On describing microbial growth kinetics from continuous culture data: Some general considerations, observations, and concepts

Understanding adsorption and biodegradation in granular activated carbon for drinking water treatment: A critical review

Drinking water treatment plants use granular activated carbon (GAC) to adsorb and remove trace organics, but the GAC has a limited lifetime in terms of adsorptive capacity and needs to be replaced before it is exhausted. Biological degradation of target contaminants can also occur in GAC filters, which might allow the GAC to remain in service longer than expected. However, GAC biofiltration remains poorly understood and unpredictable. To increase the understanding of adsorption and biodegradation in GAC, previous studies have conducted parallel column tests that use one column of GAC (potentially biologically active) to assess overall removal via both adsorption and biodegradation, and one column with either sterilized GAC or biological non-adsorbing media to assess adsorption or biodegradation alone. Mathematical models have also been established to give insight into the adsorption and biodegradation processes in GAC. In this review, the experimental and modeling approaches and results used to distinguish between the role of adsorption and biodegradation were summarized and critically discussed. We identified several limitations: (1) using biological non-adsorbing media in column tests might lead to non-representative extents of biodegradation; (2) sterilization methods may not effectively inhibit biological activity and may affect adsorption; (3) using virgin GAC coated with biofilm could overestimate adsorption; (4) potential biofilm detachment during column experiments could lead to biased results; (5) the parallel column test approach itself is not universally applicable; (6) competitive adsorption was neglected by previous models; (7) model formulations were based on virgin GAC only. To overcome these limitations, we proposed four new approaches: the use of gamma irradiation for sterilization, a novel minicolumn test, compound-specific isotope analysis to decipher the role of adsorption and biodegradation in situ, and a new model to simulate trace organic adsorption and biodegradation in a GAC filter .

Laboratory stimulation of oil-spill effects on marine phytoplankton

Continuous culture conditions designed to achieve a dynamic equilibrium between phytoplankton growth and nutrient input were established for Phaeodactylum tricornutum, Isochrysis galbana and Chlorella salina. The technique was used to determine the no observed effect concentration (NOEC) and lowest observed effect concentration (LOEC) for algae after spiking with diesel oil. P. tricornutum (NOEC=0.25mg/l, LOEC=0.3mg/l) was more sensitive than I. galbana (NOEC=2.5mg/l, LOEC=2.6mg/l), while C. salina (NOEC=16.0mg/l, LOEC=17.0mg/l) was the most tolerant. Continuous renewal of medium ensured that experimental conditions remained stable throughout the test period and is a more environmentally relevant method for assessing the effects of many contaminants.

Characteristics of glucose uptake by glucose- and NH4-limited grown Penicillium ochrochloron at low, medium and high glucose concentration

Glucose uptake by Penicillium ochrochloron (formerly Penicillium simplicissimum) was studied from 0.01 to 400 mM glucose using chemostat culture and bioreactor batch culture. The characteristics of glucose uptake varied considerably with the conditions of growth, harvest and uptake assay. Glucose-limited grown mycelium showed one saturable transport system [K(S) below 0.01 mM; v(max) 1.1-1.2 mmol (g dry weight)(-1)h(-1)] plus a first order process (permeability P=1.2x10(-7)cm s(-1)). Ammonium-limited grown mycelium showed only one saturable transport system [K(S) 0.3-0.7 mM; v(max) 0.5-0.8 mmol (g dry weight)(-1)h(-1)]. During exponential growth at high glucose concentration (300-400 mM) a first order process was found with a P value of 5.6-9.3x10(-7)cm s(-1). After ammonium exhaustion a second first order phase showed a lower P value (6.1-9.3x10(-8)cm s(-1)). A similar change in permeability was also found after a re-evaluation of published data for Gibberella fujikuroi, Aspergillus niger, Aspergillus awamori and Saccharomycopsis lipolytica. For the first order processes simple diffusion was ruled out as a mechanism for glucose uptake. Glucose uptake by P. ochrochloron was controlled more strongly by metabolism than by transport and was not rate limiting for overflow metabolism.

