1
|
Ghimire S, Hasan MM, Fang XW. Small ubiquitin-like modifiers E3 ligases in plant stress. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP24032. [PMID: 38669463 DOI: 10.1071/fp24032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Accepted: 04/05/2024] [Indexed: 04/28/2024]
Abstract
Plants regularly encounter various environmental stresses such as salt, drought, cold, heat, heavy metals and pathogens, leading to changes in their proteome. Of these, a post-translational modification, SUMOylation is particularly significant for its extensive involvement in regulating various plant molecular processes to counteract these external stressors. Small ubiquitin-like modifiers (SUMO) protein modification significantly contributes to various plant functions, encompassing growth, development and response to environmental stresses. The SUMO system has a limited number of ligases even in fully sequenced plant genomes but SUMO E3 ligases are pivotal in recognising substrates during the process of SUMOylation. E3 ligases play pivotal roles in numerous biological and developmental processes in plants, including DNA repair, photomorphogenesis, phytohormone signalling and responses to abiotic and biotic stress. A considerable number of targets for E3 ligases are proteins implicated in reactions to abiotic and biotic stressors. This review sheds light on how plants respond to environmental stresses by focusing on recent findings on the role of SUMO E3 ligases, contributing to a better understanding of how plants react at a molecular level to such stressors.
Collapse
Affiliation(s)
- Shantwana Ghimire
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Md Mahadi Hasan
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Xiang-Wen Fang
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, Gansu 730000, China
| |
Collapse
|
2
|
Shimotohno A, Aki SS, Takahashi N, Umeda M. Regulation of the Plant Cell Cycle in Response to Hormones and the Environment. ANNUAL REVIEW OF PLANT BIOLOGY 2021; 72:273-296. [PMID: 33689401 DOI: 10.1146/annurev-arplant-080720-103739] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Developmental and environmental signals converge on cell cycle machinery to achieve proper and flexible organogenesis under changing environments. Studies on the plant cell cycle began 30 years ago, and accumulated research has revealed many links between internal and external factors and the cell cycle. In this review, we focus on how phytohormones and environmental signals regulate the cell cycle to enable plants to cope with a fluctuating environment. After introducing key cell cycle regulators, we first discuss how phytohormones and their synergy are important for regulating cell cycle progression and how environmental factors positively and negatively affect cell division. We then focus on the well-studied example of stress-induced G2 arrest and view the current model from an evolutionary perspective. Finally, we discuss the mechanisms controlling the transition from the mitotic cycle to the endocycle, which greatly contributes to cell enlargement and resultant organ growth in plants.
Collapse
Affiliation(s)
- Akie Shimotohno
- Department of Biological Science, The University of Tokyo, Tokyo 113-0033, Japan
- Current affiliation: Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya 464-8601, Japan;
| | - Shiori S Aki
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Nara 630-0192, Japan; , ,
| | - Naoki Takahashi
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Nara 630-0192, Japan; , ,
| | - Masaaki Umeda
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Nara 630-0192, Japan; , ,
| |
Collapse
|
3
|
Zhang K, Zhao L, Yang X, Li M, Sun J, Wang K, Li Y, Zheng Y, Yao Y, Li W. GmRAV1 regulates regeneration of roots and adventitious buds by the cytokinin signaling pathway in Arabidopsis and soybean. PHYSIOLOGIA PLANTARUM 2019; 165:814-829. [PMID: 29923201 DOI: 10.1111/ppl.12788] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Revised: 06/12/2018] [Accepted: 06/14/2018] [Indexed: 05/07/2023]
Abstract
