HCA520, a novel tumor associated antigen, involved in cell proliferation and apoptosis

Damage by typhoon Hato compared among three different plant communities in Macau, China

Tropical cyclones are among the major climatic disasters threatening human survival and development. They are also responsible in part for forest taxonomic composition and dynamics and may lead to catastrophic succession between ecosystems. In this study, we aimed to investigate the extensiveness and severity of the effect caused by Typhoon Hato among the three primary plant communities in Macau, China, including Guia Hill, Taipa Grande, and Ka Ho. The plants' damage was classified into seven categories, ranging from Degree 6, which represents the most severe damage, to Degree 0, which represents almost no damage. The impact of Typhoon Hato was evaluated at different levels, including sample plots, species, DBH, and community structure. Our results show that the sub-climax community of Guia Hill was most disturbed, with the highest damage index (DI) of 55.28%. Similarly, the Ka Ho shoreline shrub community was also considerably influenced, with a DI of 48.14%. By contrast, the managed secondary forest around Taipa Grande was the least affected, with a DI of 32.66%. Additionally, from the tree layer perspective, the tall trees at Guia Hill canopy layer were directly affected by wind, while the dense understory layer suffered from severe secondary damage due to the fallen trees and branches. For Taipa Grande, the dominant species in the canopy layer were shorter and had less direct damage; the secondary damage was also small as a consequence. Ka Ho had more dwarfed and multibranched species surviving from the sea breeze since Ka Ho was close to the sea. The dense plant structure in Ka Ho protected plants from being easily broken by typhoons, but some twigs and leaves were lost. Some less damaged local species and easily recovered species found in this study could inform the selection of wind-resistant species for the typhoon-affected communities.

Large scale rice germplasm screening for identification of novel brown planthopper resistance sources

Rice (Oryza sativa L.) is a staple food crop globally. Brown planthopper (Nilaparvata lugens Stål, BPH) is the most destructive insect that threatens rice production annually. More than 40 BPH resistance genes have been identified so far, which provide valuable gene resources for marker-assisted breeding against BPH. However, it is still urgent to evaluate rice germplasms and to explore more new wide-spectrum BPH resistance genes to combat newly occurring virulent BPH populations. To this end, 560 germplasm accessions were collected from the International Rice Research Institute (IRRI), and their resistance to current BPH population of China was examined. A total of 105 highly resistant materials were identified. Molecular screening of BPH resistance genes in these rice germplasms was conducted by developing specific functional molecular markers of eight cloned resistance genes. Twenty-three resistant germplasms were found to contain none of the 8 cloned BPH resistance genes. These accessions also exhibited a variety of resistance mechanisms as indicated by an improved insect weight gain (WG) method, suggesting the existence of new resistance genes. One new BPH resistance gene, Bph44(t), was identified in rice accession IRGC 15344 and preliminarily mapped to a 0-2 Mb region on chromosome 4. This study systematically sorted out the corresponding relationships between BPH resistance genes and germplasm resources using a functional molecular marker system. Newly explored resistant germplasms will provide valualble donors for the identification of new resistance genes and BPH resistance breeding programs.

Supplementary Information

The online version contains supplementary material available at 10.1007/s11032-023-01416-x.

Physiological mechanism of exogenous brassinolide alleviating salt stress injury in rice seedlings

