1
|
Montiel EE, Badenhorst D, Lee L, Valenzuela N. Evolution and dosage compensation of nucleolar organizing regions (NORs) mediated by mobile elements in turtles with female (ZZ/ZW) but not with male (XX/XY) heterogamety. J Evol Biol 2022; 35:1709-1720. [PMID: 35877473 PMCID: PMC10087745 DOI: 10.1111/jeb.14064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 04/26/2022] [Accepted: 06/28/2022] [Indexed: 11/28/2022]
Abstract
Understanding the evolution and regulation of nucleolar organizing regions (NORs) is important to elucidate genome structure and function. This is because ribosomal gene (rDNA) copy number and activity mediate protein biosynthesis, stress response, ageing, disease, dosage compensation and genome stability. Here, we found contrasting dosage compensation of sex-linked NORs in turtles with male and female heterogamety. Most taxa examined exhibit homomorphic rRNA gene clusters in a single autosome pair (determined by 28S rDNA fluorescence in situ hybridization), whereas NORs are sex-linked in Apalone spinifera, Pelodiscus sinensis and Staurotypus triporcatus. Full-dosage compensation upregulates the male X-NOR (determined via silver staining-AgNOR) in Staurotypus (who lacks Y-NOR) compared with female X-AgNORs. In softshell Apalone and Pelodiscus, who share homologous ZZ/ZW micro-chromosomes, their enlarged W-NOR is partially active (due to 28S rDNA invasion by R2 retroelements), whereas their smaller Z-NOR is silent in females but active in both male-Zs (presumably because the W-NOR meets cellular demands and excessive NOR activity is costly). We hypothesize that R2 disruption favoured W enlargement to add intact 28S-units, perhaps facilitated by reduced recombination during sex chromosome evolution. The molecular basis of the potentially adaptive female Z-silencing is likely intricate and perhaps epigenetic, as non-ribosomal Z genes are active in Apalone females. Yet, Emydura maquarii exhibit identical heteromorphism in their autosomal NOR (R2 invaded 28S-units and the small-autosome NOR is silent), suggesting that the softshell turtle pattern can evolve independent of sex chromosome evolution. Our study illuminates the complex sex chromosome evolution and dosage compensation of non-model systems that challenges classic paradigms.
Collapse
Affiliation(s)
- Eugenia E Montiel
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA.,Department of Experimental Biology (Genetics Area), University of Jaén, Jaén, Spain
| | - Daleen Badenhorst
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - LingSze Lee
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Nicole Valenzuela
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| |
Collapse
|
2
|
Cholak LR, Haddad CFB, Parise-Maltempi PP. Cytogenetic analysis of the genus Thoropa Cope, 1865 (Anura-Cycloramphidae) with evolutionary inferences based on repetitive sequences. Genet Mol Biol 2020; 43:e20190364. [PMID: 32648889 PMCID: PMC7344750 DOI: 10.1590/1678-4685-gmb-2019-0364] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 06/06/2020] [Indexed: 11/30/2022] Open
Abstract
Cytogenetics can be a useful tool to assist in taxonomic problems by adding
information to the widely used morphological and molecular approaches. These
taxonomic problems are especially common in anurans, once they are very diverse,
highly polymorphic, and present many cryptic species. The genus
Thoropa Cope, 1865 is composed of six specialist species
that reproduce in rocky outcrops and are distributed throughout the Atlantic
Forest and Cerrado ecotones. Phylogenetic studies point to possible cryptic
species within the T. miliaris group. To assist in the
evolutionary and taxonomic understanding of this group, classical cytogenetic
techniques were used to find possible molecular markers for the genus through
rDNA5S, rDNA18S, and U2snDNA probes and analyze their chromosome distribution in
the group of T. miliaris. Despite the well conserved karyotype
under conventional staining and classical techniques, such as Ag-NOR, our
C-banding results showed differences in the centromeric heterochromatin
concentration between two populations of T. miliaris.
Furthermore, some differences among the populations and species were found for
rDNA5S and U2snDNA. This study contributes to a better understanding of the
evolutionary relationships within the genus; however, the use of different probe
sequences, such as satDNA, is essential for a more robust cytogenetic
analysis.
