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Gutierrez‐Patricio S, Osman JR, Gonzalez‐Pimentel JL, Jurado V, Laiz L, Concepción AL, Saiz‐Jimenez C, Miller AZ. Microbiological exploration of the Cueva del Viento lava tube system in Tenerife, Canary Islands. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13245. [PMID: 38643985 PMCID: PMC11033209 DOI: 10.1111/1758-2229.13245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 03/15/2024] [Indexed: 04/23/2024]
Abstract
Cueva del Viento, located in the Canary Islands, Spain, is the Earth's sixth-longest lava tube, spanning 18,500 m, and was formed approximately 27,000 years ago. This complex volcanic cave system is characterized by a unique geomorphology, featuring an intricate network of galleries. Despite its geological significance, the geomicrobiology of Cueva del Viento remains largely unexplored. This study employed a combination of culture-dependent techniques and metabarcoding data analysis to gain a comprehensive understanding of the cave's microbial diversity. The 16S rRNA gene metabarcoding approach revealed that the coloured microbial mats (yellow, red and white) coating the cave walls are dominated by the phyla Actinomycetota, Pseudomonadota and Acidobacteriota. Of particular interest is the high relative abundance of the genus Crossiella, which is involved in urease-mediated biomineralization processes, along with the presence of genera associated with nitrogen cycling, such as Nitrospira. Culture-dependent techniques provided insights into the morphological characteristics of the isolated species and their potential metabolic activities, particularly for the strains Streptomyces spp., Paenarthrobacter sp. and Pseudomonas spp. Our findings underscore the potential of Cueva del Viento as an ideal environment for studying microbial diversity and for the isolation and characterization of novel bacterial species of biotechnological interest.
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Affiliation(s)
| | - Jorge R. Osman
- Instituto de Geología Económica Aplicada (GEA)Universidad de ConcepciónConcepciónChile
| | - José Luis Gonzalez‐Pimentel
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
- Laboratorio HERCULESUniversidade de ÉvoraÉvoraPortugal
| | - Valme Jurado
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
| | - Leonila Laiz
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
| | | | - Cesareo Saiz‐Jimenez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
| | - Ana Zélia Miller
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS‐CSIC)SevillaSpain
- Laboratorio HERCULESUniversidade de ÉvoraÉvoraPortugal
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Turrini P, Chebbi A, Riggio FP, Visca P. The geomicrobiology of limestone, sulfuric acid speleogenetic, and volcanic caves: basic concepts and future perspectives. Front Microbiol 2024; 15:1370520. [PMID: 38572233 PMCID: PMC10987966 DOI: 10.3389/fmicb.2024.1370520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Accepted: 03/07/2024] [Indexed: 04/05/2024] Open
Abstract
Caves are ubiquitous subterranean voids, accounting for a still largely unexplored surface of the Earth underground. Due to the absence of sunlight and physical segregation, caves are naturally colonized by microorganisms that have developed distinctive capabilities to thrive under extreme conditions of darkness and oligotrophy. Here, the microbiomes colonizing three frequently studied cave types, i.e., limestone, sulfuric acid speleogenetic (SAS), and lava tubes among volcanic caves, have comparatively been reviewed. Geological configurations, nutrient availability, and energy flows in caves are key ecological drivers shaping cave microbiomes through photic, twilight, transient, and deep cave zones. Chemoheterotrophic microbial communities, whose sustenance depends on nutrients supplied from outside, are prevalent in limestone and volcanic caves, while elevated inorganic chemical energy is available in SAS caves, enabling primary production through chemolithoautotrophy. The 16S rRNA-based metataxonomic profiles of cave microbiomes were retrieved from previous studies employing the Illumina platform for sequencing the prokaryotic V3-V4 hypervariable region to compare the microbial community structures from different cave systems and environmental samples. Limestone caves and lava tubes are colonized by largely overlapping bacterial phyla, with the prevalence of Pseudomonadota and Actinomycetota, whereas the co-dominance of Pseudomonadota and Campylobacterota members characterizes SAS caves. Most of the metataxonomic profiling data have so far been collected from the twilight and transient zones, while deep cave zones remain elusive, deserving further exploration. Integrative approaches for future geomicrobiology studies are suggested to gain comprehensive insights into the different cave types and zones. This review also poses novel research questions for unveiling the metabolic and genomic capabilities of cave microorganisms, paving the way for their potential biotechnological applications.
