1
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Mir B, Yang J, Li Z, Wang L, Ali V, Hu X, Zhang H. Review on recent advances in the properties, production and applications of microbial dextranases. World J Microbiol Biotechnol 2023; 39:242. [PMID: 37400664 DOI: 10.1007/s11274-023-03691-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 06/28/2023] [Indexed: 07/05/2023]
Abstract
Dextranase is a type of hydrolase that is responsible for catalyzing the breakdown of high-molecular-weight dextran into low-molecular-weight polysaccharides. This process is called dextranolysis. A select group of bacteria and fungi, including yeasts and likely certain complex eukaryotes, produce dextranase enzymes as extracellular enzymes that are released into the environment. These enzymes join dextran's α-1,6 glycosidic bonds to make glucose, exodextranases, or isomalto-oligosaccharides (endodextranases). Dextranase is an enzyme that has a wide variety of applications, some of which include the sugar business, the production of human plasma replacements, the treatment of dental plaque and its protection, and the creation of human plasma replacements. Because of this, the quantity of studies carried out on worldwide has steadily increased over the course of the past couple of decades. The major focus of this study is on the most current advancements in the production, administration, and properties of microbial dextranases. This will be done throughout the entirety of the review.
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Affiliation(s)
- Baiza Mir
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China
| | - Jingwen Yang
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China.
| | - Zhiwei Li
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China
| | - Lei Wang
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China
| | - Vilayat Ali
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China
| | - Xueqin Hu
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China
| | - Hongbin Zhang
- College of Food and Biological Engineering, Hefei University of Technology, Hefei, China.
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2
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Hu X, Xia B, Ru W, Zhang Y, Yang J, Zhang H. Research progress on structure and catalytic mechanism of dextranase. EFOOD 2023. [DOI: 10.1002/efd2.60] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Affiliation(s)
- Xue‐Qin Hu
- School of Food and Biological Engineering Hefei University of Technology Hefei China
| | - Bing‐Bing Xia
- School of Food and Biological Engineering Hefei University of Technology Hefei China
| | - Wei‐Juan Ru
- School of Food and Biological Engineering Hefei University of Technology Hefei China
| | - Yu‐Xin Zhang
- School of Food and Biological Engineering Hefei University of Technology Hefei China
| | - Jing‐Wen Yang
- School of Food and Biological Engineering Hefei University of Technology Hefei China
| | - Hong‐Bin Zhang
- School of Food and Biological Engineering Hefei University of Technology Hefei China
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3
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Wei Z, Chen J, Xu L, Liu N, Yang J, Wang S. Improving the thermostability of GH49 dextranase AoDex by site-directed mutagenesis. AMB Express 2023; 13:7. [PMID: 36656394 PMCID: PMC9852402 DOI: 10.1186/s13568-023-01513-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Accepted: 01/08/2023] [Indexed: 01/20/2023] Open
Abstract
As an indispensable enzyme for the hydrolysis of dextran, dextranase has been widely used in the fields of food and medicine. It should be noted that the weak thermostability of dextranase has become a restricted factor for industrial applications. This study aims to improve the thermostability of dextranase AoDex in glycoside hydrolase (GH) family 49 that derived from Arthrobacter oxydans KQ11. Some mutants were predicted and constructed based on B-factor analysis, PoPMuSiC and HotMuSiC algorithms, and four mutants exhibited higher heat resistance. Compared with the wild-type, mutant S357P showed the best improved thermostability with a 5.4-fold increase of half-life at 60 °C, and a 2.1-fold increase of half-life at 65 °C. Furthermore, S357V displayed the most obvious increase in enzymatic activity and thermostability simultaneously. Structural modeling analysis indicated that the improved thermostability of mutants might be attributed to the introduction of proline and hydrophobic effects, which generated the rigid optimization of the structural conformation. These results illustrated that it was effective to improve the thermostability of dextranase AoDex by rational design and site-directed mutagenesis. The thermostable mutant of dextranase AoDex has potential application value, and it can also provide references for engineering other thermostable dextranases of the GH49 family.