The division and differentiation of cells are the basis of growth and development. Cytokinin plays an active role in cell growth division and differentiation. The Related to ABI3/VP1 (RAV) family comprises transcription factors in plants and all contain both AP2- and B3-like domains. In this study, GmRAV1 (Glycine max), which belongs to the AP2/ERF transcription factor family, was isolated and functionally characterized. Subcellular localization showed that GmRAV1 was localized to the nucleus and quantitative real-time polymerase chain reaction (qRT-PCR) analysis indicated that GmRAV1 was induced by cytokinin. Furthermore, compared with wild-type plants, plants overexpressing GmRAV1 showed dwarfism and late maturity. In contrast, the mutant of TEMPRANILLO (tem1) and GmRAV-i plants had an opposite phenotype. More interestingly, a root and shoot regeneration experiment indicated that GmRAV1 is one of the most important positive regulators of the cytokinin signaling pathway, which is involved in promoting root and shoot regeneration. In addition, RNA-seq and qRT-PCR results indicated that GmRAV1 is related to the key factors involved in the cytokinin signaling pathway, namely, cytokinin oxidase (GmCKX6 and GmCKX7), purine permease (GmPUP1), cell cyclin-related genes (GmCycA2;4, GmCycD3 and GmCYC1), cyclin-dependent kinase (GmCDKB2), cell division cycle (GmCDC20), E2F transcription factors (GmE2FE) and authentic response regulator (GmARR9). In conclusion, GmRAV1, one of the most important positive regulators involved in promoting root and shoot regeneration, was induced by cytokinin and is related to the key factors of the cytokinin signaling pathways.
Collapse
Affiliation(s)
- Kexin Zhang
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Lin Zhao
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Xue Yang
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Minmin Li
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Jingzhe Sun
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Kuo Wang
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Yinghua Li
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Yanhong Zheng
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Yuheng Yao
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| | - Wenbin Li
- Key Laboratory of Soybean Biology in the Chinese Education Ministry, Soybean Research Institute, Northeast Agricultural University, Harbin 150030, China
| |
Collapse
|
4
|
Gigli-Bisceglia N, Engelsdorf T, Strnad M, Vaahtera L, Khan GA, Jamoune A, Alipanah L, Novák O, Persson S, Hejatko J, Hamann T. Cell wall integrity modulates Arabidopsis thaliana cell cycle gene expression in a cytokinin- and nitrate reductase-dependent manner. Development 2018; 145:dev.166678. [DOI: 10.1242/dev.166678] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 08/28/2018] [Indexed: 12/15/2022]
Abstract
During plant growth and defense, cell cycle activity needs to be coordinated with cell wall integrity. Little is known about how coordination is achieved. Here we investigated coordination in Arabidopsis thaliana seedlings by studying the impact of cell wall damage (CWD, caused by cellulose biosynthesis inhibition) on cytokinin homeostasis, cell cycle gene expression and shape in root tips. CWD inhibited cell cycle gene expression and increased transition zone cell width in an osmo-sensitive manner. These results were correlated with CWD-induced, osmo-sensitive changes in cytokinin homeostasis. Expression of CYTOKININ OXIDASE/DEHYDROGENASE2 and 3 (CKX2, CKX3), encoding cytokinin-degrading enzymes was induced by CWD and reduced by osmoticum treatment. In nitrate reductase1 nitrate reductase2 (nia1 nia2) seedlings, neither CKX2 and CKX3 transcript levels were increased nor cell cycle gene expression repressed by CWD. Moreover, established CWD-induced responses like jasmonic acid, salicylic acid and lignin production, were also absent, implying a central role of NIA1- and NIA2-mediated processes in regulation of CWD responses. These results suggest that CWD enhances cytokinin degradation rates through a NIA1 and NIA2-mediated process, subsequently attenuating cell cycle gene expression.