Brassinolide (BR) is a sterol compound, which can regulate plant seed germination, flowering, senescence, tropism, photosynthesis, stress resistance, and is closely related to other signaling molecules. This study aimed to evaluate the ability of soaking with BR to regulate growth quality at rice seedling stage under salt stress. Results demonstrated that salt stress increases the contents of ROS, MDA, Na⁺ and ABA, reduces the the SPAD value, net photosynthetic rate (Pn), stomatal conductance (Gs), transpiration rate (Tr), maximum fluorescence (Fm), variable fluorescence (Fv), the effective photochemical efficiency of PSII (Fv/Fo) and the maximum photochemical efficiency of PSII (Fv/Fm), reduces the biomass production and inhabits plant growth. All of these responses were effectively alleviated by BR soaking treatment. Soaking with BR could increase the activities of superoxide dismutase, peroxidase, catalase, ascorbate peroxidase, and the contents of ascorbic acid, glutathione as well as soluble protein and proline, while BR soaking treatment inhibited the accumulation of ROS and reduced the content of MDA. BR soaking significantly reduced the contents of Na⁺ and increased the contents of K⁺ and Ca²⁺, indicating that soaking with BR is beneficial to the excretion of Na⁺, the absorption of K⁺ and Ca²⁺ and the maintenance of ion balance in rice seedlings under salt stress. BR also maintained endogenous hormone balance by increasing the contents of indoleacetic acid (IAA), zeatin (ZT), salicylic acid (SA), and decreasing the ABA content. Soaking with BR significantly increased the SPAD value, Pn and Tr and enhanced the Fm, Fv/Fm and Fv/Fo of rice seedlings under NaCl stress, protected the photosythetic system of plants, and improved their biomass. It is suggested that BR was beneficial to protect membrane lipid peroxidation, the modulation of antioxidant defense systems, ion balance and endogenous hormonal balance with imposition to salt stress.

Transcriptome and metabolome analyses reveal the responses of brown planthoppers to RH resistant rice cultivar

The brown planthopper (BPH) Nilaparvata lugens (Stål) (Hemiptera: Delphacidae) is one of the most destructive rice pests in Asia. The application of insect-resistant rice cultivars is currently one of the principal means of controlling BPH. Understanding the physiological response mechanisms of BPH feeding on insect-resistant rice is the key for maintaining rice yield. Here, we measured the ecological fitness and analyzed the whole-body transcriptome and metabolome of BPH reared on susceptible cultivar Taichung Native 1 (TN1) and resistant cultivar Rathu Heenati (RH). Our results showed that RH significantly decreased the survival rate, female adult weight, honeydew secretion, the number of eggs laid per female and fat content of BPH. We identified 333 upregulated and 486 downregulated genes in BPH feeding on RH. These genes were mainly involved in energy metabolism, amino acid metabolism, hormone synthesis and vitamin metabolism pathways. We also detected 145 differentially accumulated metabolites in BPH reared on RH plants compared to BPH reared on TN1 plants, including multiple carbohydrates, amino acids, lipids, and some nucleosides. Combined analyses of transcriptome and metabolome showed that five pathways, including starch, sucrose, and galactose metabolism, were altered. The network for these pathways was subsequently visualized. Our results provide insights into the mechanisms of metabolite accumulation in BPH feeding on the RH rice variety. The results could help us better understand how insect-resistant rice cultivars combat BPH infestation, which is important for the comprehensive management of BPH.

Investigation on the atomization characteristics and structure parameters of alcohol-based fuel in small stove

In this paper, a set of small stoves was designed which is used for alcohol-based fuel combustion. The research object is the atomization process of alcohol-based fuel in the stove. By combining numerical analysis and experiment, this paper investigated the influence of spray pressure on the atomization characteristics of alcohol-based fuel in the stove under the static environment. The results showed that as the increase of spray pressure, the atomization cone angle increased firstly and then decreased slightly and when the spray pressure was 0.8 MPa, the atomization cone angle reached the maximum value of 79.5°; the SMD (Sauter mean diameter) at the same position of the combustion chamber decreased slowly and the spray height increased slowly and both of the SMD and spray height changed slightly when the spray pressure was not less than 0.8 MPa. The experiment verified the correctness of the numerical analysis method, and the coincidence degree between both was more than 92%. This paper also investigated the influence of swirl structure parameters on the atomization characteristics of fuel in the stove under air distribution condition by using numerical analysis method. The results showed that the air central recirculation zone only generated in the stove combustion chamber when the swirl angle was not less than 30°; the minimum SMD and the maximum average velocity of all central recirculation zones sections were obtained when the combustion chamber with 12 swirl plates and 45° swirl angle, and the atomization characteristics of the fuel in this structure were better. Further research showed that when the combustion chamber with 6 swirl plates and 40° swirl angle, the SMD of all the central recirculation zone sections is the smallest and the average velocity was slightly smaller than the maximum value; and after comprehensive analysis, the atomization characteristics of the fuel in the stove with this structure are the best. These above research results will provide reference value for the design and development of alcohol-based fuel special stoves.