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Affiliation(s)
- Zhen Wei
- grid.443480.f0000 0004 1800 0658Jiangsu Key Laboratory of Marine Bioresources and Environment, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, 222005 China ,grid.443480.f0000 0004 1800 0658Jiangsu Institute of Marine Resources Development, Jiangsu Ocean University, Lianyungang, 222005 China
| | - Jinling Chen
- grid.443480.f0000 0004 1800 0658School of Food Science and Engineering, Jiangsu Ocean University, Lianyungang, 222005 China
| | - Linxiang Xu
- grid.443480.f0000 0004 1800 0658Jiangsu Key Laboratory of Marine Bioresources and Environment, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, 222005 China ,grid.443480.f0000 0004 1800 0658Jiangsu Institute of Marine Resources Development, Jiangsu Ocean University, Lianyungang, 222005 China
| | - Nannan Liu
- grid.443480.f0000 0004 1800 0658Jiangsu Key Laboratory of Marine Bioresources and Environment, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, 222005 China ,grid.443480.f0000 0004 1800 0658Jiangsu Institute of Marine Resources Development, Jiangsu Ocean University, Lianyungang, 222005 China
| | - Jie Yang
- grid.443480.f0000 0004 1800 0658Jiangsu Key Laboratory of Marine Bioresources and Environment, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, 222005 China ,grid.443480.f0000 0004 1800 0658School of Food Science and Engineering, Jiangsu Ocean University, Lianyungang, 222005 China
| | - Shujun Wang
- grid.443480.f0000 0004 1800 0658Jiangsu Key Laboratory of Marine Bioresources and Environment, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, 222005 China ,grid.443480.f0000 0004 1800 0658School of Food Science and Engineering, Jiangsu Ocean University, Lianyungang, 222005 China
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4
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Barzkar N, Babich O, Das R, Sukhikh S, Tamadoni Jahromi S, Sohail M. Marine Bacterial Dextranases: Fundamentals and Applications. Molecules 2022; 27:molecules27175533. [PMID: 36080300 PMCID: PMC9458216 DOI: 10.3390/molecules27175533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 08/18/2022] [Accepted: 08/22/2022] [Indexed: 11/16/2022] Open
Abstract
Dextran, a renewable hydrophilic polysaccharide, is nontoxic, highly stable but intrinsically biodegradable. The α-1, 6 glycosidic bonds in dextran are attacked by dextranase (E.C. 3.2.1.11) which is an inducible enzyme. Dextranase finds many applications such as, in sugar industry, in the production of human plasma substitutes, and for the treatment and prevention of dental plaque. Currently, dextranases are obtained from terrestrial fungi which have longer duration for production but not very tolerant to environmental conditions and have safety concerns. Marine bacteria have been proposed as an alternative source of these enzymes and can provide prospects to overcome these issues. Indeed, marine bacterial dextranases are reportedly more effective and suitable for dental caries prevention and treatment. Here, we focused on properties of dextran, properties of dextran—hydrolyzing enzymes, particularly from marine sources and the biochemical features of these enzymes. Lastly the potential use of these marine bacterial dextranase to remove dental plaque has been discussed. The review covers dextranase-producing bacteria isolated from shrimp, fish, algae, sea slit, and sea water, as well as from macro- and micro fungi and other microorganisms. It is common knowledge that dextranase is used in the sugar industry; produced as a result of hydrolysis by dextranase and have prebiotic properties which influence the consistency and texture of food products. In medicine, dextranases are used to make blood substitutes. In addition, dextranase is used to produce low molecular weight dextran and cytotoxic dextran. Furthermore, dextranase is used to enhance antibiotic activity in endocarditis. It has been established that dextranase from marine bacteria is the most preferable for removing plaque, as it has a high enzymatic activity. This study lays the groundwork for the future design and development of different oral care products, based on enzymes derived from marine bacteria.
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Affiliation(s)
- Noora Barzkar
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, Bandar Abbas 74576, Iran
- Correspondence: or
| | - Olga Babich
- Institute of Living Systems, Immanuel Kant Baltic Federal University, 236016 Kaliningrad, Russia
| | - Rakesh Das
- Department of Paraclinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences (NMBU), 1432 Ås, Norway
| | - Stanislav Sukhikh
- Institute of Living Systems, Immanuel Kant Baltic Federal University, 236016 Kaliningrad, Russia
| | - Saeid Tamadoni Jahromi
- Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute, Agricultural Research Education and Extension Organization (AREEO), Bandar Abbas 14578, Iran
| | - Muhammad Sohail
- Department of Microbiology, University of Karachi, Karachi 75270, Pakistan
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5
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Martínez D, Menéndez C, Chacón O, Fuentes AD, Borges D, Sobrino A, Ramírez R, Pérez ER, Hernández L. Removal of bacterial dextran in sugarcane juice by Talaromyces minioluteus dextranase expressed constitutively in Pichia pastoris. J Biotechnol 2021; 333:10-20. [PMID: 33901619 DOI: 10.1016/j.jbiotec.2021.04.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Revised: 04/15/2021] [Accepted: 04/18/2021] [Indexed: 11/27/2022]
Abstract
A gene construct encoding the mature region of Talaromyces minioluteus dextranase (EC 3.2.1.11) fused to the Saccharomyces cerevisiae SUC2 signal sequence was expressed in Pichia pastoris under the constitutive glyceraldehyde 3-phosphate dehydrogenase promoter (pGAP). The increase of the transgene dosage from one to two and four copies enhanced proportionally the extracellular yield of the recombinant enzyme (r-TmDEX) without inhibiting cell growth. The volumetric productivity of the four-copy clone in fed batch fermentation (51 h) using molasses as carbon source was 1706 U/L/h. The secreted N-glycosylated r-TmDEX was optimally active at pH 4.5-5.5 and temperature 50-60 °C. The addition of sucrose (600 g/L) as a stabilizer retained intact the r-TmDEX activity after 1-h incubation at 50-60 °C and pH 5.5. Bacterial dextran in deteriorated sugarcane juice was completely removed by applying a crude preparation of secreted r-TmDEX. The high yield of r-TmDEX in methanol-free cultures and the low cost of the fed batch fermentation make the P. pastoris pGAP-based expression system appropriate for the large scale production of dextranase and its use for dextran removal at sugar mills.