Collapse
Affiliation(s)
- Nora Gigli-Bisceglia
- Department of Biology, Høgskoleringen 5, Realfagbygget, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Timo Engelsdorf
- Department of Biology, Høgskoleringen 5, Realfagbygget, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Miroslav Strnad
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences & Faculty of Science of Palacký University, Šlechtitelů 27, CZ-78371 Olomouc, Czech Republic
| | - Lauri Vaahtera
- Department of Biology, Høgskoleringen 5, Realfagbygget, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | | | - Amel Jamoune
- Laboratory of Molecular Plant Physiology and Functional Genomics and Proteomics of Plants CEITEC-Central European Institute of Technology Masaryk University Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Leila Alipanah
- Department of Biology, Høgskoleringen 5, Realfagbygget, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Ondřej Novák
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences & Faculty of Science of Palacký University, Šlechtitelů 27, CZ-78371 Olomouc, Czech Republic
| | - Staffan Persson
- School of Biosciences, University of Melbourne, Parkville VIC 3010, Australia
| | - Jan Hejatko
- Laboratory of Molecular Plant Physiology and Functional Genomics and Proteomics of Plants CEITEC-Central European Institute of Technology Masaryk University Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Thorsten Hamann
- Department of Biology, Høgskoleringen 5, Realfagbygget, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| |
Collapse
|
5
|
Dun X, Tao Z, Wang J, Wang X, Liu G, Wang H. Comparative Transcriptome Analysis of Primary Roots of Brassica napus Seedlings with Extremely Different Primary Root Lengths Using RNA Sequencing. FRONTIERS IN PLANT SCIENCE 2016; 7:1238. [PMID: 27594860 PMCID: PMC4990598 DOI: 10.3389/fpls.2016.01238] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 08/04/2016] [Indexed: 05/18/2023]
Abstract
Primary root (PR) development is a crucial developmental process that is essential for plant survival. The elucidation of the PR transcriptome provides insight into the genetic mechanism controlling PR development in crops. In this study, we performed a comparative transcriptome analysis to investigate the genome-wide gene expression profiles of the seedling PRs of four Brassica napus genotypes that were divided into two groups, short group (D43 and D61), and long group (D69 and D72), according to their extremely different primary root lengths (PRLs). The results generated 55,341,366-64,631,336 clean reads aligned to 62,562 genes (61.9% of the current annotated genes) in the B. napus genome. We provide evidence that at least 44,986 genes are actively expressed in the B. napus PR. The majority of the genes that were expressed during seedling PR development were associated with metabolism, cellular processes, response to stimulus, biological regulation, and signaling. Using a pairwise comparison approach, 509 differentially expressed genes (DEGs; absolute value of log2 fold-change ≥1 and p ≤ 0.05) between the long and short groups were revealed, including phytohormone-related genes, protein kinases and phosphatases, oxygenase, cytochrome P450 proteins, etc. Combining GO functional category, KEGG, and MapMan pathway analyses indicated that the DEGs involved in cell wall metabolism, carbohydrate metabolism, lipid metabolism, secondary metabolism, protein modification and degradation, hormone pathways and signaling pathways were the main causes of the observed PRL differences. We also identified 16 differentially expressed transcription factors (TFs) involved in PR development. Taken together, these transcriptomic datasets may serve as a foundation for the identification of candidate genes and may provide valuable information for understanding the molecular and cellular events related to PR development.
Collapse
|
6
|
Kwak JS, Son GH, Kim SI, Song JT, Seo HS. Arabidopsis HIGH PLOIDY2 Sumoylates and Stabilizes Flowering Locus C through Its E3 Ligase Activity. FRONTIERS IN PLANT SCIENCE 2016; 7:530. [PMID: 27148346 PMCID: PMC4837325 DOI: 10.3389/fpls.2016.00530] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Accepted: 04/04/2016] [Indexed: 05/03/2023]
Abstract
Flowering Locus C (FLC), a floral repressor, plays an important role in flowering. The mechanisms regulating FLC gene expression and protein function have been studied extensively; however, post-translational regulation of FLC remains unclear. Here, we identified Arabidopsis HIGH PLOIDY2 (HPY2) as an E3 SUMO ligase for FLC. In vitro and vivo pull-down assays showed that FLC physically interacts with HPY2. In vitro assays showed that the stimulation of FLC sumoylation by HPY2 was dependent on SUMO-activating enzyme E1 and -conjugating enzyme E2, indicating that HPY2 was an E3 SUMO ligase for FLC. In transgenic plants, inducible HPY2 overexpression increased the concentration of FLC, indicating that HPY2 stabilized FLC through direct sumoylation. Flowering time in hpy2-2 mutants was shorter than in wild-type plants under long- and short-day conditions, with a greater effect under short-day conditions, and FLC was downregulated in hpy2-2 mutants. These data indicate that HPY2 regulates FLC function and stability at both the transcriptional and post-translational levels through its E3 SUMO ligase activity.
