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Çakmak E, Koc-Bilican B, Avila-Poveda OH, Karaduman T, Cansaran-Duman D, Williams ST, Kaya M. Discovery of protein-based natural hydrogel from the girdle of the 'sea cockroach' Chiton articulatus (Chitonida: Chitonidae). PeerJ 2022; 10:e13386. [PMID: 35573172 PMCID: PMC9097651 DOI: 10.7717/peerj.13386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 04/15/2022] [Indexed: 01/14/2023] Open
Abstract
Hydrogels are widely used materials in biomedical, pharmaceutical, cosmetic, and agricultural fields. However, these hydrogels are usually formed synthetically via a long and complicated process involving crosslinking natural polymers. Herein, we describe a natural hydrogel isolated using a 'gentle' acid treatment from the girdle of a chiton species (Chiton articulatus). This novel hydrogel is shown to have a proliferative effect on mouse fibroblast cells (cell line, L929). The swelling capacity of this natural hydrogel was recorded as approximately 1,200% in distilled water, which is within desired levels for hydrogels. Detailed characterizations reveal that the hydrogel consists predominantly (83.93%) of protein. Considering its non-toxicity, proliferative effect and swelling properties, this natural hydrogel is an important discovery for material sciences, with potential for further applications in industry. Whether the girdle has some hydrogel activity in the living animal is unknown, but we speculate that it may enable the animal to better survive extreme environmental conditions by preventing desiccation.
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Affiliation(s)
- Emel Çakmak
- Vegetable and Animal Production, Güzelyurt Vocational School, Aksaray University, Aksaray, Turkey,Science and Technology Application and Research Center, ASUBTAM - Aksaray University, Aksaray, Turkey
| | - Behlül Koc-Bilican
- Science and Technology Application and Research Center, ASUBTAM - Aksaray University, Aksaray, Turkey,Molecular Biology and Genetics, Faculty of Science and Letters, Aksaray University, Aksaray, Turkey
| | - Omar Hernando Avila-Poveda
- Facultad de Ciencias del Mar, Universidad Autónoma de Sinaloa, Mazatlán, Sinaloa, México,Programa Investigadoras e Investigadores por Mexico, Consejo Nacional de Ciencia y Tecnología, Ciudad de México, México,Proyecto Quitón del Pacífico Tropical Mexicano, Mazatlán, Sinaloa, México
| | - Tuğçe Karaduman
- Science and Technology Application and Research Center, ASUBTAM - Aksaray University, Aksaray, Turkey,Molecular Biology and Genetics, Faculty of Science and Letters, Aksaray University, Aksaray, Turkey
| | | | - Suzanne T. Williams
- Department of Life Sciences, Natural History Museum, London, Cromwell Road, United Kingdom
| | - Murat Kaya
- Science and Technology Application and Research Center, ASUBTAM - Aksaray University, Aksaray, Turkey,Molecular Biology and Genetics, Faculty of Science and Letters, Aksaray University, Aksaray, Turkey
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Clustered brachiopod Hox genes are not expressed collinearly and are associated with lophotrochozoan novelties. Proc Natl Acad Sci U S A 2017; 114:E1913-E1922. [PMID: 28228521 DOI: 10.1073/pnas.1614501114] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Temporal collinearity is often considered the main force preserving Hox gene clusters in animal genomes. Studies that combine genomic and gene expression data are scarce, however, particularly in invertebrates like the Lophotrochozoa. As a result, the temporal collinearity hypothesis is currently built on poorly supported foundations. Here we characterize the complement, cluster, and expression of Hox genes in two brachiopod species, Terebratalia transversa and Novocrania anomalaT. transversa has a split cluster with 10 genes (lab, pb, Hox3, Dfd, Scr, Lox5, Antp, Lox4, Post2, and Post1), whereas N. anomala has 9 genes (apparently missing Post1). Our in situ hybridization, real-time quantitative PCR, and stage-specific transcriptomic analyses show that brachiopod Hox genes are neither strictly temporally nor spatially collinear; only pb (in T. transversa), Hox3 (in both brachiopods), and Dfd (in both brachiopods) show staggered mesodermal expression. Thus, our findings support the idea that temporal collinearity might contribute to keeping Hox genes clustered. Remarkably, expression of the Hox genes in both brachiopod species demonstrates cooption of Hox genes in the chaetae and shell fields, two major lophotrochozoan morphological novelties. The shared and specific expression of Hox genes, together with Arx, Zic, and Notch pathway components in chaetae and shell fields in brachiopods, mollusks, and annelids provide molecular evidence supporting the conservation of the molecular basis for these lophotrochozoan hallmarks.