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Affiliation(s)
- Duniesky Martínez
- Laboratorio de Fermentaciones, Centro de Ingeniería Genética y Biotecnología de Sancti Spíritus (CIGBSS), Circunvalante Norte S/N, Olivos 3, Apartado Postal 83, Sancti Spíritus, 60200, Cuba
| | - Carmen Menéndez
- Grupo Tecnología de Enzimas, Dirección de Investigaciones Agropecuarias, Centro de Ingeniería Genética y Biotecnología (CIGB), Ave 31 entre 158 y 190, Apartado Postal 6162, Habana, 10600, Cuba
| | - Osmani Chacón
- Grupo Tecnología de Enzimas, Dirección de Investigaciones Agropecuarias, Centro de Ingeniería Genética y Biotecnología (CIGB), Ave 31 entre 158 y 190, Apartado Postal 6162, Habana, 10600, Cuba
| | - Alejandro D Fuentes
- Grupo Virología de Plantas, Dirección de Investigaciones Agropecuarias, Centro de Ingeniería Genética y Biotecnología (CIGB), Ave 31 entre 158 y 190, Apartado Postal 6162, Habana, 10600, Cuba
| | - Dalia Borges
- Laboratorio de Fermentaciones, Centro de Ingeniería Genética y Biotecnología de Sancti Spíritus (CIGBSS), Circunvalante Norte S/N, Olivos 3, Apartado Postal 83, Sancti Spíritus, 60200, Cuba
| | - Alina Sobrino
- Laboratorio de Fermentaciones, Centro de Ingeniería Genética y Biotecnología de Sancti Spíritus (CIGBSS), Circunvalante Norte S/N, Olivos 3, Apartado Postal 83, Sancti Spíritus, 60200, Cuba
| | - Ricardo Ramírez
- Grupo Tecnología de Enzimas, Dirección de Investigaciones Agropecuarias, Centro de Ingeniería Genética y Biotecnología (CIGB), Ave 31 entre 158 y 190, Apartado Postal 6162, Habana, 10600, Cuba
| | - Enrique R Pérez
- Laboratorio de Fermentaciones, Centro de Ingeniería Genética y Biotecnología de Sancti Spíritus (CIGBSS), Circunvalante Norte S/N, Olivos 3, Apartado Postal 83, Sancti Spíritus, 60200, Cuba
| | - Lázaro Hernández
- Grupo Tecnología de Enzimas, Dirección de Investigaciones Agropecuarias, Centro de Ingeniería Genética y Biotecnología (CIGB), Ave 31 entre 158 y 190, Apartado Postal 6162, Habana, 10600, Cuba.
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6
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Ding Y, Zhang H, Wang X, Zu H, Wang C, Dong D, Lyu M, Wang S. Immobilization of Dextranase on Nano-Hydroxyapatite as a Recyclable Catalyst. MATERIALS (BASEL, SWITZERLAND) 2020; 14:E130. [PMID: 33396810 PMCID: PMC7796272 DOI: 10.3390/ma14010130] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 12/23/2020] [Accepted: 12/25/2020] [Indexed: 01/24/2023]
Abstract
The immobilization technology provides a potential pathway for enzyme recycling. Here, we evaluated the potential of using dextranase immobilized onto hydroxyapatite nanoparticles as a promising inorganic material. The optimal immobilization temperature, reaction time, and pH were determined to be 25 °C, 120 min, and pH 5, respectively. Dextranase could be loaded at 359.7 U/g. The immobilized dextranase was characterized by field emission gun-scanning electron microscope (FEG-SEM), X-ray diffraction (XRD), and Fourier-transformed infrared spectroscopy (FT-IR). The hydrolysis capacity of the immobilized enzyme was maintained at 71% at the 30th time of use. According to the constant temperature acceleration experiment, it was estimated that the immobilized dextranase could be stored for 99 days at 20 °C, indicating that the immobilized enzyme had good storage properties. Sodium chloride and sodium acetic did not desorb the immobilized dextranase. In contrast, dextranase was desorbed by sodium fluoride and sodium citrate. The hydrolysates were 79% oligosaccharides. The immobilized dextranase could significantly and thoroughly remove the dental plaque biofilm. Thus, immobilized dextranase has broad potential application in diverse fields in the future.
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Affiliation(s)
- Yanshuai Ding
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Hao Zhang
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Xuelian Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Hangtian Zu
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Cang Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Dongxue Dong
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Mingsheng Lyu
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
- Collaborative Innovation Center of Modern Biological Manufacturing, Anhui University, Hefei 230039, China
| | - Shujun Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang 222005, China; (Y.D.); (H.Z.); (X.W.); (H.Z.); (C.W.); (D.D.); (M.L.)
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
- Collaborative Innovation Center of Modern Biological Manufacturing, Anhui University, Hefei 230039, China
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Zhao J, Wang L, Wei X, Li K, Liu J. Food-Grade Expression and Characterization of a Dextranase from Chaetomium gracile Suitable for Sugarcane Juice Clarification. Chem Biodivers 2020; 18:e2000797. [PMID: 33245200 DOI: 10.1002/cbdv.202000797] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 11/26/2020] [Indexed: 11/09/2022]
Abstract
The microbial production of dextranase using cheap carbon sources is beneficial to solve the economic loss caused by the accumulation of dextran in syrup. A food-grade microbial cell factory was constructed by introducing the dextranase encoding gene DEX from Chaetomium gracile to the chromosome of Bacillus subtilis, and the antibiotic resistance marker gene was subsequently deleted via the Cre/loxP strategy. The dual-promoter system with a sequentially arranged constitutive P43 promoter resulted in an 85 % increase in DEX expression. Under the optimal fermentation conditions of 10 g/L maltose, 15 g/L casein, 1 g/L Na2 HPO4 , 1 g/L FeSO4 and 8 g/L NaCl, DEX activity was increased from 2.625 to 64.34 U/mL. Recombinant DEX was purified 5.98-fold with a recovery ratio of 26.67 % and specific activity of 3935.02 U/mg. Enzyme activity was optimal at 55 °C and pH 5.0 and remained 80.34 % and 71.36 % of the initial activity at 55 °C and pH 4.0 after 60 min, respectively. The enzyme possessed high activity in the presence of Co2+ , while Ag+ showed the strongest inhibition ability. The optimal substrate was 20 g/L dextran T-2000. The findings could facilitate the low-cost, large-scale production of food-grade DEX for use in the sugar industry.
