Infrared and Raman studies on renal stones: the use of second derivative infrared spectra

A hybrid thermal-biological recycling route for efficient extraction of metals and metalloids from end-of-life liquid crystal displays (LCDs)

Waste liquid crystal displays (LCDs) are one of the most substantial and rapidly growing e-waste streams that contain a notable amount of critical, precious, and toxic elements. This study presented a novel thermal-biological hybrid method for resource recovery from waste LCDs. Through the design of a multistage thermal treatment process with the addition of optimized 20 wt% B2O3 to waste, the LCD's glass structure was separated into two interconnected phases, resulting in the transfer of metals from the LCD's glass phase to the B2O3 phase that can solubilize in the acid solution. Following the thermal treatment step, the biometabolites of Aspergillus niger were used for bioleaching of In, Sr, Al, and As from the obtained thermally treated product. The optimal bioleaching parameters were a pulp density of 10 g/L, temperature of 70 °C, and leaching time of 2 days, which led to the highest extraction of 82.6% Al, 70.8% As, 64.5% In, and 36.2% Sr from thermally treated LCD waste, representing a multifold increase in Al, As, and Sr extraction levels compared to untreated waste. This study demonstrated that the proposed hybrid method could successfully overcome waste complexities and ensure effective element extraction from discarded LCDs.

Sample preparation and analysis protocols for the elucidation of structure and chemical distribution in kidney stones

Examining intact kidney stones both qualitatively and quantitatively can be difficult due to their size and fragility. Many modern analysis methods often lead to the destruction of the stone's structure during sample preparation. Preserving the structural integrity is crucial for accurately determining the chemical distribution of the components of kidney stones, which, in turn, improves our understanding of the disease's etiology. Infrared microspectroscopy and imaging play a vital role in revealing the stone's microstructure and component distribution. Consequently, this research focuses on investigating the impact of different sample preparation techniques on kidney stone analysis using infrared microspectroscopy. Specifically, it explores how polishing the surface of cross-sectioned stones influences the results. The polishing was performed utilizing abrasive discs and lapping films. A polishing device was also designed for the optimization of sample preparation. Additionally, this work involved a comparison of reflection infrared imaging with Attenuated Total Internal Reflection (ATR) infrared microspectroscopic imaging for the analysis of the microstructure of urinary stones.

Physicochemical understanding of biomineralization by molecular vibrational spectroscopy: From mechanism to nature

The process and mechanism of biomineralization and relevant physicochemical properties of mineral crystals are remarkably sophisticated multidisciplinary fields that include biology, chemistry, physics, and materials science. The components of the organic matter, structural construction of minerals, and related mechanical interaction, etc., could help to reveal the unique nature of the special mineralization process. Herein, the paper provides an overview of the biomineralization process from the perspective of molecular vibrational spectroscopy, including the physicochemical properties of biomineralized tissues, from physiological to applied mineralization. These physicochemical characteristics closely to the hierarchical mineralization process include biological crystal defects, chemical bonding, atomic doping, structural changes, and content changes in organic matter, along with the interface between biocrystals and organic matter as well as the specific mechanical effects for hardness and toughness. Based on those observations, the special physiological properties of mineralization for enamel and bone, as well as the possible mechanism of pathological mineralization and calcification such as atherosclerosis, tumor micro mineralization, and urolithiasis are also reviewed and discussed. Indeed, the clearly defined physicochemical properties of mineral crystals could pave the way for studies on the mechanisms and applications.

Matrix-Isolation Infrared Spectra and Electronic Structure Calculations for Dinitrogen Complexes with Uranium Trioxide Molecules UO3(η1-NN)1-4

Investigations of the interactions of uranium trioxide (UO₃) with other species are expected to provide a new perspective on its reaction and bonding behaviors. Herein, we present a combined matrix-isolation infrared spectroscopy and theoretical study of the geometries, vibrational frequencies, electronic structures, and bonding patterns for a series of dinitrogen (N₂) complexes with UO₃ moieties UO₃(η¹-NN)_1-4. The complexes are prepared by reactions of laser-ablated uranium atoms with O₂/N₂ mixtures or laser-ablated UO₃ molecules with N₂ in solid argon. UO₃(η¹-NN)_1-4 are classified as "nonclassical" metal-N₂ complexes with increased Δν(N₂) values according to the experimental observations and the computed blue-shifts of N-N stretching frequencies and N-N bond length contractions. Electronic structure analysis suggests that UO₃(η¹-NN)_1-4 are σ-only complexes with a total lack of π-back-donation. The energy decomposition analysis combined with natural orbitals for chemical valence calculations reveal that the bonding between the UO₃ moiety and N₂ ligands in UO₃(η¹-NN)_1-4 arises from the roughly equal electrostatic attractions and orbital mixings. The inspection of orbital interactions from pairwise contributions indicates that the strongest orbital stabilization comes from the σ-donations of the 4σ*- and 5σ-based ligand molecular orbitals (MOs) into the hybrid 7s/6d_x²-y² MO of the U center. The electron polarization induced by electrostatic effects in the N_inner ← N_outer direction provides complementary contributions to the orbital stabilization in UO₃(η¹-NN)_1-4. In addition, the reactions of UO₃ with N₂ ligands and the origination of the nonclassical behavior in UO₃(η¹-NN)_1-4 are discussed.