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Structure, Distribution, and Function of Neuronal/Synaptic Spinules and Related Invaginating Projections. Neuromolecular Med 2015; 17:211-40. [PMID: 26007200 DOI: 10.1007/s12017-015-8358-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Accepted: 05/08/2015] [Indexed: 10/23/2022]
Abstract
Neurons and especially their synapses often project long thin processes that can invaginate neighboring neuronal or glial cells. These "invaginating projections" can occur in almost any combination of postsynaptic, presynaptic, and glial processes. Invaginating projections provide a precise mechanism for one neuron to communicate or exchange material exclusively at a highly localized site on another neuron, e.g., to regulate synaptic plasticity. The best-known types are postsynaptic projections called "spinules" that invaginate into presynaptic terminals. Spinules seem to be most prevalent at large very active synapses. Here, we present a comprehensive review of all kinds of invaginating projections associated with both neurons in general and more specifically with synapses; we describe them in all animals including simple, basal metazoans. These structures may have evolved into more elaborate structures in some higher animal groups exhibiting greater synaptic plasticity. In addition to classic spinules and filopodial invaginations, we describe a variety of lesser-known structures such as amphid microvilli, spinules in giant mossy terminals and en marron/brush synapses, the highly specialized fish retinal spinules, the trophospongium, capitate projections, and fly gnarls, as well as examples in which the entire presynaptic or postsynaptic process is invaginated. These various invaginating projections have evolved to modify the function of a particular synapse, or to channel an effect to one specific synapse or neuron, without affecting those nearby. We discuss how they function in membrane recycling, nourishment, and cell signaling and explore how they might change in aging and disease.
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Borisanova AO, Yushin VV, Malakhov VV, Temereva EN. The fine structure of the cuticle of kamptozoans is similar to that of annelids. ZOOMORPHOLOGY 2015. [DOI: 10.1007/s00435-015-0261-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Chen C, Copley JT, Linse K, Rogers AD, Sigwart J. How the mollusc got its scales: convergent evolution of the molluscan scleritome. Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12462] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Chong Chen
- Department of Zoology; University of Oxford; The Tinbergen Building South Parks Road Oxford OX1 3PS UK
| | - Jonathan T. Copley
- Ocean and Earth Science; University of Southampton; European Way Southampton SO14 3ZH UK
| | - Katrin Linse
- British Antarctic Survey; High Cross Cambridge CB3 0ET UK
| | - Alex D. Rogers
- Department of Zoology; University of Oxford; The Tinbergen Building South Parks Road Oxford OX1 3PS UK
| | - Julia Sigwart
- Queen's University Belfast, Marine Laboratory; Portaferry BT22 1PF Northern Ireland UK
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Sigwart JD, Sumner-Rooney LH, Schwabe E, Heß M, Brennan GP, Schrödl M. A new sensory organ in "primitive" molluscs (Polyplacophora: Lepidopleurida), and its context in the nervous system of chitons. Front Zool 2014; 11:7. [PMID: 24447393 PMCID: PMC3916795 DOI: 10.1186/1742-9994-11-7] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2013] [Accepted: 12/27/2013] [Indexed: 11/10/2022] Open
Abstract
Introduction Chitons (Polyplacophora) are molluscs considered to have a simple nervous system without cephalisation. The position of the class within Mollusca is the topic of extensive debate and neuroanatomical characters can provide new sources of phylogenetic data as well as insights into the fundamental biology of the organisms. We report a new discrete anterior sensory structure in chitons, occurring throughout Lepidopleurida, the order of living chitons that retains plesiomorphic characteristics. Results The novel “Schwabe organ” is clearly visible on living animals as a pair of streaks of brown or purplish pigment on the roof of the pallial cavity, lateral to or partly covered by the mouth lappets. We describe the histology and ultrastructure of the anterior nervous system, including the Schwabe organ, in two lepidopleuran chitons using light and electron microscopy. The oesophageal nerve ring is greatly enlarged and displays ganglionic structure, with the neuropil surrounded by neural somata. The Schwabe organ is innervated by the lateral nerve cord, and dense bundles of nerve fibres running through the Schwabe organ epithelium are frequently surrounded by the pigment granules which characterise the organ. Basal cells projecting to the epithelial surface and cells bearing a large number of ciliary structures may be indicative of sensory function. The Schwabe organ is present in all genera within Lepidopleurida (and absent throughout Chitonida) and represents a novel anatomical synapomorphy of the clade. Conclusions The Schwabe organ is a pigmented sensory organ, found on the ventral surface of deep-sea and shallow water chitons; although its anatomy is well understood, its function remains unknown. The anterior commissure of the chiton oesophagial nerve ring can be considered a brain. Our thorough review of the chiton central nervous system, and particularly the sensory organs of the pallial cavity, provides a context to interpret neuroanatomical homology and assess this new sense organ.