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Affiliation(s)
- Jingyi Zhao
- College of Light Industry and Food Engineering, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China
| | - Leyi Wang
- College of Light Industry and Food Engineering, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China
| | - Xin Wei
- College of Light Industry and Food Engineering, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China
| | - Kai Li
- College of Light Industry and Food Engineering, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China.,Sugar Industry Collaborative Innovation Center, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China
| | - Jidong Liu
- College of Light Industry and Food Engineering, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China.,Sugar Industry Collaborative Innovation Center, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China
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Liu X, Deng T, Liu X, Lai X, Feng Y, Lyu M, Wang S. Isomalto-Oligosaccharides Produced by Endodextranase Shewanellasp. GZ-7 From Sugarcane Plants. Nat Prod Commun 2020. [DOI: 10.1177/1934578x20953286] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Oligosaccharides have important alimental and medical applications. Dextranase has been used to produce isomalto-oligosaccharides (IMOs). In this study, we isolated dextranase-producing bacteria from sugarcane-cultivated soil. Identification of the isolate based on its phenotypical, physiological, and biochemical characteristics, as well as 16S ribosomal deoxyribonucleic acid gene sequencing yielded Shewanella sp. strain GZ-7. The molecular weight of the dextranase produced by this strain was 100-135 kDa. The optimum temperature and pH for dextranase production were 40 °C and 7.5, respectively. The enzyme was found to be stable at the pH range of 6.0-8.0 and the temperature range of 20 °C-40 °C. Thin-layer chromatography and high-performance liquid chromatography of the enzymolysis products of the substrate confirmed the enzyme to be endodextranase. Under the optimal conditions, the ratio of IMOs could reach 91.8% of the hydrolyzate. The final products were found to efficiently scavenge the 2,2-diphenyl-1-picrylhydrazyl, hydroxyl, and superoxide anion radicals. In general, dextranase and hydrolyzates have high potential prospects for application in the future.
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Affiliation(s)
- Xin Liu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
| | - Tian Deng
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
| | - Xueqin Liu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
| | - Xiaohua Lai
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
| | - Yanli Feng
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
| | - Mingsheng Lyu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
- Collaborative Innovation Center of Modern Biological Manufacturing, Anhui University, Hefei, P. R. China
| | - Shujun Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/ Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, P. R. China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, P. R. China
- Collaborative Innovation Center of Modern Biological Manufacturing, Anhui University, Hefei, P. R. China
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9
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Yang L, Zhou N, Tian Y. Characterization and application of dextranase produced by Chaetomium globosum mutant through combined application of atmospheric and room temperature plasma and ethyl methyl sulfone. Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.06.026] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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10
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Liu H, Ren W, Ly M, Li H, Wang S. Characterization of an Alkaline GH49 Dextranase from Marine Bacterium Arthrobacter oxydans KQ11 and Its Application in the Preparation of Isomalto-Oligosaccharide. Mar Drugs 2019; 17:md17080479. [PMID: 31430863 PMCID: PMC6723167 DOI: 10.3390/md17080479] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Revised: 08/06/2019] [Accepted: 08/09/2019] [Indexed: 11/16/2022] Open
Abstract
A GH49 dextranase gene DexKQ was cloned from marine bacteria Arthrobacter oxydans KQ11. It was recombinantly expressed using an Escherichia coli system. Recombinant DexKQ dextranase of 66 kDa exhibited the highest catalytic activity at pH 9.0 and 55 °C. kcat/Km of recombinant DexKQ at the optimum condition reached 3.03 s−1 μM−1, which was six times that of commercial dextranase (0.5 s−1 μM−1). DexKQ possessed a Km value of 67.99 µM against dextran T70 substrate with 70 kDa molecular weight. Thin-layer chromatography (TLC) analysis showed that main hydrolysis end products were isomalto-oligosaccharide (IMO) including isomaltotetraose, isomaltopantose, and isomaltohexaose. When compared with glucose, IMO could significantly improve growth of Bifidobacterium longum and Lactobacillus rhamnosus and inhibit growth of Escherichia coli and Staphylococcus aureus. This is the first report of dextranase from marine bacteria concerning recombinant expression and application in isomalto-oligosaccharide preparation.
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Affiliation(s)
- Hongfei Liu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Wei Ren
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China
- Collaborative Innovation Center of Modern Bio-Manufacture, Anhui University, Hefei 230039, China
| | - Mingsheng Ly
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China
- Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China
| | - Haifeng Li
- Medical College, Hangzhou Normal University, Hangzhou 311121, China.
| | - Shujun Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China.
- Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China.
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11
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A novel intracellular dextranase derived from Paenibacillus sp. 598K with an ability to degrade cycloisomaltooligosaccharides. Appl Microbiol Biotechnol 2019; 103:6581-6592. [DOI: 10.1007/s00253-019-09965-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Revised: 06/02/2019] [Accepted: 06/04/2019] [Indexed: 10/26/2022]
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12
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Yang SJ, Choi SJ, Park BR, Kim YM. Thermostable CITase from Thermoanaerobacter thermocopriae shows negative cooperativity. Biotechnol Lett 2019; 41:625-632. [DOI: 10.1007/s10529-019-02666-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 03/22/2019] [Indexed: 10/27/2022]
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13
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Purification, Characterization and Degradation Performance of a Novel Dextranase from Penicillium cyclopium CICC-4022. Int J Mol Sci 2019; 20:ijms20061360. [PMID: 30889875 PMCID: PMC6471568 DOI: 10.3390/ijms20061360] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 03/04/2019] [Accepted: 03/07/2019] [Indexed: 11/17/2022] Open
Abstract
A novel dextranase was purified from Penicillium cyclopium CICC-4022 by ammonium sulfate fractional precipitation and gel filtration chromatography. The effects of temperature, pH and some metal ions and chemicals on dextranase activity were investigated. Subsequently, the dextranase was used to produce dextran with specific molecular mass. Weight-average molecular mass (Mw) and the ratio of weight-average molecular mass/number-average molecular mass, or polydispersity index (Mw/Mn), of dextran were measured by multiple-angle laser light scattering (MALS) combined with gel permeation chromatography (GPC). The dextranase was purified to 16.09-fold concentration; the recovery rate was 29.17%; and the specific activity reached 350.29 U/mg. Mw of the dextranase was 66 kDa, which is similar to dextranase obtained from other Penicillium species reported previously. The highest activity was observed at 55 °C and a pH of 5.0. This dextranase was identified as an endodextranase, which specifically degraded the α-1,6 glucosidic bonds of dextran. According to metal ion dependency tests, Li+, Na+ and Fe2+ were observed to effectively improve the enzymatic activity. In particular, Li+ could improve the activity to 116.28%. Furthermore, the dextranase was efficient at degrading dextran and the degradation rate can be well controlled by the dextranase activity, substrate concentration and reaction time. Thus, our results demonstrate the high potential of this dextranase from Penicillium cyclopium CICC-4022 as an efficient enzyme to produce specific clinical dextrans.