Agrobacterium-Mediated Genetic Transformation of Embryogenic Callus in a Liriodendron Hybrid (L. Chinense × L. Tulipifera)

A highly efficient genetic transformation system of Liriodendron hybrid embryogenic calli through Agrobacterium-mediated genetic transformation was established and optimized. The Agrobacterium tumefaciens strain EHA105, harboring the plasmid pBI121, which contained the ß-glucuronidase (GUS) gene and neomycin phosphotransferase II (npt II) gene under the control of the CaMV35S promoter, was used for transformation. Embryogenic calli were used as the starting explant to study several factors affecting the Agrobacterium-mediated genetic transformation of the Liriodendron hybrid, including the effects of various media, selection by different Geneticin (G418) concentrations, pre-culture period, Agrobacterium optical density, infection duration, co-cultivation period, and delayed selection. Transformed embryogenic calli were obtained through selection on medium containing 90 mg L-1 G418. Plant regeneration was achieved and selected via somatic embryogenesis on medium containing 15 mg L-1 G418. The optimal conditions included a pre-culture time of 2 days, a co-culture time of 3 days, an optimal infection time of 10 min, and a delayed selection time of 7 days. These conditions, combined with an OD600 value of 0.6, remarkably enhanced the transformation rate. The results of GUS chemical tissue staining, polymerase chain reaction (PCR), and southern blot analysis demonstrated that the GUS gene was successfully expressed and integrated into the Liriodendron hybrid genome. A transformation efficiency of 60.7% was achieved for the regenerated callus clumps. Transgenic plantlets were obtained in 5 months, and the PCR analysis showed that 97.5% of plants from the tested G418-resistant lines were PCR positive. The study of the Liriodendron hybrid reported here will facilitate the insertion of functional genes into the Liriodendron hybrid via Agrobacterium-mediated transformation.

Transcriptome expression profiles reveal response mechanisms to drought and drought-stress mitigation mechanisms by exogenous glycine betaine in maize

Drought stress is one of the major abiotic stresses that limit growth, development and yield of maize crops. To better understand the responses of maize inbred lines with different levels of drought resistance and the molecular mechanism of exogenous glycine betaine (GB) in alleviating drought stress, the responses of two maize inbred lines to drought stress and to the stress-mitigating effects of exogenous GB were investigated. Seedling morphology, physiological and biochemical indexes, root cell morphology and root transcriptome expression profiles were compared between a drought-tolerant inbred line Chang 7-2 and drought-sensitive inbred line TS141. Plants of both lines were subjected to treatments of drought stress alone and drought stress with application of exogenous GB. The results showed that with the increase of drought treatment time, the growth and development of TS141 were inhibited, while those of Chang 7-2 were not significantly different from those of the control (no drought stress and GB). Compared with the corresponding data of the drought-stress group, every index measured from the two inbred lines indicated mitigating effects from exogenous GB, and TS141 produced stronger mitigating responses due to the GB. Transcriptome analysis showed that 562 differentially expressed genes (DEGs) were up-regulated and 824 DEGs were down-regulated in both inbred lines under drought stress. Due to the exogenous GB, 1061 DEGs were up-regulated and 424 DEGs were down-regulated in both lines. In addition, quantitative real-time polymerase chain reaction (qRT-PCR) was used to verify 10 DEGs screened from the different treatments. These results showed that the expression of 9 DEGs were basically consistent with their respective transcriptome expression profiles. The results of this study provide models of potential mechanisms of drought tolerance in maize as well as potential mechanisms of how exogenous GB may regulate drought tolerance.