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Affiliation(s)
- Julia D Sigwart
- Queen's University Belfast, Marine Laboratory, 12-13 The Strand, Portaferry, Co, Down BT22 1PF, Northern Ireland.
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Abstract
Unlike true Palaeozoic gastropods, but similar to some coeval hyoliths, the cup-like hemispherical embryonic shell of Aldanella attleborensis (Shaler and Foerste, 1888) from the earliest Cambrian (early Tommotian) Erkeket Formation of northern Siberia bears a mucro. Also, the pattern of mortality, with right-skewed distribution and a peak at about 1.0 mm diameter, is not similar to that of early Palaeozoic gastropods; there is no evidence of metamorphosis that would end the pelagic larval stage of ontogeny. Specimens of larger size are rare in samples of phosphatized “small shelly fossils” but are known in related species of the genus, of up to 3–5 mm diameter. A phosphatized soft body is preserved in a few specimens of A. attleborensis, one bearing possible chaetae of about 5 μm diameter. Such bunches of chaetae arming locomotory organs were earlier identified in the genus Pelagiella Matthew, 1895, a more derived member of the same lineage. It shares with the genus Aldanella Vostokova, 1962 also the mucronate embryonic shell and acicular aragonitic shell wall microstructure. The presence of chaetae-bearing organs suggests pelagic mode of life of pelagiellids at maturity. Middle Cambrian Pelagiella shells reached 7 mm in diameter, suggesting evolutionary increase in mature size. Embryonic shell morphology, wall microstructure, and the presence of locomotory organs with a fan of chaetae contradicts gastropod, and even conchiferan affinity of the pelagiellids, but together with the pattern of ontogeny conforms to the enigmatic Palaeozoic hyoliths. They differ in having opercula closing the shell apertures and in lacking evidence of chaetae. The helens, paired apertural appendages of possible locomotory function occurring in apertures of some of them, do not reveal any similarity to chaetae in their development. We propose classifying the order Pelagiellida in the class Hyolitha rather than in the class Gastropoda, until its phylogenetic position is clarified. Such understood hyoliths may represent the earliest stage in evolution of molluscs, immediately following initial diversification of the spiralians (lophotrochozoans) into phyla.
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Affiliation(s)
- Jerzy Dzik
- Instytut Paleobiologii PAN, Twarda 51/55, 00-818 Warszawa, and Zakład Paleobiologii i Ewolucji Uniwersytetu Warszawskiego, Miecznikowa 1, 02-089 Warszawa, Poland
- Instytut Paleobiologii PAN, Twarda 51/55, 00-818 Warszawa, Poland
| | - Dawid Mazurek
- Instytut Paleobiologii PAN, Twarda 51/55, 00-818 Warszawa, and Zakład Paleobiologii i Ewolucji Uniwersytetu Warszawskiego, Miecznikowa 1, 02-089 Warszawa, Poland
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Abstract
The advent of numerical methods for analysing phylogenetic relationships, along with the study of morphology and molecular data, has driven our understanding of animal relationships for the past three decades. Within the protostome branch of the animal tree of life, these data have sufficed to establish its two main side branches, the moulting Ecdysozoa and the non-moulting Lophotrochozoa. In this review, I explore our current knowledge of protostome relationships and discuss progress and future perspectives and strategies to increase resolution within the main lophotrochozoan clades. Novel approaches to coding morphological characters are needed by scoring real observations on species selected as terminals. Still, methodological issues, for example, how to deal with inapplicable characters or the coding of absences, may require novel algorithmic developments. Taxon sampling is another key issue, as phyla should include enough species so as to represent their span of anatomical disparity. On the molecular side, phylogenomics is playing an increasingly important role in elucidating animal relationships, but genomic sampling is still fairly limited within the lophotrochozoan protostomes, for which only three phyla are represented in currently available phylogenies. Future work should therefore concentrate on generating novel morphological observations and on producing genomic data for the lophotrochozoan side of the animal tree of life.