Experimental and theoretical bases of specific affinity, a cytoarchitecture-based formulation of nutrient collection proposed to supercede the Michaelis-Menten paradigm of microbial kinetics

A theory for solute uptake by whole cells was derived with a focus on the ability of oligobacteria to sequester nutrients. It provided a general relationship that was used to obtain the kinetic constants for in situ marine populations in the presence of naturally occurring substrates. In situ affinities of 0.9 to 400 liters g of cells(-1) h(-1) found were up to 10(3) times smaller than those from a "Marinobacter arcticus " isolate, but springtime values were greatly increased by warming. Affinities of the isolate for usual polar substrates but not for hydrocarbons were diminished by ionophores. A kinetic curve or Monod plot was constructed from the best available data for cytoarchitectural components of the isolate by using the theory together with concepts and calculations from first principles. The order of effect of these components on specific affinity was membrane potential > cytoplasmic enzyme concentration > cytoplasmic enzyme affinity > permease concentration > area of the permease site > translation coefficient > porin concentration. Component balance was influential as well; a small increase in cytoplasmic enzyme concentration gave a large increase in the effect of permease concentration. The effect of permease concentration on specific affinity was large, while the effect on K(m) was small. These results are in contrast to the Michaelis-Menten theory as applied by Monod that has uptake kinetics dependent on the quality of the permease molecules, with K(m) as an independent measure of affinity. Calculations demonstrated that most oligobacteria in the environment must use multiple substrates simultaneously to attain sufficient energy and material for growth, a requirement consistent with communities largely comprising few species.

Bioadsorber efficiency, design, and performance forecasting for alachlor removal

This study discusses a mathematical modeling and design protocol for bioactive granular activated carbon (GAC) adsorbers employed for purification of drinking water contaminated by chlorinated pesticides, exemplified by alachlor. A thin biofilm model is discussed that incorporates the following phenomenological aspects: film transfer from the bulk fluid to the adsorbent particles, diffusion through the biofilm immobilized on adsorbent surface, adsorption of the contaminant into the adsorbent particle. The modeling approach involved independent laboratory-scale experiments to determine the model input parameters. These experiments included adsorption isotherm studies, adsorption rate studies, and biokinetic studies. Bioactive expanded-bed adsorber experiments were conducted to obtain realistic experimental data for determining the ability of the model for predicting adsorber dynamics under different operating conditions. The model equations were solved using a computationally efficient hybrid numerical technique combining orthogonal collocation and finite difference methods. The model provided accurate predictions of adsorber dynamics for bioactive and non-bioactive scenarios. Sensitivity analyses demonstrated the significance of various model parameters, and focussed on enhancement in certain key parameters to improve the overall process efficiency. Scale-up simulation studies for bioactive and non-bioactive adsorbers provided comparisons between their performances, and illustrated the advantages of bioregeneration for enhancing their effective service life spans. Isolation of microbial species revealed that fungal strains were more efficient than bacterial strains in metabolizing alachlor. Microbial degradation pathways for alachlor were proposed and confirmed by the detection of biotransformation metabolites and byproducts using gas chromatography/mass spectrometry.

Growth kinetics and competition--some contemporary comments

Results of competition experiments with one growth-limiting factor under idealized experimental conditions have been reported extensively, and usually provide ample support for the conclusion that 'complete competitors cannot coexist'. However, under conditions of multiple substrate limitation and discontinuous or alternating supply of nutrients, coexistence of species is quite common. Since such patterns of nutrient supply may be expected to prevail in many natural environments the mechanisms ruling the survival and growth of bacteria under such conditions need to be understood. However, it appears that surprisingly little is known of the physiological state of individual competing species grown in mixed cultures. Unfortunately, basic information such as the actual concentration of limiting nutrients is lacking in most cases. But perhaps the recent development of new and powerful techniques to explore the physiological properties even of individual cells will further stimulate studies into the mechanisms behind the competitiveness of microbial species.

Nutrient-limited microbial growth kinetics: overview and recent advances

Traditional concepts of nutrient uptake and growth kinetics as linked by cell yield are presented. Phenomena affecting the kinetics are examined along with a discussion of those which lead to ambiguity. Concepts of flux control are presented to help understand the distribution of material along metabolic pathways. Specific affinity is described to relate nutrient accumulation rates to transporter density. It is shown to be a primary kinetic constant and the best available index of nutrient collection ability. As an aid to understanding, specific affinity is reexpressed in terms of membrane permeability. Formulations of nutrient transport rate as a function of cellular composition, particularly transporter and enzyme content and known as janusian kinetics, are described as an improvement to specific affinity theory. Procedures for quantified unidirectional fluxes are reviewed to identify the difference between gross and net transport rates of substrate. Collision frequency theory is used to show that in addition to total biomass, cell size and transporter density should also be included in rate equations describing microbial growth. Theory diversity suggests that one reason for microbial metabolic is that the likelihood of additional collisions of substrate molecules with a cell surface, after an initial collision, requires only a sparse distribution of transporter sites for maximal rate, leaving room for additional transporters able to collect other substrate types.