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14
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Purification, characterization, and biocatalytic potential of a novel dextranase from Chaetomium globosum. Biotechnol Lett 2018; 40:1407-1418. [DOI: 10.1007/s10529-018-2599-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 07/25/2018] [Indexed: 10/28/2022]
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15
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Zhang YQ, Li RH, Zhang HB, Wu M, Hu XQ. Purification, characterization, and application of a thermostable dextranase from Talaromyces pinophilus. ACTA ACUST UNITED AC 2017; 44:317-327. [DOI: 10.1007/s10295-016-1886-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2016] [Accepted: 12/14/2016] [Indexed: 11/25/2022]
Abstract
Abstract
Dextranase can hydrolyze dextran to low-molecular-weight polysaccharides, which have important medical applications. In the study, dextranase-producing strains were screened from various soil sources. The strain H6 was identified as Talaromyces pinophilus by a standard ITS rDNA analysis. Crude dextranase was purified by ammonium sulfate fractionation and Sepharose 6B chromatography, which resulted in a 6.69-fold increase in the specific activity and an 11.27% recovery. The enzyme was 58 kDa, lower than most dextranase, with an optimum temperature of 45 °C and an optimum pH of 6.0, and identified as an endodextranase. It was steady over a pH range from 3.0 to 10.0 and had reasonable thermal stability. The dextranase activity was increased by urea, which enhanced its activity to 115.35% and was conducive to clinical dextran production. Therefore, T. pinophilus H6 dextranase could show its superiority in practical applications.
Graphical Abstract
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Affiliation(s)
- Yu-Qi Zhang
- grid.256896.6 Department of Pharmaceutical Engineering, School of Biological and Medical Engineering Hefei University of Technology 230009 Hefei People’s Republic of China
| | - Ruo-Han Li
- grid.256896.6 Department of Pharmaceutical Engineering, School of Biological and Medical Engineering Hefei University of Technology 230009 Hefei People’s Republic of China
| | - Hong-Bin Zhang
- grid.256896.6 Department of Pharmaceutical Engineering, School of Biological and Medical Engineering Hefei University of Technology 230009 Hefei People’s Republic of China
| | - Min Wu
- grid.256896.6 Department of Pharmaceutical Engineering, School of Biological and Medical Engineering Hefei University of Technology 230009 Hefei People’s Republic of China
| | - Xue-Qin Hu
- grid.256896.6 Department of Pharmaceutical Engineering, School of Biological and Medical Engineering Hefei University of Technology 230009 Hefei People’s Republic of China
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16
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Wang X, Cheng H, Lu M, Fang Y, Jiao Y, Li W, Zhao G, Wang S. Dextranase from Arthrobacter oxydans KQ11-1 inhibits biofilm formation by polysaccharide hydrolysis. BIOFOULING 2016; 32:1223-1233. [PMID: 27762637 DOI: 10.1080/08927014.2016.1239722] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Dental plaque is a biofilm of water-soluble and water-insoluble polysaccharides, produced primarily by Streptococcus mutans. Dextranase can inhibit biofilm formation. Here, a dextranase gene from the marine microorganism Arthrobacter oxydans KQ11-1 is described, and cloned and expressed using E. coli DH5α competent cells. The recombinant enzyme was then purified and its properties were characterized. The optimal temperature and pH were determined to be 60°C and 6.5, respectively. High-performance liquid chromatography data show that the final hydrolysis products were glucose, maltose, maltotriose, and maltotetraose. Thus, dextranase can inhibit the adhesive ability of S. mutans. The minimum biofilm inhibition and reduction concentrations (MBIC50 and MBRC50) of dextranase were 2 U ml-1 and 5 U ml-1, respectively. Scanning electron microscopy and confocal laser scanning microscope (CLSM) observations confirmed that dextranase inhibited biofilm formation and removed previously formed biofilms.
