectively. Optimization studies with chemical inducers namely, tannic acid, 2,6 dimethoxyphenol and copper sulphate at three different concentration levels were conducted and tannic acid at 2 mM concentration was found to increase the laccase activity to about 45% followed by 2,6 dimethoxyphenol (2 mM) with an increase of about 43% and copper sulphate (0.1 mM) showing 21% increase in the yield. Biodegradation studies utilizing laccase isolated from P. eryngii, P. florida and P. sajor caju was carried out for a commonly detected fluoroquinolone antibiotic, levofloxacin, in water and pharmaceutical wastewater. The results indicated that the degradation efficiency of levofloxacin using laccase isolated from P. eryngii (88.9%) was comparable to commercial laccase (89%). When the cost economics of using crude laccase was evaluated against commercial laccase it was evident that the total cost of the treatment could be reduced by 71.7% if commercial grade laccase was replaced by crude enzyme extracted from indigenous macrofungi such Pleurotus eryngii, Pleurotus florida, and Pleurotus sajor caju indicating a promising and cost-effective alternative for wastewater treatment.

Biodegradation and biosorption of Reactive Red 120 dye by immobilized Pseudomonas guariconensis: Kinetic and toxicity study

Reactive dyes are pernicious pollutants in textile effluent, which are to be treated passably before discharging into the environment. In the present study, a potential dye degrading bacterial strain Pseudomonas guariconensis was isolated from paddy rhizosphere and was characterized by 16S rRNA gene sequencing. The biodegradation ability of the strain was evaluated by time-based study with immobilized bacterial cells in calcium alginate biocarrier matrix and also with free cells. The results indicated that the strain exhibited maximum degradation of 91% when immobilized in the biocarrier matrix. The enzymatic study revealed the production of oxidoreductase enzymes. The degraded products were identified as 2-amino-3-phenylpropanoic acid and benzoquinone by gas chromatography-mass spectroscopy (GC-MS) analysis, and a degradative pathway was derived based on the enzymatic profile. A packed bed column was designed using P. guariconensis VITSAJ5 immobilized in calcium alginate beads as a biosorbent for the removal of Reactive Red 120. The immobilized bacterial cells exhibited 87% uptake of RR120, whereas the nonimmobilized bacterial cells exhibited a maximum uptake of 37%. The phytotoxicity analysis by seed germination assay revealed an enhanced plumule and radicle length, indicating the nontoxic byproducts after the treatment of Reactive Red 120 by VITSAJ5 compared to the untreated Reactive Red 120 solution. PRACTITIONER POINTS: Current study is the first report on Pseudomonas guariconensis capable of degrading reactive dyes (Reactive Red 120) It was observed that the degradation potential was maximum when cells were immobilized with Ca-Ag biocarrier matrix Breakdown metabolism of Reactive Red 120 was derived through pathway prediction Employing immobilized bacteria in a packed bed column found to possess a prominent biosorption ability on the matrix enhancing the degradation process Toxic reactive dye was converted into nontoxic compounds, evidenced by phytotoxicity studies.