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Affiliation(s)
- Paolo Turrini
- Department of Science, Roma Tre University, Rome, Italy
| | - Alif Chebbi
- Department of Science, Roma Tre University, Rome, Italy
| | | | - Paolo Visca
- Department of Science, Roma Tre University, Rome, Italy
- National Biodiversity Future Center, Palermo, Italy
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Palma V, González-Pimentel JL, Jimenez-Morillo NT, Sauro F, Gutiérrez-Patricio S, De la Rosa JM, Tomasi I, Massironi M, Onac BP, Tiago I, González-Pérez JA, Laiz L, Caldeira AT, Cubero B, Miller AZ. Connecting molecular biomarkers, mineralogical composition, and microbial diversity from Mars analog lava tubes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 913:169583. [PMID: 38154629 DOI: 10.1016/j.scitotenv.2023.169583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 12/13/2023] [Accepted: 12/20/2023] [Indexed: 12/30/2023]
Abstract
Lanzarote (Canary Islands, Spain) is one of the best terrestrial analogs to Martian volcanology. Particularly, Lanzarote lava tubes may offer access to recognizably preserved chemical and morphological biosignatures valuable for astrobiology. By combining microbiological, mineralogical, and organic geochemistry tools, an in-depth characterization of speleothems and associated microbial communities in lava tubes of Lanzarote is provided. The aim is to untangle the underlying factors influencing microbial colonization in Earth's subsurface to gain insight into the possibility of similar subsurface microbial habitats on Mars and to identify biosignatures preserved in lava tubes unequivocally. The microbial communities with relevant representativeness comprise chemoorganotrophic, halophiles, and/or halotolerant bacteria that have evolved as a result of the surrounding oceanic environmental conditions. Many of these bacteria have a fundamental role in reshaping cave deposits due to their carbonatogenic ability, leaving behind an organic record that can provide evidence of past or present life. Based on functional profiling, we infer that Crossiella is involved in fluorapatite precipitation via urea hydrolysis and propose its Ca-rich precipitates as compelling biosignatures valuable for astrobiology. In this sense, analytical pyrolysis, stable isotope analysis, and chemometrics were conducted to characterize the complex organic fraction preserved in the speleothems and find relationships among organic families, microbial taxa, and precipitated minerals. We relate organic compounds with subsurface microbial taxa, showing that organic families drive the microbiota of Lanzarote lava tubes. Our data indicate that bacterial communities are important contributors to biomarker records in volcanic-hosted speleothems. Within them, the lipid fraction primarily consists of low molecular weight n-alkanes, α-alkenes, and branched-alkenes, providing further evidence that microorganisms serve as the origin of organic matter in these formations. The ongoing research in Lanzarote's lava tubes will help develop protocols, routines, and predictive models that could provide guidance on choosing locations and methodologies for searching potential biosignatures on Mars.
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Affiliation(s)
- Vera Palma
- HERCULES Laboratory, University of Évora, Évora, Portugal
| | | | | | - Francesco Sauro
- Department of Earth Sciences and Environmental Geology, University of Bologna, Italy
| | | | - José M De la Rosa
- Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC), Sevilla, Spain
| | - Ilaria Tomasi
- Geosciences Department, University of Padova, Padova, Italy
| | | | - Bogdan P Onac
- Karst Research Group, School of Geosciences, University of South Florida, Tampa, FL, USA; Emil G. Racoviță Institute, Babeș-Bolyai University, Cluj-Napoca, Romania
| | - Igor Tiago
- CFE-Center for Functional Ecology, Department of Life Sciences, University of Coimbra, Coimbra, Portugal
| | - José A González-Pérez
- Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC), Sevilla, Spain
| | - Leonila Laiz
- Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC), Sevilla, Spain
| | - Ana T Caldeira
- HERCULES Laboratory, University of Évora, Évora, Portugal
| | - Beatriz Cubero
- Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC), Sevilla, Spain
| | - Ana Z Miller
- HERCULES Laboratory, University of Évora, Évora, Portugal; Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC), Sevilla, Spain.
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Sabella G, Nicolosi G. A New Species of Bryaxis (Coleoptera: Staphylinidae: Pselaphinae) from Mount Etna (Sicily, Italy) and Notes on Its Ecology and Distribution. Animals (Basel) 2023; 13:2941. [PMID: 37760341 PMCID: PMC10525367 DOI: 10.3390/ani13182941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 08/22/2023] [Accepted: 09/13/2023] [Indexed: 09/29/2023] Open
Abstract
A new species of the subfamily Pselaphinae (Coleoptera: Staphylinidae) has been discovered on Mount Etna (Sicily, Italy) and is described herein as Bryaxis aetnensis sp. nov. The new species is closely associated with the Bryaxis difficilis group, a highly homogeneous group of species living in the regions of Sicily and Sardinia. Diagnostic features and distribution of Sicilian species of this group are treated and illustrated herein. Bryaxis aetnensis sp. nov. exhibits similarities to B. marinae but can be distinguished by the darker color, longer antennal scape and terminal palpomere, and in the aedeagus morphology. The distribution of B. aetnensis sp. nov. spans a wide altitudinal range, demonstrating a remarkable climatic tolerance across the slopes and diverse habitats of Mount Etna. This broad tolerance reflects the species' probable high ecological plasticity, which may also contribute to the observed morphological variability among individuals from different sampling sites. The significance of this new discovery on Mount Etna highlights the need to intensify sampling efforts in the region. Strengthening protection for these unexplored environments is crucial, and it also aids in unraveling biogeographic questions about the fauna inhabiting the area. As a relatively young volcanic environment, species colonization has occurred recently, making it an intriguing subject of investigation.
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Affiliation(s)
- Giorgio Sabella
- Department of Biological, Geological and Environmental Sciences, University of Catania, Via Androne 81, 95124 Catania, Italy
| | - Giuseppe Nicolosi
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Torino, Italy;
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