Collapse
Affiliation(s)
- Luiza Rieder Cholak
- Universidade Estadual Paulista (UNESP), Instituto de Biociências, Programa de Pós-graduação em Biologia Celular e Molecular, Rio Claro, SP, Brazil.,Universidade Estadual Paulista (UNESP), Instituto de Biociências, Laboratório de Citogenética Animal, Departamento de Biologia Geral e Aplicada, Rio Claro, SP, Brazil
| | - Célio F B Haddad
- Universidade Estadual Paulista (UNESP), Instituto de Biociências, Laboratório de Herpetologia, Departmento de Biodiversidade e Centro de Aquacultura (CAUNESP), Rio Claro, SP, Brazil
| | - Patrícia P Parise-Maltempi
- Universidade Estadual Paulista (UNESP), Instituto de Biociências, Programa de Pós-graduação em Biologia Celular e Molecular, Rio Claro, SP, Brazil.,Universidade Estadual Paulista (UNESP), Instituto de Biociências, Laboratório de Citogenética Animal, Departamento de Biologia Geral e Aplicada, Rio Claro, SP, Brazil
| |
Collapse
|
3
|
Zaleśna A, Florek M, Rybacki M, Ogielska M. Variability of NOR patterns in European water frogs of different genome composition and ploidy level. COMPARATIVE CYTOGENETICS 2017; 11:249-266. [PMID: 28919963 PMCID: PMC5596979 DOI: 10.3897/compcytogen.v11i2.10804] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 02/14/2017] [Indexed: 05/28/2023]
Abstract
We studied water frogs from a complex composed of two species: Pelophylax lessonae (Camerano, 1882) (genome LL, 2n = 26) and P. ridibundus (Pallas, 1771) (RR, 2 = 26), and their natural hybrid P. esculentus (Fitzinger, 1843) of various ploidy and genome composition (RL, 2n = 26, and RRL or RLL, 3n = 39). Tetraploids RRLL were found (4n = 52) in juveniles. We applied cytogenetic techniques: AgNO3, chromomycin A3, PI and fluorescent in situ hybridization with a 28S rDNA probe. Results obtained by silver staining corresponded well with those stained with CMA3, PI and FISH. As a rule, NORs are situated on chromosomes 10. The number of Ag-NORs visible on metaphase plates was the same as the number of Ag-nucleoli present in interphase nuclei of the same individual. In all analyzed metaphases, NORs exhibited variations in size after AgNO3 and CMA3 stainings. Sixty-six individuals (out of 407 analyzed) were polymorphic for the localization and number of NORs. Fifty-one diploids had NORs only on one chromosome of pair 10. Three triploids (LLR and RRL) displayed two NORs, and two other triploid RRL individuals displayed one, instead of expected three NORs. In ten individuals extra NORs were detected on chromosomes other than 10 (chromosomes 2 and 9).
Collapse
Affiliation(s)
- Anna Zaleśna
- Department of Evolutionary Biology and Conservation of Vertebrates, Institute of Environmental Biology, University of Wrocław, Poland
| | - Maria Florek
- Department of Evolutionary Biology and Conservation of Vertebrates, Institute of Environmental Biology, University of Wrocław, Poland
| | - Mariusz Rybacki
- Department of Zoology, Kazimierz Wielki University, Al. Ossolińskich 12, 85–067, Poland
| | - Maria Ogielska
- Department of Evolutionary Biology and Conservation of Vertebrates, Institute of Environmental Biology, University of Wrocław, Poland
| |
Collapse
|
4
|
Peixoto MAA, Oliveira MPC, Feio RN, Dergam JA. Karyological study of Ololygon tripui (Lourenço, Nascimento and Pires, 2009), (Anura, Hylidae) with comments on chromosomal traits among populations. COMPARATIVE CYTOGENETICS 2016; 10:505-516. [PMID: 28123674 PMCID: PMC5240505 DOI: 10.3897/compcytogen.v10i4.9176] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 07/30/2016] [Indexed: 06/06/2023]
Abstract
To increase the number of cytogenetic characters used in Ololygon tripui systematics, we applied some cytogenetic techniques such as Giemsa, C- and NOR-banding, and fluorescence in situ hybridization (FISH) with 18S rDNA and repetitive microsatellite DNA probes to the study of four populations from Minas Gerais State (southeastern Brazil). All populations showed 2n = 24 and FN = 48, and chromosomal formula 8m + 10sm + 6st. Nucleolar organizing regions (NORs) were located on chromosome pair 6 in all populations, although in the Tripuí locality additional markings were observed on one homologue of chromosome pair 3. These patterns were partially congruent with results obtained using the 18S rDNA FISH probe. The microsatellites repetitive DNA (GA)15 and (CAT)10 probes accumulated predominantly in the terminal region of all chromosomes. Chromosome morphology and Ag-NOR were conserved among populations, a conserved pattern in Ololygon Fitzinger, 1843. Repetitive DNA FISH probes patterns were similar among populations, but they revealed species-specific differences when compared with other species of the genus Ololygon, suggesting that molecular cytogenetics are potentially more informative in karyologically conservative taxa.
