Controls of the microbial loop: Nutrient limitation and enzyme production, location and control

Temperature and nutrient effects on Campylobacter jejuni attachment on multispecies biofilms on stainless steel

Campylobacterjejuni is a thermophilic microaerophilic pathogen that is commonly found in the intestinal tract of chickens. In this study, attachment of C. jejuni 1221gfp in biofilms on stainless steel was assessed at various temperatures and with reduced nutrients. Bacteria collected from a saline rinse of processed broiler chicken carcasses were used to form initial biofilms. The whole carcass rinse (WCR) biofilms were formed by incubation of the bacteria for 16 h at 13, 20, 37, and 42 degrees C on stainless steel coupons in tryptic soy broth (TSB). The resulting biofilms were stained with Hoechst 33258 stain and visualized by epifluorescence microscopy. WCR biofilms formed at 13 degrees C yielded the highest surface area coverage (47.6%), and the lowest coverage (2.1%) was attained at 42 degrees C. C. jejuni transformed to produce green fluorescent protein (gfp) was allowed to attach to the preexisting biofilms (from WCR incubated for 16 h) at each of the four temperatures, and attached cells were enumerated by visualization with an epifluorescence microscope. Attachment of C. jejuni 1221gfp did not significantly differ (P > 0.05) among the four temperatures. C. jejuni 1221gfp was cultured only from coupons with biofilms formed at 13 and 20 degrees C. For nutrient limitation experiments, WCR biofilms were allowed to grow in 10- and 50-fold diluted TSB at 20 and 37 degrees C for 48 h. The WCR biofilm surface area coverage (approximately 2%) was greater at 37 degrees C than at 20 degrees C for both TSB concentrations. C. jejuni 1221gfp was incubated with the WCR biofilm for 48 h at 20 and 37 degrees C, and attached cells were enumerated. Attachment was significantly higher (P < 0.05) only for the treatments with 1:10 TSB at 20 degrees C and 1:50 TSB at 37 degrees C. Under reduced-nutrient conditions, C. jejuni 1221gfp was cultured only from biofilms formed at 20 degrees C. Under the conditions tested, the attachment of C. jejuni 1221gfp on stainless steel and biofilms was affected by a combination of temperature and nutrient availability, but C. jejuni culturability was affected solely by temperature.

Regulation and seasonal dynamics of extracellular enzyme activities in the sediments of a large lowland river

We tested whether seasonal changes in the sources of organic substances for microbial metabolism were reflected changes in the activities of five extracellular enzymes in the eighth order lowland River Elbe, Germany. Leucine aminopeptidase showed the highest activities in the water column and the sediments, followed by phosphatase > beta-glucosidase > alpha-glucosidase > exo-1,4-beta-glucanase. Individual enzymes exhibited characteristic seasonal dynamics, as indicated by their relative contribution to cumulative enzyme activity. Leucine aminopeptidase was significantly more active in spring and summer. In contrast, the carbohydrate-degrading enzymes peaked in autumn, and beta-glucosidase activity peaked once again in winter. Thus, in sediments, the ratio of leucine aminopeptidase/beta-glucosidase reached significant higher medians in spring and summer (5-cm depth: ratio 7.7; 20-cm depth: ratio 10.1) than in autumn and winter (5-cm depth: ratio 3.7, 20-cm depth: ratio 6.3). The relative activity of phosphatase in the sediments was seasonally related to both the biomass of planktonic algae as well as to the high content of total particulate phosphorus in autumn and winter. Due to temporal shifts in organic matter supply and changes in the storage capacity of sediments, the seasonal peaks of enzyme activities in sediments exhibited a time lag of 2-3 months compared to that in the water column, along with a significant extension of peak width. Hence, our data show that the seasonal pattern of extracellular enzyme activities provides a sensitive approach to infer seasonal or temporary availability of organic matter in rivers from autochthonous and allochthonous sources. From the dynamics of individual enzyme activities, a consistent synoptic pattern of heterotrophic functioning in the studied river ecosystem could be derived. Our data support the revised riverine productivity model predicting that the metabolism of organic matter in high-order rivers is mainly fuelled by autochthonous production occurring in these reaches and riparian inputs.

Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom

The bacteria associated with oceanic algal blooms are acknowledged to play important roles in carbon, nitrogen, and sulfur cycling, yet little information is available on their identities or phylogenetic affiliations. Three culture-independent methods were used to characterize bacteria from a dimethylsulfoniopropionate (DMSP)-producing algal bloom in the North Atlantic. Group-specific 16S rRNA-targeted oligonucleotides, 16S ribosomal DNA (rDNA) clone libraries, and terminal restriction fragment length polymorphism analysis all indicated that the marine Roseobacter lineage was numerically important in the heterotrophic bacterial community, averaging >20% of the 16S rDNA sampled. Two other groups of heterotrophic bacteria, the SAR86 and SAR11 clades, were also shown by the three 16S rRNA-based methods to be abundant in the bloom community. In surface waters, the Roseobacter, SAR86, and SAR11 lineages together accounted for over 50% of the bacterial rDNA and showed little spatial variability in abundance despite variations in the dominant algal species. Depth profiles indicated that Roseobacter phylotype abundance decreased with depth and was positively correlated with chlorophyll a, DMSP, and total organic sulfur (dimethyl sulfide plus DMSP plus dimethyl sulfoxide) concentrations. Based on these data and previous physiological studies of cultured Roseobacter strains, we hypothesize that this lineage plays a role in cycling organic sulfur compounds produced within the bloom. Three other abundant bacterial phylotypes (representing a cyanobacterium and two members of the alpha Proteobacteria) were primarily associated with chlorophyll-rich surface waters of the bloom (0 to 50 m), while two others (representing Cytophagales and delta Proteobacteria) were primarily found in deeper waters (200 to 500 m).