Some reflections on microbial competitiveness among heterotrophic bacteria

The results of a large number of studies on microorganisms subjected to various degrees of substrate limitation have led to the idea that many species are particularly well adapted to growth at a very low rate at extremely low nutrient concentrations. The possible similarity between this type of bacteria and oligotrophic species is discussed. Some attention is paid to the problem of predicting the competitiveness of microbial species. To this end the apparent specific affinity of an organism for a given substrate is discussed in some detail. It is attempted to bring terminology used in describing this parameter in line with that commonly used in microbial physiology and ecology. Using one particular field study as an example the possible usefulness and limitations of this concept in field studies are discussed.

Microbial removal of wastewater organic compounds as a function of input concentration in soil columns

The fate of six organic compounds during rapid infiltration of primary wastewater through soil columns was studied. Feed solutions were prepared which contained all six compounds in individual concentrations ranging from 1 to 1,000 micrograms/liter and were applied to separate soil columns on a flooding-drying schedule. Feed solutions and column effluents were analyzed for the compounds by XAD resin (Rohm and Haas Co.) extraction and gas chromatography-mass spectrometry during each of three successive inundation cycles. Breakthrough profiles of o-phenylphenol were relatively consistent during the test, with fractional breakthrough (mass output/mass input) being independent of input concentration. Consistent profiles were also observed for 2-(methylthio)benzothiazole, although fractional breakthroughs were higher at lower input concentrations, indicating that removal processes were operating less efficiently at these levels. The behavior of p-dichlorobenzene was similar to that of 2-(methylthio)benzothiazole after the first inundation cycle, with the exception that increased fractional breakthroughs were observed at the highest input concentration as well. Microbial adaptation was evident for benzophenone, 2-methylnaphthalene, and p-(1,1,3,3-tetramethylbutyl)phenol, as indicated by increased removal efficiencies during successive inundation cycles, especially at the higher input concentrations. Column effluent concentrations of the latter two compounds were independent of input concentrations during the final stage of the test. Microbial activity and adaptation were confirmed for several of the compounds by using isotopes and measuring the extent of mineralization in batch tests with soil from one of the columns.(ABSTRACT TRUNCATED AT 250 WORDS)

Phosphate-limited continuous culture of Rhodotorula rubra: kinetics of transport, leakage, and growth

The phosphate-limited growth kinetics of Rhodotorula rubra, a small yeast of marine origin, were examined by analysis of 32P distributions in continuous cultures. Isotope relaxation procedures were used to identify unidirectional flows of Pi and organic phosphate among compartments modeled during growth. The concentrations of phosphates in these compartments at various growth rates were used, together with attendant flows, to produce a mathematical model of growth. Both Pi and phosphate-containing metabolic intermediates leaked from cells during growth. Total leakage ranged from 4 to 10% of influx and was comprised mostly of Pi. Transport capacity was at least 10 times that required for growth at saturating Pi concentrations, so that influx was linear with concentration during growth. This led to the realization that the curvature of Monod plots (Kmu = 12 nM mumax = 0.18/h, and the threshold At = 2.5 nM) is due to change in yield with growth rate. Growth rate related to Pi by the affinity, aA (= 0.43 liter/mg of cells.h) of cells for Pi and the growth rate-dependent yield. It was also specified by a series of kinetic constants that specified flow among the various compartments and equilibrium compartment concentrations as they were set by extracellular Pi. The importance of leakage by healthy cells to the organic chemistry of aquatic systems is noted.

Multiple-carbon-source-limited growth kinetics of a marine coryneform bacterium

The steady-state growth rate of a marine isolate was related to the concentrations of several carbon and energy source substrates when these substrates limited growth simultaneously in continuous culture. Glucose limitation was characterized by a threshold of 0.21 mg/liter for growth, a half-maximal growth rate at 0.48 mg/liter, U-shaped curves in extractable pool concentration-versus-growth velocity plots, and slow maximal growth rates. Arginine addition reduced the glucose threshold to 0.008 mg/liter, more than doubled the maximal growth rate, and stabilized pool concentrations at low growth rates. Addition of a third substrate, glutamate, caused further reduction of the glucose concentration a steady state. Maximal reduction of the glucose concentration was effected by adding a mixture of 20 amino acids. Steady-state limiting nutrient concentration was dependent on the specific identity of the auxiliary nutrients and on the concentration ratio at which they were supplied. When glucose was supplemented with an equal quantity of an amino acid mixture, the external steady-state glucose remained below 10 mug/liter. When 1 mug of glucose was added to a 2.5-mg/liter amino acid mixture, at least 70% of it was consumed at steady state in spite of the threshold observed. Lack of crossover between metabolic pathways, suggested by the absence of glucose carbon in pool glutamate of arginine-glucose-grown cells, may have been partly responsible for the mixed carbon source stimulation of nutrient accumulation observed. The affinity observed is sufficient to account for normal growth at a total organic substrate concentration of only 0.11 mg/liter when supplied from a suitable mixture.