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Hehn L, Deglmann P, Kühn M. Chelate Complexes of 3d Transition Metal Ions─A Challenge for Electronic-Structure Methods? J Chem Theory Comput 2024; 20:4545-4568. [PMID: 38805381 DOI: 10.1021/acs.jctc.3c01375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2024]
Abstract
Different electronic-structure methods were assessed for their ability to predict two important properties of the industrially relevant chelating agent nitrilotriacetic acid (NTA): its selectivity with respect to six different first-row transition metal ions and the spin-state energetics of its complex with Fe(III). The investigated methods encompassed density functional theory (DFT), the random phase approximation (RPA), coupled cluster (CC) theory, and the auxiliary-field quantum Monte Carlo (AFQMC) method, as well as the complete active space self-consistent field (CASSCF) method and the respective on-top methods: second-order N-electron valence state perturbation theory (NEVPT2) and multiconfiguration pair-density functional theory (MC-PDFT). Different strategies for selecting active spaces were explored, and the density matrix renormalization group (DMRG) approach was used to solve the largest active spaces. Despite somewhat ambiguous multi-reference diagnostics, most methods gave relatively good agreement with experimental data for the chemical reactions connected to the selectivity, which only involved transition-metal complexes in their high-spin state. CC methods yielded the highest accuracy followed by range-separated DFT and AFQMC. We discussed in detail that even higher accuracies can be obtained with NEVPT2, under the prerequisite that consistent active spaces along the entire chemical reaction can be selected, which was not the case for reactions involving Fe(III). A bigger challenge for electronic-structure methods was the prediction of the spin-state energetics, which additionally involved lower spin states that exhibited larger multi-reference diagnostics. Conceptually different, typically accurate methods ranging from CC theory via DMRG-NEVPT2 in combination with large active spaces to AFQMC agreed well that the high-spin state is energetically significantly favored over the other spin states. This was in contrast to most DFT functionals and RPA which yielded a smaller stabilization and some common DFT functionals and MC-PDFT even predicting the low-spin state to be energetically most favorable.
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Affiliation(s)
- Lukas Hehn
- Next Generation Computing, BASF SE, Pfalzgrafenstr. 1, 67061 Ludwigshafen, Germany
| | - Peter Deglmann
- Quantum Chemistry, BASF SE, Carl-Bosch-Str. 38, 67063 Ludwigshafen, Germany
| | - Michael Kühn
- Next Generation Computing, BASF SE, Pfalzgrafenstr. 1, 67061 Ludwigshafen, Germany
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Sasaki S, Morita A, Kameya T, Oya M. Improving the Removability of Mud Stains by Combining a Homopolymer and a Chelating Agent. J Oleo Sci 2024; 73:73-83. [PMID: 38171733 DOI: 10.5650/jos.ess23135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024] Open
Abstract
To improve the detergency of mud stains without triphosphate, we developed a new composition that enhances the detergency of mud stains more efficiently. To develop the composition, a new correction method based on the probability density functional method was used to compare the results of approximately 100 cleaning tests conducted on different days using various active ingredients. As a result of various evaluations, it was found that the combination of a homopolymer with a molecular weight of approximately 2000 and a chelating agent can effectively improve the detergency of particle stains. By combining washing experiments with different polymer concentrations, water hardness, turbidity, and reduced viscosity, we were able to estimate the expansion of the polymer and the washing mechanism using a combination of low-molecular-weight polymers and chelating agents.