Collapse
Affiliation(s)
- Marco Antônio A. Peixoto
- Laboratório de Sistemática Molecular - Beagle, Departamento de Biologia Animal, Universidade Federal de Viçosa, CEP 36570-900, Viçosa, Minas Gerais State, Brazil
- Museu de Zoologia João Moojen - MZUFV, Departamento de Biologia Animal, Universidade Federal de Viçosa, CEP 36570-900, Viçosa, Minas Gerais State, Brazil
| | - Marina P. C. Oliveira
- Laboratório de Sistemática Molecular - Beagle, Departamento de Biologia Animal, Universidade Federal de Viçosa, CEP 36570-900, Viçosa, Minas Gerais State, Brazil
| | - Renato N. Feio
- Museu de Zoologia João Moojen - MZUFV, Departamento de Biologia Animal, Universidade Federal de Viçosa, CEP 36570-900, Viçosa, Minas Gerais State, Brazil
| | - Jorge A. Dergam
- Laboratório de Sistemática Molecular - Beagle, Departamento de Biologia Animal, Universidade Federal de Viçosa, CEP 36570-900, Viçosa, Minas Gerais State, Brazil
| |
Collapse
|
5
|
Montiel EE, Badenhorst D, Lee LS, Literman R, Trifonov V, Valenzuela N. Cytogenetic Insights into the Evolution of Chromosomes and Sex Determination Reveal Striking Homology of Turtle Sex Chromosomes to Amphibian Autosomes. Cytogenet Genome Res 2016; 148:292-304. [DOI: 10.1159/000447478] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/04/2016] [Indexed: 11/19/2022] Open
Abstract
Turtle karyotypes are highly conserved compared to other vertebrates; yet, variation in diploid number (2n = 26-68) reflects profound genomic reorganization, which correlates with evolutionary turnovers in sex determination. We evaluate the published literature and newly collected comparative cytogenetic data (G- and C-banding, 18S-NOR, and telomere-FISH mapping) from 13 species spanning 2n = 28-68 to revisit turtle genome evolution and sex determination. Interstitial telomeric sites were detected in multiple lineages that underwent diploid number and sex determination turnovers, suggesting chromosomal rearrangements. C-banding revealed potential interspecific variation in centromere composition and interstitial heterochromatin at secondary constrictions. 18S-NORs were detected in secondary constrictions in a single chromosomal pair per species, refuting previous reports of multiple NORs in turtles. 18S-NORs are linked to ZW chromosomes in Apalone and Pelodiscus and to X (not Y) in Staurotypus. Notably, comparative genomics across amniotes revealed that the sex chromosomes of several turtles, as well as mammals and some lizards, are homologous to components of Xenopus tropicalis XTR1 (carrying Dmrt1). Other turtle sex chromosomes are homologous to XTR4 (carrying Wt1). Interestingly, all known turtle sex chromosomes, except in Trionychidae, evolved via inversions around Dmrt1 or Wt1. Thus, XTR1 appears to represent an amniote proto-sex chromosome (perhaps linked ancestrally to XTR4) that gave rise to turtle and other amniote sex chromosomes.
Collapse
|
6
|
Comparative cytogenetic analysis of four species of Dendropsophus (Hylinae) from the Brazilian Atlantic forest. J Genet 2016; 95:349-55. [PMID: 27350679 DOI: 10.1007/s12041-016-0645-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
We conducted a cytogenetic study of four hyline frog species (Dendropsophus elegans, D. microps, D. minutus and D. werneri) from southern Brazil. All species had 2n = 30 chromosomes, with interspecific and intraspecific variation in the numbers of metacentric, submetacentric, subtelocentric and telocentric chromosomes. C-banding and fluorochrome staining revealed conservative GC-rich heterochromatin localized in the pericentromeric regions of all species. The location of the nucleolus organizer regions, as confirmed by fluorescent in situ hybridization, differed between species. Telomeric probes detected sites that were restricted to the terminal regions of all chromosomes and no interstitial or centromeric signals were observed. Our study corroborates the generic synapomorphy of 2n = 30 chromosomes for Dendropsophus and adds data that may become useful for future taxonomic revisions and a broader understanding of chromosomal evolution among hylids.
Collapse
|
7
|
Campos KA, Fontanetti CS. Comparative cytogenetics in different populations of the cavernicolous diplopod Pseudonannolene strinatii (Diplopoda, Pseudonannolenidae). IHERINGIA. SERIE ZOOLOGIA 2013. [DOI: 10.1590/s0073-47212013000100006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Different populations of Pseudonannolene strinatii Mauriès, 1974 collected from three caves in Iporanga, state of São Paulo, were cytogenetically compared using techniques of conventional coloration, C-banding and silver nitrate impregnation. Specimens were morphologically similar and small cytogenetic differences were observed between the populations with relation to the distribution of constitutive heterochromatin.
Collapse
|
8
|
Qing L, Xia Y, Zheng Y, Zeng X. FISH of 5S rDNA and telomeric (TTAGGG) n repeats in normal and translocated populations of the frog Quasipaa boulengeri (Anura, Ranidae). ACTA ACUST UNITED AC 2013. [DOI: 10.1007/s11434-013-5690-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
9
|
Gruber SL, Zina J, Narimatsu H, Haddad CFB, Kasahara S. Comparative karyotype analysis and chromosome evolution in the genus Aplastodiscus (Cophomantini, Hylinae, Hylidae). BMC Genet 2012; 13:28. [PMID: 22520864 PMCID: PMC3465196 DOI: 10.1186/1471-2156-13-28] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Accepted: 04/15/2012] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The frogs of the Tribe Cophomantini present, in general, 2n = 24 karyotype, but data on Aplastodiscus showed variation in diploid number from 2n = 24 to 2n = 18. Five species were karyotyped, one of them for the first time, using conventional and molecular cytogenetic techniques, with the aim to perform a comprehensive comparative analysis towards the understanding of chromosome evolution in light of the phylogeny. RESULTS Aplastodiscus perviridis showed 2n = 24, A. arildae and A. eugenioi, 2n = 22, A. callipygius, 2n = 20, and A. leucopygius, 2n = 18. In the metaphase I cells of two species only bivalents occurred, whereas in A. arildae, A. callipygius, and A. leucopygius one tetravalent was also observed besides the bivalents. BrdU incorporation produced replication bands especially in the largest chromosomes, and a relatively good banding correspondence was noticed among some of them. Silver impregnation and FISH with an rDNA probe identified a single NOR pair: the 11 in A. perviridis and A. arildae; the 6 in A. eugenioi; and the 9 in A. callipygius and A. leucopygius. C-banding showed a predominantly centromeric distribution of the heterochromatin, and in one of the species distinct molecular composition was revealed by CMA3. The telomeric probe hybridised all chromosome ends and additionally disclosed the presence of telomere-like sequences in centromeric regions of three species. CONCLUSIONS Based on the hypothesis of 2n = 24 ancestral karyotype for Aplastodiscus, and considering the karyotype differences and similarities, two evolutionary pathways through fusion events were suggested. One of them corresponded to the reduction of 2n = 24 to 22, and the other, the reduction of 2n = 24 to 20, and subsequently to 18. Regarding the NOR, two conditions were recognised: plesiomorphy, represented by the homeologous small-sized NOR-bearing pairs, and derivation, represented by the NOR in a medium-sized pair. In spite of the apparent uniformity of C-banding patterns, heterogeneity in the molecular composition of some repetitive regions was revealed by CMA3 staining and by interstitial telomeric labelling. The meiotic tetravalent might be due to minute reciprocal translocations or to non-chiasmatic ectopic pairing between terminal repetitive sequences. The comparative cytogenetic analysis allowed to outline the chromosome evolution and contributed to enlighten the relationships within the genus Aplastodiscus.