Raman chemical imaging, a new tool in kidney stone structure analysis: Case-study and comparison to Fourier Transform Infrared spectroscopy

BACKGROUND AND OBJECTIVES

The kidney stone's structure might provide clinical information in addition to the stone composition. The Raman chemical imaging is a technology used for the production of two-dimension maps of the constituents' distribution in samples. We aimed at determining the use of Raman chemical imaging in urinary stone analysis.

MATERIAL AND METHODS

Fourteen calculi were analyzed by Raman chemical imaging using a confocal Raman microspectrophotometer. They were selected according to their heterogeneous composition and morphology. Raman chemical imaging was performed on the whole section of stones. Once acquired, the data were baseline corrected and analyzed by MCR-ALS. Results were then compared to the spectra obtained by Fourier Transform Infrared spectroscopy.

RESULTS

Raman chemical imaging succeeded in identifying almost all the chemical components of each sample, including monohydrate and dihydrate calcium oxalate, anhydrous and dihydrate uric acid, apatite, struvite, brushite, and rare chemicals like whitlockite, ammonium urate and drugs. However, proteins couldn't be detected because of the huge autofluorescence background and the small concentration of these poor Raman scatterers. Carbapatite and calcium oxalate were correctly detected even when they represented less than 5 percent of the whole stones. Moreover, Raman chemical imaging provided the distribution of components within the stones: nuclei were accurately identified, as well as thin layers of other components. Conversion of dihydrate to monohydrate calcium oxalate was correctly observed in the centre of one sample. The calcium oxalate monohydrate had different Raman spectra according to its localization.

CONCLUSION

Raman chemical imaging showed a good accuracy in comparison with infrared spectroscopy in identifying components of kidney stones. This analysis was also useful in determining the organization of components within stones, which help locating constituents in low quantity, such as nuclei. However, this analysis is time-consuming, making it more suitable for research studies rather than routine analysis.

Label Free Detection of Sensitive Mid-Infrared Biomarkers of Glomerulonephritis in Urine Using Fourier Transform Infrared Spectroscopy

More reliable biomarkers using near-patient technologies are needed to improve early diagnosis and intervention for patients with renal disease. Infrared (IR) vibrational spectroscopy/microspectroscopy is an established analytical method that was first used in biomedical research over 20 years ago. With the advances in instrumentation, computational and mathematical techniques, this technology has now been applied to a variety of diseases; however, applications in nephrology are just beginning to emerge. In the present study, we used attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy to analyze urine samples collected from rodent models of inflammatory glomerulonephritis (GN) as well as from patients with crescentic GN, with the aim of identifying potential renal biomarkers; several characteristic mid-IR spectral markers were identified in urine samples. Specifically, a 1545 cm⁻¹ band increased in intensity with the progression and severity of GN in rats, mice and humans. Furthermore, its intensity declined significantly in response to corticosteroid treatment in nephritic rats. In conclusion, our results suggest that specific urinary FTIR biomarkers may provide a rapid, sensitive and novel non-invasive means of diagnosing inflammatory forms of GN, and for real-time monitoring of progress, and response to treatment.

Renal Graft Fibrosis and Inflammation Quantification by an Automated Fourier-Transform Infrared Imaging Technique

Renal interstitial fibrosis and interstitial active inflammation are the main histologic features of renal allograft biopsy specimens. Fibrosis is currently assessed by semiquantitative subjective analysis, and color image analysis has been developed to improve the reliability and repeatability of this evaluation. However, these techniques fail to distinguish fibrosis from constitutive collagen or active inflammation. We developed an automatic, reproducible Fourier-transform infrared (FTIR) imaging-based technique for simultaneous quantification of fibrosis and inflammation in renal allograft biopsy specimens. We generated and validated a classification model using 49 renal biopsy specimens and subsequently tested the robustness of this classification algorithm on 166 renal grafts. Finally, we explored the clinical relevance of fibrosis quantification using FTIR imaging by comparing results with renal function at 3 months after transplantation (M3) and the variation of renal function between M3 and M12. We showed excellent robustness for fibrosis and inflammation classification, with >90% of renal biopsy specimens adequately classified by FTIR imaging. Finally, fibrosis quantification by FTIR imaging correlated with renal function at M3, and the variation in fibrosis between M3 and M12 correlated well with the variation in renal function over the same period. This study shows that FTIR-based analysis of renal graft biopsy specimens is a reproducible and reliable label-free technique for quantifying fibrosis and active inflammation. This technique seems to be more relevant than digital image analysis and promising for both research studies and routine clinical practice.

Metals in Human Gall, Bladder, and Kidney Stones Based on an Electron Microprobe Investigation

Several particles of copper accompanied by a few particles of nickel, lead, and a compound composed of selenium containing minor Ni, Si, Cu, and Co were found in human gall, kidney, and bladder stones. The investigated particles occur as tiny grains, <10 µm in size, that are irregularly dispersed in the stones. Therefore, they were studied by scanning electron microscopy and qualitatively analyzed by energy dispersive system. One grain of copper contained a small amount of Ni and Zn, and some grains of nickel proved to contain Cr as trace element. Most of the discovered metals formed a single-phase grain. However, a few grains found in two gallstones were associated with inclusions of calcium and apatite. Based on the results presented in this contribution, we argue that most of the studied metals can be classified as endogenous particles, i.e., directly precipitated from the same fluids that formed their host human stones. This observation suggests that the precipitation and accumulation of metals in some human stones can be considered an efficient way to eliminate them from the human body.

Tetrazoles: calcium oxalate crystal growth modifiers

Metabolically stable tetrazole molecules are shown to impact calcium oxalate crystallization, thus tetrazoles can be used in investigating biological crystallization processes.