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Affiliation(s)
- Xiaobei Wang
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
- b Key Laboratory of Marine Biology , Nanjing Agricultural University , Nanjing , Jiangsu , PR China
| | - Huaixu Cheng
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
- c Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening , Huaihai Institute of Technology , Lianyungang , PR China
- d Co-Innovation Center of Jiangsu Marine Bio-industry Technology , Huaihai Institute of Technology , Lianyungang , PR China
| | - Mingsheng Lu
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
- c Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening , Huaihai Institute of Technology , Lianyungang , PR China
- d Co-Innovation Center of Jiangsu Marine Bio-industry Technology , Huaihai Institute of Technology , Lianyungang , PR China
| | - Yaowei Fang
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
- c Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening , Huaihai Institute of Technology , Lianyungang , PR China
- d Co-Innovation Center of Jiangsu Marine Bio-industry Technology , Huaihai Institute of Technology , Lianyungang , PR China
| | - Yuliang Jiao
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
- c Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening , Huaihai Institute of Technology , Lianyungang , PR China
- d Co-Innovation Center of Jiangsu Marine Bio-industry Technology , Huaihai Institute of Technology , Lianyungang , PR China
| | - Weijuan Li
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
| | - Gengmao Zhao
- b Key Laboratory of Marine Biology , Nanjing Agricultural University , Nanjing , Jiangsu , PR China
- d Co-Innovation Center of Jiangsu Marine Bio-industry Technology , Huaihai Institute of Technology , Lianyungang , PR China
| | - Shujun Wang
- a Marine Resources Development Institute of Jiangsu , Lianyungang , PR China
- c Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening , Huaihai Institute of Technology , Lianyungang , PR China
- d Co-Innovation Center of Jiangsu Marine Bio-industry Technology , Huaihai Institute of Technology , Lianyungang , PR China
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17
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Suzuki N, Kishine N, Fujimoto Z, Sakurai M, Momma M, Ko JA, Nam SH, Kimura A, Kim YM. Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus. J Biochem 2015; 159:331-9. [PMID: 26494689 DOI: 10.1093/jb/mvv104] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2015] [Accepted: 09/12/2015] [Indexed: 11/12/2022] Open
Abstract
The crystal structures of the wild type and catalytic mutant Asp-312→Gly in complex with isomaltohexaose of endo-1,6-dextranase from the thermophilic bacterium Thermoanaerobacter pseudethanolicus (TpDex), belonging to the glycoside hydrolase family 66, were determined. TpDex consists of three structural domains, a catalytic domain comprising an (β/α)8-barrel and two β-domains located at both N- and C-terminal ends. The isomaltohexaose-complex structure demonstrated that the isomaltohexaose molecule was bound across the catalytic site, showing that TpDex had six subsites (-4 to +2) in the catalytic cleft. Marked movement of the Trp-376 side-chain along with loop 6, which was the side wall component of the cleft at subsite +1, was observed to occupy subsite +1, indicating that it might expel the cleaved aglycone subsite after the hydrolysis reaction. Structural comparison with other mesophilic enzymes indicated that several structural features of TpDex, loop deletion, salt bridge and surface-exposed charged residue, may contribute to thermostability.
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Affiliation(s)
- Nobuhiro Suzuki
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan;
| | - Naomi Kishine
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan;
| | - Zui Fujimoto
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan;
| | - Mutsumi Sakurai
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan
| | - Mitsuru Momma
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan
| | - Jin-A Ko
- Eco-Friendly Bio-material Research Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 580-185, Korea
| | - Seung-Hee Nam
- Department of Food Science and Technology and Functional Food Research Center, Chonnam National University, Gwangju 500-757, Korea
| | - Atsuo Kimura
- Division of Applied Bioscience, Research Faculty of Agriculture, Hokkaido University, Kita-9 Nisi-9, Kita-ku, Sapporo 060-8589, Japan
| | - Young-Min Kim
- Department of Food Science and Technology and Functional Food Research Center, Chonnam National University, Gwangju 500-757, Korea; Bioenergy Research Center, Chonnam National University, Gwangju 500-757, Korea
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18
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Zohra RR, Aman A, Ansari A, Haider MS, Qader SAU. Purification, characterization and end product analysis of dextran degrading endodextranase from Bacillus licheniformis KIBGE-IB25. Int J Biol Macromol 2015; 78:243-8. [PMID: 25881960 DOI: 10.1016/j.ijbiomac.2015.04.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2015] [Revised: 03/31/2015] [Accepted: 04/01/2015] [Indexed: 11/28/2022]
Abstract
Degradation of high molecular weight dextran for obtaining low molecular weight dextran is based on the hydrolysis using chemical and enzymatic methods. Current research study focused on production, purification and characterization of dextranase from a newly isolated strain of Bacillus licheniformis KIBGE-IB25. Dextranase was purified up to 36 folds with specific activity of 1405 U/mg and molecular weight of 158 kDa. It was found that enzyme performs optimum cleavage of dextran (5000 Da, 0.5%) at 35 °C in 15 min at pH 4.5 with a Km and Vmax of 0.374 mg/ml and 182 μmol/min, respectively. Relative amino acid composition analysis of purified enzyme suggested the presence of higher number of hydrophobic, acidic and glycosylation promoting amino acids. The N-terminal sequence of dextranase KIBGE-IB25 was AYTVTLYLQG. It exhibited distinct amino acid sequence yet shared some inherent characteristics with glycosyl hydrolases (GH) family 49 and also testified the presence of O-glycosylation at N-terminal end.
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Affiliation(s)
- Rashida Rahmat Zohra
- The Karachi Institute of Biotechnology & Genetic Engineering (KIBGE), University of Karachi, Karachi 75270, Pakistan
| | - Afsheen Aman
- The Karachi Institute of Biotechnology & Genetic Engineering (KIBGE), University of Karachi, Karachi 75270, Pakistan
| | - Asma Ansari
- The Karachi Institute of Biotechnology & Genetic Engineering (KIBGE), University of Karachi, Karachi 75270, Pakistan
| | - Muhammad Samee Haider
- Food & Marine Resource Research Centre, Pakistan Council of Scientific & Industrial Research (PCSIR) Laboratories Complex, Karachi 75280, Pakistan
| | - Shah Ali Ul Qader
- The Karachi Institute of Biotechnology & Genetic Engineering (KIBGE), University of Karachi, Karachi 75270, Pakistan.