Collapse
Affiliation(s)
- Simone Lilian Gruber
- UNESP, Universidade Estadual Paulista, Instituto de Biociências, Departamento de Biologia, Av, 24A, 1515, 13506-900, Rio Claro, SP, Brazil.
| | | | | | | | | |
Collapse
|
10
|
Conserved Karyotypes in Cophomantini: Cytogenetic Analysis of 12 Species from 3 Species Groups of Bokermannohyla (Amphibia: Anura: Hylidae). J HERPETOL 2011. [DOI: 10.1670/09-249.1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
11
|
Paiva CR, Nascimento J, Silva APZ, Bernarde PS, Ananias F. Karyotypes and Ag‐NORs inPhyllomedusa cambaDe La Riva, 1999 andP. rhodeiMertens, 1926 (Anura, Hylidae, Phyllomedusinae): cytotaxonomic considerations. ACTA ACUST UNITED AC 2010. [DOI: 10.1080/11250000903187585] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
12
|
Z and W sex chromosomes in the cane toad (Bufo marinus). Chromosome Res 2009; 17:1015-24. [DOI: 10.1007/s10577-009-9095-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2009] [Accepted: 10/25/2009] [Indexed: 10/20/2022]
|
13
|
Siqueira S, Aguiar O, Pansonato A, Giaretta AA, Strüssmann C, Martins I, Recco-Pimentel SM. The karyotype of three Brazilian Terrarana frogs (Amphibia, Anura) with evidence of a new Barycholos species. Genet Mol Biol 2009; 32:470-6. [PMID: 21637508 PMCID: PMC3036057 DOI: 10.1590/s1415-47572009005000044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2008] [Accepted: 10/16/2008] [Indexed: 11/29/2022] Open
Abstract
A recent substantial rearrangement of the 882 described eleutherodactyline frog species has considerably improved the understanding of their systematics. Nevertheless, many taxonomic aspects of the South American eleutherodactyline species remain unknown and require further investigation using morphological, cytogenetic and molecular approaches. In this work, the karyotypes of the Brazilian species Ischnocnema juipoca (Atibaia and Campos do Jordão, SP), Barycholos cf. ternetzi (Uberlândia, MG, and Porto Nacional, TO), and Pristimantis crepitans (Chapada dos Guimarães and São Vicente, MT) were analyzed using Giemsa staining, Ag-NOR labeling, and C-banding techniques. All individuals had a diploid number of 22 chromosomes, but the Fundamental Numbers were different among species. The herein described low chromosome number of Pristimantis crepitans is unique within this genus, suggesting that cytogenetically this species is not closely related either to its congeneric species or to Ischnocnema. In addition, karyotype differences, mainly in the NOR position, clearly distinguished the two Barycholos populations, besides indicating the existence of a so far undescribed species in this genus. A taxonomic review could clarify the systematic position of P. crepitans and verify the hypothetic new Barycholos species.
Collapse
Affiliation(s)
- Sérgio Siqueira
- Departamento de Biologia Celular, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP Brazil
| | | | | | | | | | | | | |
Collapse
|
14
|
Cytogenetic characterization and AFLP-based genetic linkage mapping for the butterfly Bicyclus anynana, covering all 28 karyotyped chromosomes. PLoS One 2008; 3:e3882. [PMID: 19060955 PMCID: PMC2588656 DOI: 10.1371/journal.pone.0003882] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2008] [Accepted: 11/13/2008] [Indexed: 11/19/2022] Open
Abstract
Background The chromosome characteristics of the butterfly Bicyclus anynana, have received little attention, despite the scientific importance of this species. This study presents the characterization of chromosomes in this species by means of cytogenetic analysis and linkage mapping. Methodology/Principal Findings Physical genomic features in the butterfly B. anynana were examined by karyotype analysis and construction of a linkage map. Lepidoptera possess a female heterogametic W-Z sex chromosome system. The WZ-bivalent in pachytene oocytes of B. anynana consists of an abnormally small, heterochromatic W-chromosome with the Z-chromosome wrapped around it. Accordingly, the W-body in interphase nuclei is much smaller than usual in Lepidoptera. This suggests an intermediate stage in the process of secondary loss of the W-chromosome to a ZZ/Z sex determination system. Two nucleoli are present in the pachytene stage associated with an autosome and the WZ-bivalent respectively. Chromosome counts confirmed a haploid number of n = 28. Linkage mapping had to take account of absence of crossing-over in females, and of our use of a full-sib crossing design. We developed a new method to determine and exclude the non-recombinant uninformative female inherited component in offspring. The linkage map was constructed using a novel approach that uses exclusively JOINMAP-software for Lepidoptera linkage mapping. This approach simplifies the mapping procedure, avoids over-estimation of mapping distance and increases the reliability of relative marker positions. A total of 347 AFLP markers, 9 microsatellites and one single-copy nuclear gene covered all 28 chromosomes, with a mapping distance of 1354 cM. Conserved synteny of Tpi on the Z-chromosome in Lepidoptera was confirmed for B. anynana. The results are discussed in relation to other mapping studies in Lepidoptera. Conclusions/Significance This study adds to the knowledge of chromosome structure and evolution of an intensively studied organism. On a broader scale it provides an insight in Lepidoptera sex chromosome evolution and it proposes a simpler and more reliable method of linkage mapping than used for Lepidoptera to date.