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Affiliation(s)
- Shigeyo Sasaki
- Lion Corporation
- Graduate School of Environment and Information Sciences, Yokohama National University
| | | | - Takashi Kameya
- Graduate School of Environment and Information Sciences, Yokohama National University
| | - Masaru Oya
- Graduate School of Environment and Information Sciences, Yokohama National University
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Ismail EH, Souaya ER, Mohamed AA. Synthesis, characterization, and thermal analysis of two polymeric chromium ternary complexes with nitrilotriacetic acid and alanine or glycine. J Appl Polym Sci 2011. [DOI: 10.1002/app.35097] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Maerten E, Cabrera S, Kjærsgaard A, Jørgensen KA. Organocatalytic Asymmetric Direct Phosphonylation of α,β-Unsaturated Aldehydes: Mechanism, Scope, and Application in Synthesis. J Org Chem 2007; 72:8893-903. [DOI: 10.1021/jo7018587] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Eddy Maerten
- Danish National Research Foundation, Center for Catalysis, Department of Chemistry, Aarhus University,
DK-8000 Aarhus C, Denmark
| | - Silvia Cabrera
- Danish National Research Foundation, Center for Catalysis, Department of Chemistry, Aarhus University,
DK-8000 Aarhus C, Denmark
| | - Anne Kjærsgaard
- Danish National Research Foundation, Center for Catalysis, Department of Chemistry, Aarhus University,
DK-8000 Aarhus C, Denmark
| | - Karl Anker Jørgensen
- Danish National Research Foundation, Center for Catalysis, Department of Chemistry, Aarhus University,
DK-8000 Aarhus C, Denmark
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Pitter P, Sýkora V. Biodegradability of ethylenediamine-based complexing agents and related compounds. CHEMOSPHERE 2001; 44:823-826. [PMID: 11482674 DOI: 10.1016/s0045-6535(00)00512-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The biological degradability (Zahn-Wellens test) of ethylenediamine derivatives with carboxymethyl and 2-hydroxyethyl groups was investigated. Mixed bacterial culture (activated sludge) was used as inoculum (non-adapted sludge and sludge adapted at different mean biomass retention time, the so-called sludge age). Biodegradability of ethylene(propylene)di(tri)amine-based complexing agents depends on the character and number of substituents and nitrogen atoms in the molecule. Tetra(penta)substituted derivatives with two or more tertiary nitrogen atoms and carboxymethyl or 2-hydroxyethyl groups in the molecule (EDTA, DTPA, PDTA, HEDTA) are very stable from an environmental point of view. On the contrary, disubstituted derivatives with two secondary nitrogen atoms in the molecule (e.g., EDDA) are potentially degradable.
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Affiliation(s)
- P Pitter
- Department of Water Technology and Environmental Engineering, Institute of Chemical Technology in Prague, Czech Republic.
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Sýkora V, Pitter P, Bittnerová I, Lederer T. Biodegradability of ethylenediamine-based complexing agents. WATER RESEARCH 2001; 35:2010-2016. [PMID: 11337848 DOI: 10.1016/s0043-1354(00)00455-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Biological degradability of ethylenediamine derivatives depends on the type and number of substituents. The susceptibility to biodegradation decreases in the sequence of substituents -COCH3, -CH3, -C2H5, -CH2CH2OH, -CH2COOH and with polysubstitution. The biodegradability depends also on the kind and number of nitrogen atoms. Complexing agents with a single-nitrogen atom in the molecule (e.g. NTA) succumb relatively readily to biodegradation whereas, compounds with two or more tertiary amino groups are biologically highly stable and do not undergo biodegradation even in experiments with activated sludge adapted at an age of up to 30 days (EDTA, DTPA, PDTA, HEDTA). A lowering of the degree of substitution brings about an increased susceptibility to biodegradation. This holds, e.g., for replacement of tertiary amino groups with secondary ones; thus the symmetrically disubstituted ethylenediamine-N,N'-diacetic acid (EDDA) possesses still sufficient complexing ability while belonging already to the group of potentially degradable substances.
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Affiliation(s)
- V Sýkora
- Department of Water Technology and Environmental Engineering, Institute of Chemical Technology, CZ 166 28 Prague 6, Czech Republic.