Preparation and Study of Folate Modified Albumin Targeting Microspheres

In this study, folate modified bovine serum albumin was successfully synthesized, while preparation of Nintedanib albumin microspheres (ND-FSA NPs) as a carrier was carried out via electrospinning technology. Folate modified albumin was used to enhance the targeting potential of the prepared microspheres. The prepared microspheres had spherical appearance and smooth outer surface. The diameters of microspheres (764.68 ± 88.46 nm) and zeta potential (- 18.38 ± 0.41 mV) were acceptable. The prepared ND-FSA NPs demonstrated a good degree of modification, wherein the modification rate was 28.1%. In vitro release was significantly increased in three different media (double deionized water-DDW, HCl-pH 1.2, and phosphate buffered solution containing 0.5% Tween 80). It is worth noting that incorporation of Nintedanib into folic acid modified albumin microspheres resulted in an enhanced uptake of the drug into MCF-7 breast cancer cells coupled with higher inhibition rate. Altogether, incorporation of Nintedanib into folate modified albumin microspheres is a new approach to improve water solubility and targeting effect of the drug.

Study on the Relationship between Richness and Morphological Diversity of Higher Taxa in the Darkling Beetles (Coleoptera: Tenebrionidae)

Many studies have found that the correlation between species richness (SR) and morphological diversity (MD) is positive, but the correlation degree of these parameters is not always consistent due to differences in categories and various ecological factors in the living environment. Based on this, related studies have revealed the good performance of using higher taxa in biodiversity research, not only by shifting the testing group scale from local communities to worldwide datasets but also by adding different taxonomic levels, such as the genus level. However, it remains unclear whether this positive correlation can also be applied to other categories or groups. Here, we evaluated the applicability of higher taxa in the biodiversity study of darkling beetles by using 3407 species (9 subfamilies, 89 tribes, and 678 genera), based on the correlation between taxa richness and morphological diversity in the tribe/genus/species. In addition, the continuous features prevalent in the tenebrionids, pronotum and elytron, were selected, and the morphological diversity of various groups was obtained by the geometric morphometric approach to quantify the morphologic information of features. This study found that genus/species richness in subfamilies Pimelinae and Stenochiinae was positively correlated with the change trend of MD, and the correlation between the MD of elytron and taxa richness gradually decreased from the tribe-level to the genus-level to the species-level test. The results confirm the stable morphology and simple function of the elytron and the applicability of tribe level in biodiversity research.

Elytra coupling of the ladybirdCoccinella septempunctatafunctions as an energy absorber in intentional falls

Some insects, such as bees, wasps, and bugs, have specialized coupling structures to synchronize the wing motions in flight. Some others, such as ladybirds, are equipped with coupling structures that work only at rest. By locking elytra into each other, such structures provide hindwings with a protective cover to prevent contamination. Here, we show that the coupling may play another significant role: contributing to energy absorption in falls, thereby protecting the abdomen against mechanical damage. In this combined experimental, numerical and theoretical study, we investigated free falls of ladybirds (Coccinella septempunctata), and discovered that upon collision to the ground, the coupling may fail and the elytra may unlock. This unlocking of the coupling increased the energy absorption by 33%, in comparison to when the elytra remain coupled. Using micro-computed tomography scanning, we developed comparative models that enabled us to simulate impact scenarios numerically. Our results showed that unlocking of the coupling, here called elytra splitting, reduces both the peak impact force and rebound velocity. We fabricated the insect-inspired coupling mechanism using 3D printing and demonstrated its application as a damage preventing on system for quadcopters in accidental collisions.

Hyperbranched polymer surfactant: synthesis, characterization and surface tension activity

Abstract

A series of hyperbranched polymer surfactants (HBP-C8, HBP-C12 and HBP-C16) were synthesized by the reaction between hydroxyl-terminated hyperbranched polymers (HBP) and fatty acyl chloride. The structure of obtained hyperbranched polymer surfactant was characterized by FTIR, NMR and GPC. The results showed that the products have amphiphilic structure. The thermal property of the hyperbranched polymer surfactant investigated by DSC and TGA was strongly influenced by the length of end alkyl chain. Surface activity of hyperbranched polymer surfactant was analyzed by surface tension method and UV spectrophotometry, respectively. The results showed that hyperbranched polymer surfactant took on better surface activity, which can effectively reduce the surface tension of the water. The hyperbranched polymer surfactant has a lower critical micelle concentration (CMC) and displays single molecular micellar properties, which can package small hydrophilic molecules in relatively low concentration.