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Affiliation(s)
- Gonzalo Giribet
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.
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Gifondorwa DJ, Leise EM. Programmed cell death in the apical ganglion during larval metamorphosis of the marine mollusc Ilyanassa obsoleta. THE BIOLOGICAL BULLETIN 2006; 210:109-20. [PMID: 16641516 DOI: 10.2307/4134600] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The apical ganglion (AG) of larval caenogastropods, such as Ilyanassa obsoleta, houses a sensory organ, contains five serotonergic neurons, innervates the muscular and ciliary components of the velum, and sends neurites into a neuropil that lies atop the cerebral commissure. During metamorphosis, the AG is lost. This loss had been postulated to occur through some form of programmed cell death (PCD), but it is possible for cells within the AG to be respecified or to migrate into adjacent ganglia. Evidence from histological sections is supported by results from a terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay, which indicate that cells of the AG degenerate by PCD. PCD occurs after metamorphic induction by serotonin or by inhibition of nitric oxide synthase (NOS) activity. Cellular degeneration and nuclear condensation and loss were observed within 12 h of metamorphic induction by NOS inhibition and occur before loss of the velar lobes, the ciliated tissue used for larval swimming and feeding. Velar disintegration happens more rapidly after metamorphic induction by serotonin than by 7-nitroindazole, a NOS inhibitor. Loss of the AG was complete by 72 h after induction. Spontaneous loss of the AG in older competent larvae may arise from a natural decrease in endogenous NOS activity, giving rise to the tendency of aging larvae to display spontaneous metamorphosis in culture.
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Affiliation(s)
- David J Gifondorwa
- Department of Biology, University of North Carolina Greensboro, Greensboro, North Carolina 27402-6170, USA
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Peterson KJ, Eernisse DJ. Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences. Evol Dev 2001; 3:170-205. [PMID: 11440251 DOI: 10.1046/j.1525-142x.2001.003003170.x] [Citation(s) in RCA: 400] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Insight into the origin and early evolution of the animal phyla requires an understanding of how animal groups are related to one another. Thus, we set out to explore animal phylogeny by analyzing with maximum parsimony 138 morphological characters from 40 metazoan groups, and 304 18S rDNA sequences, both separately and together. Both types of data agree that arthropods are not closely related to annelids: the former group with nematodes and other molting animals (Ecdysozoa), and the latter group with molluscs and other taxa with spiral cleavage. Furthermore, neither brachiopods nor chaetognaths group with deuterostomes; brachiopods are allied with the molluscs and annelids (Lophotrochozoa), whereas chaetognaths are allied with the ecdysozoans. The major discordance between the two types of data concerns the rooting of the bilaterians, and the bilaterian sister-taxon. Morphology suggests that the root is between deuterostomes and protostomes, with ctenophores the bilaterian sister-group, whereas 18S rDNA suggests that the root is within the Lophotrochozoa with acoel flatworms and gnathostomulids as basal bilaterians, and with cnidarians the bilaterian sister-group. We suggest that this basal position of acoels and gnathostomulids is artifactal because for 1,000 replicate phylogenetic analyses with one random sequence as outgroup, the majority root with an acoel flatworm or gnathostomulid as the basal ingroup lineage. When these problematic taxa are eliminated from the matrix, the combined analysis suggests that the root lies between the deuterostomes and protostomes, and Ctenophora is the bilaterian sister-group. We suggest that because chaetognaths and lophophorates, taxa traditionally allied with deuterostomes, occupy basal positions within their respective protostomian clades, deuterostomy most likely represents a suite of characters plesiomorphic for bilaterians.