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Bucheli-Witschel M, Egli T. Environmental fate and microbial degradation of aminopolycarboxylic acids. FEMS Microbiol Rev 2001; 25:69-106. [PMID: 11152941 DOI: 10.1111/j.1574-6976.2001.tb00572.x] [Citation(s) in RCA: 337] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Aminopolycarboxylic acids (APCAs) have the ability to form stable, water-soluble complexes with di- and trivalent metal ions. For that reason, synthetic APCAs are used in a broad range of domestic products and industrial applications to control solubility and precipitation of metal ions. Because most of these applications are water-based, APCAs are disposed of in wastewater and reach thus sewage treatment plants and the environment, where they undergo abiotic and/or biotic degradation processes. Recently, also natural APCAs have been described which are produced by plants or micro-organisms and are involved in the metal uptake by these organisms. For the two most widely used APCAs, nitrilotriacetate (NTA) and ethylenediaminetetraacetate (EDTA), transformation and mineralisation processes have been studied rather well, while for other xenobiotic APCAs and for the naturally occurring APCAs little is known on their fate in the environment. Whereas NTA is mainly degraded by bacteria under both oxic and anoxic conditions, biodegradation is apparently of minor importance for the environmental fate of EDTA. Photodegradation of iron(III)-complexed EDTA is supposed to be mostly responsible for its elimination. Isolation of a number of NTA- and EDTA-utilising bacterial strains has been reported and the spectrum of APCAs utilised by the different isolates indicates that some of them are able to utilise a range of different APCAs whereas others seem to be restricted to one compound. The two best characterised obligately aerobic NTA-utilising genera (Chelatobacter and Chelatococcus) are members of the alpha-subgroup of Proteobacteria. There is good evidence that they are present in fairly high numbers in surface waters, soils and sewage treatment plants. The key enzymes involved in NTA degradation in Chelatobacter and Chelatococcus have been isolated and characterised. The two first catabolic steps are catalysed by a monooxygenase (NTA MO) and a membrane-bound iminodiacetate dehydrogenase. NTA MO has been cloned and sequenced and its regulation as a function of growth conditions has been studied. Under denitrifying conditions, NTA catabolism is catalysed by a NTA dehydrogenase. EDTA breakdown was found to be initiated by a MO also which shares many characteristics with NTA MO from strictly aerobic NTA-degrading bacteria. In contrast, degradation of [S,S]-ethylenediaminedisuccinate ([S,S]-EDDS), a structural isomer of EDTA, was shown to be catalysed by an EDDS lyase in both an EDTA degrader and in a NTA-utilising Chelatococcus strain. So far, transport of APCAs into cells has only been studied for EDTA and the results obtained give strong evidence for an energy-dependent carrier system and Ca(2+) seems to be co-transported with EDTA. Due to their metal-complexing capacities, APCAs occur in the environment mostly in the metal-complexed form. Hence, the influence of metal speciation on various degradation processes is of utmost importance to understand the environmental behaviour of these compounds. In case of biodegradation, the effect of metal speciation is rather difficult to assess at the whole cell level and therefore only limited good data are available. In contrast, the influence of metal speciation on the intracellular enzymatic breakdown of APCAs is rather well documented but no generalising pattern applicable to all enzymes was found.
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Affiliation(s)
- M Bucheli-Witschel
- Swiss Federal Institute for Environmental Science and Technology, Department of Microbiology, Uberlandstrasse 133, CH-8600, Dübendorf, Switzerland
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Ding WH, Wu J, Semadeni M, Reinhard M. Occurrence and behavior of wastewater indicators in the Santa Ana River and the underlying aquifers. CHEMOSPHERE 1999; 39:1781-1794. [PMID: 10533715 DOI: 10.1016/s0045-6535(99)00072-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The occurrence and behavior of wastewater indicator compounds in the Santa Ana River (SAR) water and the underlying aquifer recharged by the SAR has been studied. The SAR contains a high proportion of tertiary treated wastewater effluents, up to 100% during summer and fall. The following water quality parameters were quantified: four specific wastewater indicator compounds, ethylene diaminetetraacetic acid (EDTA), nitrilotriacetic acid (NTA), a naphthalene dicarboxylate (NDC) isomer, alkylphenol polyethoxy carboxylates (APECs), and selected haloacetic acids (HAAs), nitrate, dissolved oxygen (DO), DOC, total carbohydrate, and phenolic substances. Statistical analysis indicated that normal distribution was adequate to describe the probability distribution of the constituents in most cases. In the river, the concentrations of wastewater indicator compounds decreased as the fraction of storm runoff increased. EDTA and NDC were detected in a monitoring well near the river and in two production wells 1.8 and 2.7 km down gradient with little apparent attenuation. By contrast, NTA, APECs, bromochloro- and dibromoacetic acids appeared to be attenuated significantly during infiltration of river water and groundwater transport.
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Affiliation(s)
- W H Ding
- Department of Civil and Environmental Engineering, Stanford University, CA 94305, USA
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Subsurface interactions of actinide species and microorganisms: Implications for the bioremediation of actinide-organic mixtures. J Radioanal Nucl Chem 1999. [DOI: 10.1007/bf02347481] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Palumbo AV, Lee SY, Boerman P. The effect of media composition on EDTA degradation by Agrobacterium sp. Appl Biochem Biotechnol 1994; 45-46:811-22. [PMID: 8010772 DOI: 10.1007/bf02941851] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
EDTA degradation by an Agrobacterium sp. has been examined by quantifying 14C-labeled CO2 produced from iron-[2-14C] EDTA and by measured loss of nonlabeled EDTA by HPLC. Fe-EDTA degradation resulted in a rise in pH, nitrate concentration, and ammonia concentration. Addition of glycerol resulted in suppression of Fe-EDTA degradation and in a decrease in pH and NH4+ concentration in the media. Addition of peptone or yeast extract did not affect degradation. Some of the components (e.g., biotin) of the media are not necessary for growth and biodegradation. Although cobalt-EDTA cannot be degraded, ferrous iron can be added to displace the cobalt.