Collapse
|
15
|
de Godoy JAP, Pierozzi PHB, Fontanetti CS. Cytogenetics of four species of Spirostreptidae (Diplopoda, Spirostreptida). Micron 2008; 39:1371-80. [PMID: 18342520 DOI: 10.1016/j.micron.2008.01.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2007] [Revised: 01/25/2008] [Accepted: 01/31/2008] [Indexed: 11/16/2022]
Abstract
Considering an estimated number of millipedes of approximately 80,000, cytogenetic studies on these animals are rare, as only a total of 70 species have their karyotypes described. The present study reports on the chromosomal number of four Brazilian diplopods of the family Spirostreptidae: Urostreptus atrobrunneus with 2n=24, XY; Gymnostreptus olivaceus 2n=12, XY and Alloporus araraquarensis and A. principes, 2n=18, XY. The C-banding pattern and NOR staining of U. atrobrunneus, G. olivaceus and A. araraquarensis are described.
Collapse
Affiliation(s)
- Juliana Aparecida Preto de Godoy
- Department of Biology, São Paulo State University (UNESP), Bioscience Institute (IB), Av. 24A, No. 1515, Bela Vista, 13506-900 Rio Claro, São Paulo, Brazil
| | | | | |
Collapse
|
16
|
Cuevas CC, Formas JR. Cytogenetics ofBatrachylaspecies (Anura: Neobatrachia: Ceratophryidae) of southern South America, with phylogenetics comments. NEW ZEALAND JOURNAL OF ZOOLOGY 2008. [DOI: 10.1080/03014220809510114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
17
|
Ananias F, Modesto ADS, Mendes SC, Napoli MF. Unusual primitive heteromorphic ZZ/ZW sex chromosomes in Proceratophrys boiei (Anura, Cycloramphidae, Alsodinae), with description of C-Band interpopulational polymorphism. Hereditas 2007; 144:206-12. [PMID: 18031355 DOI: 10.1111/j.2007.0018-0661.02026.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
We performed cytogenetic analyses on specimens from three population samples of Proceratophrys boiei from southeastern and northeastern Brazil. We stained chromosomes of mitotic and meiotic cells with Giemsa, C-banding and Ag-NOR methods. All specimens of P. boiei presented a karyotype with a full chromosome complement of 2n=22, metacentric and submetacentric. We observed the secondary constriction within the short arm of pair 8, which was in the same position of the nucleolus organizer region (NOR). NOR heteromorphism was observed within two specimens from the municipality of Mata de São João (northeastern Bahia State). The C-banding evidenced an unusual heterochromatic pattern in the genome of P. boiei. In the southern most population samples (São Paulo State), we observed large blocks of heterochromatin in the centromeric regions of all chromosomes, whereas the northernmost samples (Bahia State) presented a small amount of constitutive heterochromatin. We suppose that this geographic variation in heterochromatin quantities could be due to heterochromatinization of some chromosome regions in the genome of the São Paulo samples. Furthermore, females from São Paulo presented, within chromosome pair 1 from C-banded karyotypes, one homologous chromosome almost heterochromatic, whereas males had heterochromatin restricted to the centromeric region. This unusual heterochromatic arrangement led us to assume that P. boiei owns a ZZ/ZW type of sexual determination system. This finding is very important, as this is the first record of ZZ/ZW sex chromosomes within Cycloramphidae. We believe that the cytogenetic differences found between southeastern and northeastern Brazilian population samples of P. boiei strongly supports the existence of a species complex under the name P. boiei, and the requirement of taxonomic and systematic reviews by morphological, bioacoustical, molecular, and cytogenetic data could define this taxonomic issue in the future.