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19
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Suzuki N, Fujimoto Z, Kim YM, Momma M, Kishine N, Suzuki R, Suzuki S, Kitamura S, Kobayashi M, Kimura A, Funane K. Structural elucidation of the cyclization mechanism of α-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase. J Biol Chem 2014; 289:12040-12051. [PMID: 24616103 DOI: 10.1074/jbc.m114.547992] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase belongs to the glycoside hydrolase family 66 and catalyzes an intramolecular transglucosylation reaction that produces cycloisomaltooligosaccharides from dextran. The crystal structure of the core fragment from Ser-39 to Met-738 of B. circulans T-3040 cycloisomaltooligosaccharide glucanotransferase, devoid of its N-terminal signal peptide and C-terminal nonconserved regions, was determined. The structural model contained one catalytic (β/α)8-barrel domain and three β-domains. Domain N with an immunoglobulin-like β-sandwich fold was attached to the N terminus; domain C with a Greek key β-sandwich fold was located at the C terminus, and a carbohydrate-binding module family 35 (CBM35) β-jellyroll domain B was inserted between the 7th β-strand and the 7th α-helix of the catalytic domain A. The structures of the inactive catalytic nucleophile mutant enzyme complexed with isomaltohexaose, isomaltoheptaose, isomaltooctaose, and cycloisomaltooctaose revealed that the ligands bound in the catalytic cleft and the sugar-binding site of CBM35. Of these, isomaltooctaose bound in the catalytic site extended to the second sugar-binding site of CBM35, which acted as subsite -8, representing the enzyme·substrate complex when the enzyme produces cycloisomaltooctaose. The isomaltoheptaose and cycloisomaltooctaose bound in the catalytic cleft with a circular structure around Met-310, representing the enzyme·product complex. These structures collectively indicated that CBM35 functions in determining the size of the product, causing the predominant production of cycloisomaltooctaose by the enzyme. The canonical sugar-binding site of CBM35 bound the mid-part of isomaltooligosaccharides, indicating that the original function involved substrate binding required for efficient catalysis.
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Affiliation(s)
- Nobuhiro Suzuki
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602
| | - Zui Fujimoto
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602.
| | - Young-Min Kim
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602; Division of Applied Bioscience, Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589
| | - Mitsuru Momma
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602
| | - Naomi Kishine
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602
| | - Ryuichiro Suzuki
- Applied Microbiology Division, National Food Research Institute, National Agriculture and Food Research Organization, Tsukuba 305-8642
| | - Shiho Suzuki
- College of Life, Environment, and Advanced Sciences, Osaka Prefecture University, Sakai 599-8531
| | - Shinichi Kitamura
- College of Life, Environment, and Advanced Sciences, Osaka Prefecture University, Sakai 599-8531
| | - Mikihiko Kobayashi
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602; Applied Microbiology Division, National Food Research Institute, National Agriculture and Food Research Organization, Tsukuba 305-8642; Department of Food and Health Science, Jissen Women's University, Hino 191-8510, Japan
| | - Atsuo Kimura
- Division of Applied Bioscience, Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589
| | - Kazumi Funane
- Applied Microbiology Division, National Food Research Institute, National Agriculture and Food Research Organization, Tsukuba 305-8642.
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20
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Wang D, Lu M, Wang X, Jiao Y, Fang Y, Liu Z, Wang S. Improving stability of a novel dextran-degrading enzyme from marine Arthrobacter oxydans KQ11. Carbohydr Polym 2014; 103:294-9. [DOI: 10.1016/j.carbpol.2013.12.025] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2013] [Revised: 11/10/2013] [Accepted: 12/09/2013] [Indexed: 11/27/2022]
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21
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Wang D, Lu M, Wang S, Jiao Y, Li W, Zhu Q, Liu Z. Purification and characterization of a novel marine Arthrobacter oxydans KQ11 dextranase. Carbohydr Polym 2014; 106:71-6. [PMID: 24721052 DOI: 10.1016/j.carbpol.2014.01.102] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2013] [Revised: 01/29/2014] [Accepted: 01/31/2014] [Indexed: 11/18/2022]
Abstract
Dextranases can hydrolyze dextran deposits and have been used in the sugar industry. Microbial strains which produce dextranases for industrial use are chiefly molds, which present safety issues, and dextranase production from them is impractically long. Thus, marine bacteria to produce dextranases may overcome these problems. Crude dextranase was purified by a combination of ammonium sulfate fractionation and ion-exchange chromatography, and then the enzyme was characterized. The enzyme was 66.2 kDa with an optimal temperature of 50°C and a pH of 7. The enzyme had greater than 60% activity at 60°C for 1h. Moreover, 10mM Co(2+) enhanced dextranase activity (196%), whereas Ni(2+) and Fe(3+) negatively affected activity. 0.02% xylitol and 1% alcohol enhanced activity (132.25% and 110.37%, respectively) whereas 0.05% SDS inhibited activity (14.07%). The thickness of S. mutans and mixed-species oral biofilm decreased from 54,340 nm to 36,670 nm and from 64,260 nm to 43,320 nm, respectively.
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Affiliation(s)
- Delong Wang
- School of Marine Science and Technology, Huaihai Institute of Technology, Lianyungang, Jiangsu 222005, China; Key Laboratory of Marine Biology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Mingsheng Lu
- School of Marine Science and Technology, Huaihai Institute of Technology, Lianyungang, Jiangsu 222005, China; Jiangsu Marine Resources Development Research Insititute, Lianyungang, Jiangsu 222005, China
| | - Shujun Wang
- School of Marine Science and Technology, Huaihai Institute of Technology, Lianyungang, Jiangsu 222005, China.
| | - Yuliang Jiao
- School of Marine Science and Technology, Huaihai Institute of Technology, Lianyungang, Jiangsu 222005, China
| | - Weijuan Li
- Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Qiang Zhu
- School of Marine Science and Technology, Huaihai Institute of Technology, Lianyungang, Jiangsu 222005, China
| | - Zhaopu Liu
- Key Laboratory of Marine Biology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.