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Affiliation(s)
- A V Palumbo
- Environmental Sciences Division, Oak Ridge National Laboratory, TN 37831-6036
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Auling G, Busse HJ, Egli T, El-Banna T, Stackebrandt E. Description of the Gram-Negative, Obligately Aerobic, Nitrilotriacetate (NTA)-Utilizing Bacteria as Chelatobacter heintzii, gen. nov., sp. nov., and Chelatococcus asaccharovorans, gen. nov., sp. nov. Syst Appl Microbiol 1993. [DOI: 10.1016/s0723-2020(11)80254-7] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Wilberg E, El-Banna T, Auling G, Egli T. Serological Studies on Nitrilotriacetic Acid (NTA)-Utilizing Bacteria: Distribution of Chelatobacter heintzii and Chelatococcus asaccharovorans in Sewage Treatment Plants and Aquatic Ecosystems. Syst Appl Microbiol 1993. [DOI: 10.1016/s0723-2020(11)80259-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Abstract
In landfills, deposited waste material is usually faced with strictly anoxic conditions. This means that the design of new biodegradable polymers must take into consideration that degradation should be possible especially in the absence of molecular oxygen. Poly-beta-hydroxybutyrate is depolymerized by the anaerobic fermenting bacterium Ilyobacter delafieldii through an extracellular hydrolase. Monomers are degraded inside the cells through classical beta-oxidation. Polyalkanoates containing odd-numbered or branched-chain acid monomers should he degraded in an analogous manner; in most cases the final mineralization of these residues requires special pathways. A comparison of the chemistry of natural polymer biodegradation leads to the conclusion that synthetic biodegradable polymers should be designed in the future to contain linkages which can be cleaved by extracellular hydrolytic enzymes. Recent findings on aerobic and anaerobic bacterial degradation of synthetic polyethers suggest that natural evolution of new depolymerizing enzymes, perhaps from existing hydrolases, could be possible in a reasonable amount of time, provided that the monomers are likely energy sources for a broad variety of microbes.
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Affiliation(s)
- B Schink
- Fakultät für Biologie, Universität Konstanz, FRG
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Uetz T, Schneider R, Snozzi M, Egli T. Purification and characterization of a two-component monooxygenase that hydroxylates nitrilotriacetate from "Chelatobacter" strain ATCC 29600. J Bacteriol 1992; 174:1179-88. [PMID: 1735711 PMCID: PMC206410 DOI: 10.1128/jb.174.4.1179-1188.1992] [Citation(s) in RCA: 78] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
An assay based on the consumption of nitrilotriacetate (NTA) was developed to measure the activity of NTA monooxygenase (NTA-Mo) in cell extracts of "Chelatobacter" strain ATCC 29600 and to purify a functional, NTA-hydroxylating enzyme complex. The complex consisted of two components that easily dissociated during purification and upon dilution. Both components were purified to more than 95% homogeneity, and it was possible to reconstitute the functional, NTA-hydroxylating enzyme complex from pure component A (cA) and component B (cB). cB exhibited NTA-stimulated NADH oxidation but was unable to hydroxylate NTA. It had a native molecular mass of 88 kDa and contained flavin mononucleotide (FMN). cA had a native molecular mass of 99 kDa. No catalytic activity has yet been shown for cA alone. Under unfavorable conditions, NADH oxidation was partly or completely uncoupled from hydroxylation, resulting in the formation of H2O2. Optimum hydroxylating activity was found to be dependent on the molar ratio of the two components, the absolute concentration of the enzyme complex, and the presence of FMN. Uncoupling of the reaction was favored in the presence of high salt concentrations and in the presence of flavin adenine dinucleotide. The NTA-Mo complex was sensitive to sulfhydryl reagents, but inhibition was reversible by addition of excess dithiothreitol. The Km values for Mg(2+)-NTA, FMN, and NADH were determined as 0.5 mM, 1.3 microM, and 0.35 mM, respectively. Of 26 tested compounds, NTA was the only substrate for NTA-Mo.
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Affiliation(s)
- T Uetz
- Swiss Federal Institute for Water Resources and Water Pollution Control, Swiss Federal Institutes of Technology, Dübendorf
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