Collapse
Affiliation(s)
- Fernando Ananias
- Curso de Ciências Biológicas, Universidade São Francisco (USF), Bragança Paulista, São Paulo, Brazil.
| | | | | | | |
Collapse
|
18
|
Almeida MCD, Campaner C, Cella DM. Karyotype characterization, constitutive heterochromatin and nucleolus organizer regions of Paranaita opima (Coleoptera, Chrysomelidae, Alticinae). Genet Mol Biol 2006. [DOI: 10.1590/s1415-47572006000300013] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
|
19
|
Veiga-Menoncello ACP, Lima AP, Recco-Pimentel SM. Cytogenetic analysis of four central Amazonian species of Colostethus (Anura - Dendrobatidae) with a diploid complement of 22 chromosomes. Hereditas 2004; 139:189-98. [PMID: 15061800 DOI: 10.1111/j.1601-5223.2003.01805.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Colostethus marchesianus from the type locality and three related species had 2n = 22 chromosomes, which differed from most other Colostethus species that have 2n = 24 chromosomes. The species analyzed were morphologically similar and showed a conservative karyotype, although they could be distinguished from each other by their C-banding pattern. Additional NOR sites, heteromorphism in NOR size and heterochromatin, and an additional rDNA site detected by FISH, were observed. These data suggest that chromosomal rearrangements and hetrochromatin-related events may have contributed to the karyotype differentiation of these Colostethus.
Collapse
|
20
|
Mellink CH, Bosma AA, De Haan NA. Variation in size of Ag-NORs and fluorescent rDNA in situ hybridization signals in six breeds of domestic pig. Hereditas 2004; 120:141-9. [PMID: 8083060 DOI: 10.1111/j.1601-5223.1994.00141.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Variation of the size of silver-stained nucleolar organizer regions (NORs) of chromosomes 10 and 8 was studied in pigs of six breeds (Sus scrofa L.). The silver deposits were quantified by image analysis and the results were normalized for each Ag-NOR chromosome. In general, normalized values for chromosomes 10 were higher than those for chromosomes 8, suggesting that the NOR activity of chromosomes 10 is dominant as compared to that of chromosomes 8. However, high values for chromosomes 8 were found in the Meishan breed and in some Piétrain pigs, indicating a high transcriptional activity of the rRNA genes on these chromosomes. In some pigs, the relative quantities of rDNA in chromosomes 10 and 8 were investigated by fluorescent in situ hybridization and the results were compared with those of the silver staining procedure. It is concluded that Ag-NOR sizes on chromosomes 10 are relatively well correlated to the number of rRNA genes, whereas the absence or the small size of Ag-NORs on chromosomes 8, often observed in pigs, is the result of low NOR activity rather than of absence of rDNA.
Collapse
Affiliation(s)
- C H Mellink
- Department of Cell Biology and Histology, Faculty of Veterinary Medicine, Utrecht University, The Netherlands
| | | | | |
Collapse
|
21
|
Campos KA, Fontanetti CS. Chromosomal characterization of Pseudonannolene strinatii (Spirostreptida, Pseudonannolenidae). IHERINGIA. SERIE ZOOLOGIA 2004. [DOI: 10.1590/s0073-47212004000100009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
22
|
Araújo SMSR, Silva CC, Pompolo SG, Perfectti F, Camacho JPM. Genetic load caused by variation in the amount of rDNA in a wasp. Chromosome Res 2003; 10:607-13. [PMID: 12498349 DOI: 10.1023/a:1020970820513] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Extensive variation in the size of the short (heterochromatic) arm of chromosome 14 was found in the wasp Trypoxylon (Trypargilum) albitarse. Ten different variants were differentiated by size and C-banding pattern. Fluorescent in-situ hybridization (FISH) revealed that ribosomal DNA in this species is clustered in the darkly C-banded parts of the heterochromatic short arm of chromosome 14. On this basis, we got an indirect estimate of the amount of rDNA from the area of these dark C-bands. The significant absence in males of the three chromosome variants with lower amounts of rDNA indicates that these three variants are lethal in this sex, and suggests the existence of a threshold marking the minimum amount of rDNA which is tolerable in haploidy. This implies about 4% genetic load in the population caused by variation in rDNA amount.
Collapse
Affiliation(s)
- S M S R Araújo
- Departamento de Biologia Celular, Universidade Estadual de Campinas , 13083 Campinas, SP, Brazil
| | | | | | | | | |
Collapse
|
23
|
Azevedo MFC, Foresti F, Ramos PRR, Jim J. Comparative cytogenetic studies of Bufo ictericus, B. paracnemis (Amphibia, Anura) and an intermediate form in sympatry. Genet Mol Biol 2003. [DOI: 10.1590/s1415-47572003000300012] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
|
24
|
Lourenço LB, Garcia PC, Recco-Pimentel SM. Cytogenetics of two species of Paratelmatobius (Anura: Leptodactylidae), with phylogenetic comments. Hereditas 2001; 133:201-9. [PMID: 11433964 DOI: 10.1111/j.1601-5223.2000.00201.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
In this paper we provide a cytogenetic analysis of Paratelmatobius cardosoi and Paratelmatobius poecilogaster. The karyotypes of both species showed a diploid number of 24 chromosomes and shared some similarity in the morphology of some pairs. On the other hand, pairs 4 and 6 widely differed between these complements. These karyotypes also differed in their NOR number and location. Size heteromorphism was seen in all NOR-bearing chromosomes of the two karyotypes. In addition, both karyotypes showed small centromeric C-bands and a conspicuous heterochromatic band in the short arm of chromosome 1, although with a different size in each species. The P. cardosoi complement also showed other strongly stained non-centromeric C-bands, with no counterparts in the P. cardosoi karyotype. Chromosome staining with fluorochromes revealed heterogeneity in the base composition of two of the non-centromeric C-bands of P. cardosoi. Comparison of the chromosomal morphology of these Paratelmatobius karyotypes with that of P. lutzii showed that the P. poecilogaster karyotype is more similar to that of P. lutzii than P. cardosoi. These cytogenetic results agree with the proposed species arrangements in the P. cardosoi and P. lutzii groups based on morphological and ecological data.
