Analysis of vigilant scanning behavior in mice using two-point digital video tracking

Supervised machine learning aided behavior classification in pigeons

Manual behavioral observations have been applied in both environment and laboratory experiments in order to analyze and quantify animal movement and behavior. Although these observations contributed tremendously to ecological and neuroscientific disciplines, there have been challenges and disadvantages following in their footsteps. They are not only time-consuming, labor-intensive, and error-prone but they can also be subjective, which induces further difficulties in reproducing the results. Therefore, there is an ongoing endeavor towards automated behavioral analysis, which has also paved the way for open-source software approaches. Even though these approaches theoretically can be applied to different animal groups, the current applications are mostly focused on mammals, especially rodents. However, extending those applications to other vertebrates, such as birds, is advisable not only for extending species-specific knowledge but also for contributing to the larger evolutionary picture and the role of behavior within. Here we present an open-source software package as a possible initiation of bird behavior classification. It can analyze pose-estimation data generated by established deep-learning-based pose-estimation tools such as DeepLabCut for building supervised machine learning predictive classifiers for pigeon behaviors, which can be broadened to support other bird species as well. We show that by training different machine learning and deep learning architectures using multivariate time series data as input, an F1 score of 0.874 can be achieved for a set of seven distinct behaviors. In addition, an algorithm for further tuning the bias of the predictions towards either precision or recall is introduced, which allows tailoring the classifier to specific needs.

The effect of angiotensin AT1A inactivation on innate and learned fear responses in mice and its relationship to blood pressure

Angiotensin AT₁ receptors are implicated in behavioral and physiological processes associated with fear and stress. However, the precise role of AT₁ receptors in modulating fear-related behavior and its relation to their physiological effects remains unclear. Here, we examined innate and learned fear responses and their relationship to cardiovascular arousal in AT_1A receptor knockout (AT_1A^-/-) mice. Using synchronized video and blood pressure telemetry, we found that, in a novel test environment, AT_1A^-/- mice showed reduced neophobia but a similar rise in blood pressure, as compared to AT_1A^+/+ mice. In response to a discrete threat, footshock, both flight behavior and cardiovascular arousal were decreased in AT_1A^-/- mice. Reduced flight behavior was also observed in AT_1A^-/- mice in the elevated T-maze test. During fear conditioning, the immediate freezing response to the first shock, but not the rate of freezing acquisition was decreased in AT_1A^-/- mice. Likewise, AT_1A^-/- mice showed reduced freezing and pressor responses to the first re-exposure, but normal rate of freezing extinction over subsequent trials. Similarly, in the elevated T-maze, the rates of avoidance acquisition and escape learning remained unchanged in AT_1A^-/- mice. Finally, after re-exposure, AT_1A^-/- mice displayed altered c-Fos expression, compared to AT_1A^+/+ mice, in the hypothalamus and periaqueductal gray but not in fear-related limbic-cortical areas, nor in medullary nuclei that convey visceral afferent information. We conclude that AT_1A receptor knockout reduces innate fear responses, without affecting learning efficiency in mice. These effects are dissociable from cardiovascular effects and likely reflect altered neurotransmission in hypothalamic-midbrain defense regions.

Early life stress and the propensity to develop addictive behaviors

There is a vast literature on effects of early life manipulations in rodents much of which is aimed at investigating the long-term consequences related to emotion and cognition in adulthood. Less is known about how these manipulations affect responses reflective of alcohol (AUD) and substance (SUD) use disorders. The purpose of this paper is to review the literature of studies that employed early life manipulations and assessed behavioral responses to psychoactive substances, specifically alcohol, opiates, and stimulants, in rodents. While the findings with alcohol are more limited and mixed, studies with opiates and stimulants show strong support for the ability of these manipulations to enhance behavioral responsivity to these substances in line with epidemiological data. Some outcomes show sex differences. The mechanisms that influence these enduring changes may reflect epigenetic alterations. Several studies support a role for altered DNA methylation (and other epigenetic mechanisms) as biological responses to early environmental insults. The chemical changes induced by DNA methylation affect transcriptional activity of DNA and thus can have a long-term impact on the individual's phenotype. Such effects are particularly robust when they occur during sensitive periods of brain development (e.g., first postnatal weeks in rodents). We review this emerging literature as it relates to the known neurobiology of AUDs and SUDs and suggest new avenues of research. Such findings will have implications for the treatment and prevention of AUDs and SUDs and could provide insight into factors that support resiliency.