Collapse
Affiliation(s)
- Jun S. Kwak
- Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National UniversitySeoul, South Korea
| | - Ga H. Son
- Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National UniversitySeoul, South Korea
| | - Sung-Il Kim
- Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National UniversitySeoul, South Korea
| | - Jong T. Song
- School of Applied Biosciences, Kyungpook National UniversityDaegu, South Korea
| | - Hak S. Seo
- Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National UniversitySeoul, South Korea
- Plant Genomics and Breeding Institute, Seoul National UniversitySeoul, South Korea
- Bio-MAX Institute Seoul National UniversitySeoul, South Korea
- *Correspondence: Hak S. Seo,
| |
Collapse
|
7
|
Spatial Regulation of Root Growth: Placing the Plant TOR Pathway in a Developmental Perspective. Int J Mol Sci 2015; 16:19671-97. [PMID: 26295391 PMCID: PMC4581319 DOI: 10.3390/ijms160819671] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Revised: 07/11/2015] [Accepted: 08/11/2015] [Indexed: 12/30/2022] Open
Abstract
Plant cells contain specialized structures, such as a cell wall and a large vacuole, which play a major role in cell growth. Roots follow an organized pattern of development, making them the organs of choice for studying the spatio-temporal regulation of cell proliferation and growth in plants. During root growth, cells originate from the initials surrounding the quiescent center, proliferate in the division zone of the meristem, and then increase in length in the elongation zone, reaching their final size and differentiation stage in the mature zone. Phytohormones, especially auxins and cytokinins, control the dynamic balance between cell division and differentiation and therefore organ size. Plant growth is also regulated by metabolites and nutrients, such as the sugars produced by photosynthesis or nitrate assimilated from the soil. Recent literature has shown that the conserved eukaryotic TOR (target of rapamycin) kinase pathway plays an important role in orchestrating plant growth. We will summarize how the regulation of cell proliferation and cell expansion by phytohormones are at the heart of root growth and then discuss recent data indicating that the TOR pathway integrates hormonal and nutritive signals to orchestrate root growth.
Collapse
|
8
|
Eichmann R, Schäfer P. Growth versus immunity--a redirection of the cell cycle? CURRENT OPINION IN PLANT BIOLOGY 2015; 26:106-12. [PMID: 26190589 DOI: 10.1016/j.pbi.2015.06.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Revised: 05/03/2015] [Accepted: 06/07/2015] [Indexed: 05/07/2023]
Abstract
Diseases caused by plant pathogens significantly reduce growth and yield in agricultural crop production. Raising immunity in crops is therefore a major aim in breeding programs. However, efforts to enhance immunity are challenged by the occurrence of growth inhibition triggered by immunity that can be as detrimental as diseases. In this review, we will propose molecular models to explain the inhibitory growth-immunity crosstalk. We will briefly discuss why the resource reallocation model might not represent the driving force for the observed growth-immunity trade-offs. We suggest a model in which immunity redirects and initiates hormone signalling activities that can impair plant growth by antagonising cell cycle regulation and meristem activities.
Collapse
Affiliation(s)
- Ruth Eichmann
- School of Life Sciences, University of Warwick, Gibbet Hill, CV4 7AL Coventry, UK
| | - Patrick Schäfer
- School of Life Sciences, University of Warwick, Gibbet Hill, CV4 7AL Coventry, UK; Warwick Integrative Synthetic Biology Centre, University of Warwick, Gibbet Hill, CV4 7AL Coventry, UK.
| |
Collapse
|