Collapse
Affiliation(s)
- L B Lourenço
- Departamento de Biologia Celular, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), 13083-970, Campinas, SP, Brasil
| | | | | |
Collapse
|
25
|
Bakkali M, Cabrero J, López-León MD, Perfectti F, Camacho JP. Population differences in the expression of nucleolus organizer regions in the grasshopper Eyprepocnemis plorans. PROTOPLASMA 2001; 217:185-190. [PMID: 11732310 DOI: 10.1007/bf01283399] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Fluorescence in situ hybridization revealed the presence of ribosomal RNA genes in paracentromeric regions of all A chromosomes and in the distal half of B chromosomes in embryonic cells from Moroccan specimens of the grasshopper Eyprepocnemis plorans. The expression of these genes was monitored by the presence of nucleoli attached to each chromosome bivalent in diplotene cells from males collected from two different Moroccan populations and was compared to previous data of Spanish populations. Whereas only the nucleolus organizer regions (NORs) on S9-S11 and X chromosomes were active in the Spanish specimens, Moroccan individuals showed NOR activity in all chromosomes. The rRNA genes on the B chromosome were inactive in both populations. The S9 and S10 NORs were less active in Moroccan specimens than in Spanish specimen, which might be partly explained by the negative inter-dependence for expression of the S10 NOR with respect to those on L2 and X chromosomes. On the other hand, the X NOR was more active in Moroccan specimens than in Spanish specimens, and this might be partly due to the positive effect that the presence of B chromosomes has on the expression of this NOR. The implications of these observations on current models of NOR activity regulation are discussed.
Collapse
Affiliation(s)
- M Bakkali
- Departamento de Genética, Facultad de Ciencias, Universidad de Granada, 18071 Granada, Spain
| | | | | | | | | |
Collapse
|
26
|
Alonso M, Fujiwara A, Yamaha E, Kimura S, Abe S. Ribosomal RNA gene loci and silver-stained nucleolar organizer regions associated with heterochromatin in Alaskan char Salvelinus malma and chum salmon Oncorhynchus keta. Hereditas 2000; 131:221-5. [PMID: 10783532 DOI: 10.1111/j.1601-5223.1999.00221.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Nucleolus-forming 5.8S, 18S and 28S ribosomal RNA gene (rDNA) loci were assigned by fluorescence in situ hybridization (FISH) to the distal half of the short arms of a large-sized submetacentric pair in the Alaskan char (Salvelinus malma) and to the distal region of the long arms of a medium-sized submetacentric pair in the chum salmon (Oncorhynchus keta), respectively. In each species, heteromorphic FISH signals, spanning whole satellite region and secondary constriction, imply an intraspecific variation in the size of rDNA loci. Size variation of silver-stained nucleolar organizer regions (AgNORs) was also apparent between or within the assigned rDNA loci in each species, suggesting a possible inter- or intralocus inactivation of rDNAs. C-band positivity of assigned rDNA loci and AgNORs unequivocally showed their association with heterochromatin in these species.
Collapse
Affiliation(s)
- M Alonso
- Laboratory of Cytogenetics, Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Japan
| | | | | | | | | |
Collapse
|
27
|
Lourenço LB, Recco-Pimentel SM, Cardoso AJ. Polymorphism of the nucleolus organizer regions (NORs) in Physalaemus petersi (Amphibia, Anura, Leptodactylidae) detected by silver staining and fluorescence in situ hybridization. Chromosome Res 1998; 6:621-8. [PMID: 10099875 DOI: 10.1023/a:1009253410553] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The nucleolus organizer regions (NORs) of both karyotypes I and II of Physalaemus petersi (Jiménez de la Espada, 1872) from the Brazilian Amazon were studied by Giemsa staining, and by the Ag-NOR method. Karyological group I specimens were also studied by the fluorescence in situ hybridization (FISH) technique. Multiple NOR-bearing chromosomes were detected in both karyotypes. The coincident results of the Ag-NOR and FISH methods rule out the occurrence of silent NORs in this anuran. There was no intraindividual NOR variability in either group, but interindividual variability of NORs was high in group I. Seven different patterns of active NOR distribution were definitely recognized among fifteen specimens. This was considered to be a NOR site polymorphism. These results, combined with the C-band polymorphism previously reported for P. petersi, demonstrate a high rate of chromosome evolution in this group.
Collapse
Affiliation(s)
- L B Lourenço
- Department of Cell Biology, Biology Institute, Campinas, SP, Brazil
| | | | | |
Collapse
|
28
|
Insua A, Méndez J. Physical mapping and activity of ribosomal RNA genes in mussel Mytilus galloprovincialis. Hereditas 1998; 128:189-94. [PMID: 9760868 DOI: 10.1111/j.1601-5223.1998.00189.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
In bivalve molluscs, NOR analysis was carried out by silver staining, and extensive intra- and interindividual differences in the apparent number of NORs were reported. In this work, we determine the physical mapping of 18S and 28S ribosomal genes of the mussel M. galloprovincialis by fluorescence in situ hybridization (FISH). We also apply silver staining to the same individuals in order to determine if structural changes are involved in the heteromorphism detected by this technique. Our results show that rDNA loci map on the telomeric region of the long arm of two submetacentric-subtelocentric chromosome pairs. In addition to variations in NOR expression, we found some cases of structural variations that affect the number of rDNA loci between individuals and the location of the rDNA locus between the cells of the individual. We suggest that FISH should be applied to other bivalves to assess the variation of rDNA loci and undertake more accurate interspecific comparisons.