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Affiliation(s)
- K J Peterson
- Department of Biological Sciences, Dartmouth College, Hanover NH 03755, USA
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Hausen H, Bartolomaeus T. Setal Structure and Chaetogenesis inScolelepis squamataandMalacoceros fuliginosus(Spionidae, Annelida). ACTA ZOOL-STOCKHOLM 1998. [DOI: 10.1111/j.1463-6395.1998.tb01154.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Articulated halkieriids from the Lower Cambrian of North Greenland and their role in early protostome evolution. Philos Trans R Soc Lond B Biol Sci 1997. [DOI: 10.1098/rstb.1995.0029] [Citation(s) in RCA: 239] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Articulated halkieriids ofHalkieria evangelistasp. nov. are described from the Sirius Passet fauna in the Lower Cambrian Buen Formation of Peary Land, North Greenland. Three zones of sclerites are recognizable: obliquely inclined rows of dorsal palmates, quincuncially inserted lateral cultrates and imbricated bundles of ventro-lateral siculates. In addition there is a prominent shell at both ends, each with radial ornamentation. Both sclerites and shells were probably calcareous, but increase in body size led to insertion of additional sclerites but marginal accretion of the shells. The ventral sole was soft and, in life, presumably muscular. Recognizable features of internal anatomy include a gut trace and possible musculature, inferred from imprints on the interior of the anterior shell. Halkieriids are closely related to the Middle CambrianWixaxia, best known from the Burgess Shale: this clade appears to have played an important role in early protostome evolution. From an animal fairly closely related toWixaxiaarose the polychaete annelids; the bundles of siculate sclerites prefigure the neurochaetae whereas the dorsal notochaetae derive from the palmates.Wixaxiaappears to have a relic shell and a similar structure in the sternaspid polychaetes may be an evolutionary remnant. The primitive state in extant polychaetes is best expressed in groups such as chrysopetalids, aphroditaceans and amphinomids. The homology between polychaete chaetae and the mantle setae of brachiopods is one line of evidence to suggest that the latter phylum arose from a juvenile halkieriid in which the posterior shell was first in juxtaposition to the anterior and rotated beneath it to provide the bivalved condition of an ancestral brachiopod.H. evangelistasp. nov. has shells which resemble those of a brachiopod; in particular the posterior one. From predecessors of the halkieriids known as siphogonuchitids it is possible that both chitons (polyplacophorans) and conchiferan molluscs arose. The hypothesis of halkieriids and their relatives having a key role in annelid—brachiopod—mollusc evolution is in accord with some earlier proposals and recent evidence from molecular biology. It casts doubt, however, on a number of favoured concepts including the primitive annelid being oligochaetoid and a burrower, the brachiopods being deuterostomes and the coelom being an archaic feature of metazoans. Rather, the annelid coelom arose as a functional consequence of the transition from a creeping halkieriid to a polychaete with stepping parapodial locomotion.
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Fischer FP, Alger M, Cieslar D, Krafczyk HU. The chiton gill: Ultrastructure inChiton olivaceus (Mollusca, Polyplacophora). J Morphol 1990; 204:75-87. [DOI: 10.1002/jmor.1052040109] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Abstract
The girdle epidermis of adult Mopalia muscosa secretes several types of structures, including calcareous spicules and innervated hairs. Newly metamorphosed chitons superficially resemble adult animals, but they lack the adult girdle ornaments, shell sculpture, and coloration. The morphogenesis of the adult girdle structures has not been described previously for any species. Juvenile Mopalia muscosa secrete hairs at metamorphosis, but it was not known if these hairs were sensory or if they were retained as the animals grew. I discovered that the hairs of juveniles become the tips of adult hairs. When juvenile hairs are detectable by light microscopy the sensory components already exist, suggesting that they are functional receptor organs. The other girdle ornaments of young juveniles, the primary calcareous spicules, are lost as the animal grows. I also demonstrated that the hairs are not uniquely innervated; the same sensory structures are produced in conjunction with other girdle ornaments on the marginal and ventral faces.
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Chiton integument: Metamorphic changes in Mopalia muscosa (Mollusca, Polyplacophora). ZOOMORPHOLOGY 1984. [DOI: 10.1007/bf00312184] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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