Graphical abstract

Factors Affecting Shale Gas Chemistry and Stable Isotope and Noble Gas Isotope Composition and Distribution: A Case Study of Lower Silurian Longmaxi Shale Gas, Sichuan Basin

The Weiyuan (WY) and Changning (CN) fields are the largest shale gas fields in the Sichuan Basin. Though the shale gases in both fields are sourced from the Longmaxi Formation, this study found notable differences between them in molecular composition, carbon isotopic composition, and noble gas abundance and isotopic composition. CO2 (av. 0.52%) and N2 (av. 0.94%) were higher in Weiyuan than in Changning by an average of 0.45% and 0.70%, respectively. The δ13C1 (−26.9% to −29.7%) and δ13C2 (−32.0% to −34.9%) ratios in the Changning shale gases were about 8% and 6% heavier than those in Weiyuan, respectively. Both shale gases had similar 3He/4He ratios but different 40Ar/36Ar ratios. These geochemical differences indicated complex geological conditions and shed light on the evolution of the Lonmaxi shale gas in the Sichuan Basin. In this study, we highlight the possible impacts on the geochemical characteristics of gas due to tectonic activity, thermal evolution, and migration. By combining previous gas geochemical data and the geological background of these natural gas fields, we concluded that four factors account for the differences in the Longmaxi Formation shale gas in the Sichuan Basin: a) A different ratio of oil cracking gas and kerogen cracking gas mixed in the closed system at the high over-mature stage. b) The Longmaxi shales in WY and CN have had differential geothermal histories, especially in terms of the effects from the Emeishan Large Igneous Province (LIP), which have led to the discrepancy in evolution of the shales in the two areas. c) The heterogeneity of the Lower Silurian Longmaxi shales is another important factor, according to the noble gas data. d) Although shale gas is generated in closed systems, natural gas loss throughout geological history cannot be avoided, which also accounts for gas geochemical differences. This research offers some useful information regarding the theory of shale gas generation and evolution.

The identification of key candidate genes mediating yellow seedling lethality in a Lilium regale mutant

Leaf color mutants are ideal materials for exploring plant photosynthesis mechanisms, chlorophyll biosynthetic pathways and chloroplast development. The yellow seedling lethal mutant lrysl1 was discovered from self-bred progenies of Lilium regale; however, the mechanism of leaf color mutation remains unclear. In this study, the ultrastructural and physiological features and de novo RNA-Seq data of a L. regale leaf color mutant and wild-type L. regale were investigated. Genetic analysis indicated that the characteristics of the lrysl1 mutant were controlled by a recessive nuclear gene. The chlorophyll a, chlorophyll b and carotenoid contents in the mutant leaves were lower than those in the wild-type leaves. Furthermore, the contents of the chlorophyll precursors aminolevulinic acid (ALA), porphobilinogen (PBG), protoporphyrin IX (ProtoIX), Mg-protoporphyrin IX (Mg-ProtoIX), and protochlorophyll (Pchl) decreased significantly in mutant leaves. Transcriptome data from the mutant and wild type showed that a total of 892 differentially expressed genes were obtained, of which 668 and 224 were upregulated genes and downregulated genes in the mutant, respectively. Almost all genes in the photosynthesis pathway and chlorophyll biosynthetic pathway were downregulated in the mutant, which corroborated the differences in the physiological features mentioned above. Further research indicated that the chloroplasts of the mutant leaves exhibited an abnormal morphology and distribution and that the expression of a gene related to chloroplast development was downregulated. It was concluded that abnormal chloroplast development was the main cause of leaf color mutation in the mutant lrysl1 and that LrGLK was a gene related to chloroplast development in L. regale. This research provides a foundation for further research on the mechanism by which LrGLK regulates chloroplast development in L. regale.