Collapse
Affiliation(s)
- A Insua
- Departamento de Biología Celular y Molecular, Universidad de A Coruña, Spain
| | | |
Collapse
|
29
|
Delany ME, Emsley A, Smiley MB, Putnam JR, Bloom SE. Nucleolar size polymorphisms in commercial layer chickens; determination of incidence, inheritance, and nucleolar sizes. Poult Sci 1994; 73:1211-7. [PMID: 7971662 DOI: 10.3382/ps.0731211] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
In the chicken, one chromosome pair encodes the ribosomal (r)RNA genes and two nucleoli are formed in interphase cells. The nucleolus is the site of rRNA synthesis and ribosome biogenesis. Nucleolar size polymorphisms have been detected in research strains of chickens and found to represent heterozygosity for rRNA gene copy number. The objectives of the present study were to determine whether nucleolar size polymorphisms exist in commercial chicken flocks and whether such polymorphisms are under genetic control. The occurrence of nucleolar size polymorphisms was studied in three lines of commercial layer chickens (designated A, B, and C). Nucleolar size polymorphisms were found in all three lines. However, the lines differed in the proportion of individuals exhibiting the polymorphic phenotype of two unequal-sized nucleoli (2P). The 2P phenotype, determined in successive years, was found in 10 to 14% of Line A birds, 18 to 23% of Line B birds, and 41 to 63% of Line C birds. The inheritance pattern of the nucleolar size polymorphism and nucleoli sizes were studied in Line C birds. The 2P phenotype was found to be inherited in Mendelian fashion. The large nucleolus was 1.7x and 1.6x that of the smaller nucleolus in 2P males and females, respectively, and was larger than the nucleoli of 2E birds (2E = nonpolymorphic phenotype of two equal-sized nucleoli). Total nucleolar size was greater in cells of 2P birds than in cells of 2E birds. These data suggest that the genetic basis for the large nucleolus in Line C 2P cells is a "larger than normal" rDNA cluster.
Collapse
Affiliation(s)
- M E Delany
- Department of Avian and Aquatic Animal Medicine, Cornell University, Ithaca, New York 14853
| | | | | | | | | |
Collapse
|
30
|
Hirai H, Yamamoto MT, Ogura K, Satta Y, Yamada M, Taylor RW, Imai HT. Multiplication of 28S rDNA and NOR activity in chromosome evolution among ants of the Myrmecia pilosula species complex. Chromosoma 1994; 103:171-8. [PMID: 7924619 DOI: 10.1007/bf00368009] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Chromosomal localization of rDNA in samples of five taxa of the Mymecia pilosula species complex (Hymenoptera: Formicidae: Myrmeciinae) with 2n = 3 (M. croslandi), 8 (M. imaii), 10 (M. banksi), 18 (M. haskinsorum), and 27 (M. pilosula) was carried out by fluorescence in situ hybridization (FISH) using cloned M. croslandi rDNA (pMc.r2) including the coding region for 28S rRNA. Results show that (1) the 28S rDNA in the genome of these ants is repetitive and is localized in pericentromeric C-bands, (2) the number of chromosomes carrying rDNA is two in M. croslandi, M. imaii and M. banksi, six in M. haskinsorum and ten in M. pilosula, and (3) only one or two clusters of rRNA genes generate nucleoli in each species. We suggest that the rDNA in the ancestral stock of the M. pilosula complex was localized originally in a pericentromeric C-band, and multiplied by chance with time during saltatory increases in C-banding following episodes of centric fission. Most rDNA multiplied on various chromosomes seems to be inactivated and eliminated from the genome, together with C-bands, by AM-inversion or centric fusion, with the remnant rDNAs dispersed in the genome by centric fission and AM-inversion.
Collapse
Affiliation(s)
- H Hirai
- Primate Research Institute, Kyoto University, Aichi-ken, Japan
| | | | | | | | | | | | | |
Collapse
|
31
|
Pendás AM, Morán P, Garciía-Vázquez E. Multi-chromosomal location of ribosomal RNA genes and heterochromatin association in brown trout. Chromosome Res 1993; 1:63-7. [PMID: 8143090 DOI: 10.1007/bf00710608] [Citation(s) in RCA: 93] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The ribosomal rRNA genes have been mapped by fluorescent in situ hybridization (FISH) to brown trout chromosomes. One major NOR chromosome pair and 8 novel minor NOR chromosome pairs have been found. Both major and minor NORs were closely related to polymorphic heterochromatin, as revealed by FISH and C-banding. These results are discussed with respect to NOR expression, the relationship between rDNA and heterochromatin, and evolutionary aspects.
Collapse
Affiliation(s)
- A M Pendás
- Departmento de Biologia Funcional, Area de Genetica, Facultad de Medicina, Universidad de Oviedo, Spain
| | | | | |
Collapse
|
32
|
Murray BG, Bennett MD, Hammett KRW. Secondary constrictions and NORs of of Lathyrus investigated by silver staining and in-situ hybridization. Heredity (Edinb) 1992. [DOI: 10.1038/hdy.1992.68] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
|