Postnatal diisopropylfluorophosphate enhances conditioned vigilance in adult BALB/c and C57BL/6 mice and alters expression of acetylcholinesterase splice variants

The long-term effects of postnatal exposure to an organophosphate substance diisopropylfluorophosphate (DFP) were examined on fear conditioning in adult mice. Immediate and long-term changes in the expression of synaptic acetylcholinesterase (AChE-S) and readthrough acetylcholinesterase (AChE-R) transcripts were explored, in view of reports relating expression of these splice variants to stress and anxiety. BALB/c and C57BL/6 mice were injected daily, on postnatal days 4-10, with 1 mg/kg of DFP or saline and tested as adults for cued and contextual freezing and scanning. Real-time PCR was used to investigate expression of the rare AChE-R and AChE-S mRNA postnatally and in fear-conditioned adults. DFP-pretreated male mice showed increased conditioned cued scanning and both male and female DFP-treated mice showed enhanced contextual scanning. DFP abolished the stress-induced increase in AChE transcript expression in BALB/c but not in C57BL/6 mice. A significant correlation was found between expression of AChE-S and AChE-R transcripts in the hippocampus and scanning behavior, but this was apparently unrelated to DFP treatment. The enhanced conditioned scanning in adults, following postnatal exposure to DFP, suggests long-term effects on the risk for anxiety disorders. The altered expression of AChE splice variant transcripts in the two strains did not account for the behavioral deficits, which were observed in both BALB/c and C57BL/6 strains.

Sex differences in PTSD resilience and susceptibility: Challenges for animal models of fear learning

PTSD occurs in only a small fraction of trauma-exposed individuals, but risk is twice as high in women as in men. The neurobiological basis for this discrepancy is not known, but the identification of biological determinants of resilience and susceptibility in each sex could lead to more targeted preventions and treatments. Animal models are a useful tool for dissecting the circuits and mechanisms that underlie the brain's response to stress, but the vast majority of this work has been developed and conducted in males. The limited work that does incorporate female animals is often inconsistent across labs and does not broadly reflect human populations in terms of female susceptibility to PTSD-like behaviors. In this review, we suggest that interpreting male vs. female comparisons in these models be approached carefully, since common behavioral outcome measures may in fact reflect distinct neural processes. Moreover, since the factors that determine resilience and susceptibility are likely at least in part distinct in men and women, models that take a within-sex approach to response variability may be more useful in identifying critical mechanisms for manipulation.

Delay and trace fear conditioning in C57BL/6 and DBA/2 mice: issues of measurement and performance

Strain comparison studies have been critical to the identification of novel genetic and molecular mechanisms in learning and memory. However, even within a single learning paradigm, the behavioral data for the same strain can vary greatly, making it difficult to form meaningful conclusions at both the behavioral and cellular level. In fear conditioning, there is a high level of variability across reports, especially regarding responses to the conditioned stimulus (CS). Here, we compare C57BL/6 and DBA/2 mice using delay fear conditioning, trace fear conditioning, and a nonassociative condition. Our data highlight both the significant strain differences apparent in these fear conditioning paradigms and the significant differences in conditioning type within each strain. We then compare our data to an extensive literature review of delay and trace fear conditioning in these two strains. Finally, we apply a number of commonly used baseline normalization approaches to compare how they alter the reported differences. Our findings highlight three major sources of variability in the fear conditioning literature: CS duration, number of CS presentations, and data normalization to baseline measures.