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22
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Purushe S, Prakash D, Nawani NN, Dhakephalkar P, Kapadnis B. Biocatalytic potential of an alkalophilic and thermophilic dextranase as a remedial measure for dextran removal during sugar manufacture. BIORESOURCE TECHNOLOGY 2012; 115:2-7. [PMID: 22277209 DOI: 10.1016/j.biortech.2012.01.002] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2011] [Revised: 12/30/2011] [Accepted: 01/03/2012] [Indexed: 05/12/2023]
Abstract
The present study is focused on dextranase from Streptomyces sp. NK458 with potential to remove dextran formed during sugar manufacture. The dextranase had molecular weight of 130 kDa and hydrolyzed 15-25 and 410 kDa dextran. Dextranase production was optimized using statistical designs and the enzyme was purified 1.8-fold with 55.5% recovery. It displayed maximum activity at pH 9.0 and 60°C and was stable over a wide range of pH from 5.0 to 10.0. The k(m) and V(max) values were 3.05 mM and 17.97 mmol/ml/h, respectively. Ten units of dextranase could reduce dextran content by 67% in 24h and 56% in 72 h from sugarcane juice of cane variety CoS 86032. The enzyme was stable up to 3 days at 30°C beyond which its activity decreased and dextran removal could be retained by supplementation of 5 U of dextranase. These properties make it a promising biocatalyst for sugar industry.
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Affiliation(s)
- Shweta Purushe
- Department of Microbiology, University of Pune, Pune 411007, India
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23
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Suzuki N, Kim YM, Fujimoto Z, Momma M, Okuyama M, Mori H, Funane K, Kimura A. Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66. J Biol Chem 2012; 287:19916-26. [PMID: 22337884 DOI: 10.1074/jbc.m112.342444] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Dextranase is an enzyme that hydrolyzes dextran α-1,6 linkages. Streptococcus mutans dextranase belongs to glycoside hydrolase family 66, producing isomaltooligosaccharides of various sizes and consisting of at least five amino acid sequence regions. The crystal structure of the conserved fragment from Gln(100) to Ile(732) of S. mutans dextranase, devoid of its N- and C-terminal variable regions, was determined at 1.6 Å resolution and found to contain three structural domains. Domain N possessed an immunoglobulin-like β-sandwich fold; domain A contained the enzyme's catalytic module, comprising a (β/α)(8)-barrel; and domain C formed a β-sandwich structure containing two Greek key motifs. Two ligand complex structures were also determined, and, in the enzyme-isomaltotriose complex structure, the bound isomaltooligosaccharide with four glucose moieties was observed in the catalytic glycone cleft and considered to be the transglycosylation product of the enzyme, indicating the presence of four subsites, -4 to -1, in the catalytic cleft. The complexed structure with 4',5'-epoxypentyl-α-d-glucopyranoside, a suicide substrate of the enzyme, revealed that the epoxide ring reacted to form a covalent bond with the Asp(385) side chain. These structures collectively indicated that Asp(385) was the catalytic nucleophile and that Glu(453) was the acid/base of the double displacement mechanism, in which the enzyme showed a retaining catalytic character. This is the first structural report for the enzyme belonging to glycoside hydrolase family 66, elucidating the enzyme's catalytic machinery.
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Affiliation(s)
- Nobuhiro Suzuki
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan
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24
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Suzuki N, Kim YM, Fujimoto Z, Momma M, Kang HK, Funane K, Okuyama M, Mori H, Kimura A. Crystallization and preliminary crystallographic analysis of dextranase from Streptococcus mutans. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011; 67:1542-4. [PMID: 22139161 PMCID: PMC3232134 DOI: 10.1107/s1744309111038425] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2011] [Accepted: 09/19/2011] [Indexed: 11/10/2022]
Abstract
Streptococcus mutans dextranase hydrolyzes the internal α-1,6-linkages of dextran and belongs to glycoside hydrolase family 66. An N- and C-terminal deletion mutant of S. mutans dextranase was crystallized by the sitting-drop vapour-diffusion method. The crystals diffracted to a resolution of 1.6 Å and belonged to space group P2(1), with unit-cell parameters a = 53.2, b = 89.7, c = 63.3 Å, β = 102.3°. Assuming that the asymmetric unit of the crystal contained one molecule, the Matthews coefficient was calculated to be 4.07 Å(3) Da(-1); assuming the presence of two molecules in the asymmetric unit it was calculated to be 2.03 Å(3) Da(-1).
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Affiliation(s)
- Nobuhiro Suzuki
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Young-Min Kim
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
- Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo 060-8589, Japan
| | - Zui Fujimoto
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Mitsuru Momma
- Biomolecular Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Hee-Kwon Kang
- Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo 060-8589, Japan
| | - Kazumi Funane
- Applied Microbiology Division, National Food Research Institute, 2-1-12 Kannondai, Tsukuba 305-8642, Japan
| | - Masayuki Okuyama
- Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo 060-8589, Japan
| | - Haruhide Mori
- Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo 060-8589, Japan
| | - Atsuo Kimura
- Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo 060-8589, Japan
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Wu DT, Zhang HB, Huang LJ, Hu XQ. Purification and characterization of extracellular dextranase from a novel producer, Hypocrea lixii F1002, and its use in oligodextran production. Process Biochem 2011. [DOI: 10.1016/j.procbio.2011.06.025] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Kang HK, Kim YM, Nakai H, Kang MS, Hakamada W, Okuyama M, Mori H, Nishio T, Kimura A. Suicide Substrate-based Inactivation of Endodextranase by .OMEGA.-Epoxyalkyl .ALPHA.-D-Glucopyranosides. J Appl Glycosci (1999) 2010. [DOI: 10.5458/jag.57.269] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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