Amphiphilic hyperbranched polymers: synthesis, characterization and self-assembly performance

Abstract

A series of amphiphilic hyperbranched polymers (AHP-s, the “s” refers to the algebra of AHP) were synthesized by the reaction between hydroxyl-terminated hyperbranched polymers (HBP-s, the “s” refers to the algebra of HBP) and palmitoyl chloride. FTIR, NMR and GPC were used to determine the structure of AHP-s, the results showed that AHP-s exhibits core-shell structure. The thermal properties of polymers were investigated by DSC and TGA. It was found that AHP-2, AHP-3 and AHP-4 display higher thermal stability than AHP-1 (AHP-1, AHP-2, AHP-3 and AHP-4 represent the first, second, third and fourth generation AHP, respectively). Furthermore, the self-assembly performance of AHP-s in THF solvent was investigated by TEM and SEM. Finally, the encapsulation capacity of the AHP-s for methyl orange (MO) was explored at different concentrations of AHP-s and pH conditions. It was found that AHP-s is capable of accommodating hydrophilic guest MO. Moreover, the higher generation of AHP-s, the stronger encapsulation capacity obtained. And the encapsulation capacity closely associated with the pH of encapsulation system.

Graphical abstract

Fire Alters Soil Properties and Vegetation in a Coniferous–Broadleaf Mixed Forest in Central China

Fire is the predominant natural disturbance that influences the community structure as well as ecosystem function in forests. This study was conducted to examine the soil properties, loss of aboveground biomass, and understory plant community in response to an anthropogenic fire in a coniferous (Pinus massoniana Lamb.) and broadleaf (Quercus acutissima Carruth.) mixed forest in a subtropical–temperate climatic transition zone in Central China. The results showed that soil pH, NO3−-N concentration, and microbial biomass carbon (C) increased three months after the fire; however, there were no significant differences in soil organic C, total nitrogen (N), NH4+-N concentration, or microbial biomass N between the burned and unburned observed plots. The total aboveground biomass was 39.0% lower in the burned than unburned plots four weeks after fire. Direct biomass combustion (19.15 t ha−1, including understory shrubs and litters) was lower than dead wood biomass loss (23.69 t ha−1) caused by the fire. The declining trends of tree mortality with increasing diameter at breast height for both pine and oak trees suggest that small trees are more likely to die during and after fires due to the thinner bark of small trees and tree and branch fall. In addition, burning significantly stimulated the density of shrub (160.9%) and herb (88.0%), but it also affected the richness of shrub and herb compared with that in the unburned plots two months after the fire. The rapid recovery of understory plants after fires suggest that the diversity of understory species could benefit from low-severity fires. Our findings highlight that the decomposition of dead wood and understory community recovery should be considered for offsetting C emissions after fires for further research.

Support Vector Machine Algorithm for Automatically Identifying Depositional Microfacies Using Well Logs

Depositional microfacies identification plays a key role in the exploration and development of oil and gas reservoirs. Conventionally, depositional microfacies are manually identified by geologists based on the observation of core samples. This conventional method for identifying depositional microfacies is time-consuming, and only the depositional microfacies in a few wells can be identified due to the limited core samples in these wells. In this study, the support vector machine (SVM) algorithm is proposed to identify depositional microfacies automatically using well logs. The application of SVM includes the following steps: First, the depositional microfacies are determined manually in several wells with core samples. Then, the training sets used in the SVM algorithm are extracted from the well logs. Finally, a quantitative discrimination model based on the SVM algorithm is established to realize the classification of depositional microfacies. Field application shows that this innovative and constructive solution can be effectively used in uncored wells to identify depositional microfacies with a rate of accuracy approaching 84%. It overcomes the limitation of the conventional manual method which greatly contributes to the cost-saving of core analysis and improves the sustainable profitability of oil and gas exploration.