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Qiao S, Ma C, Li H, Zhang Y, Zhang M, Zhao W, Liu B. Responses of growth and photosynthesis to alkaline stress in three willow species. Sci Rep 2024; 14:14672. [PMID: 38918471 PMCID: PMC11199568 DOI: 10.1038/s41598-024-65004-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 06/15/2024] [Indexed: 06/27/2024] Open
Abstract
Investigating differences in resistance to alkaline stress among three willow species can provide a theoretical basis for planting willow in saline soils. Therefore we tested three willow species (Salix matsudana, Salix gordejevii and Salix linearistipularis), already known for their high stress tolerance, to alkaline stress environment at different pH values under hydroponics. Root and leaf dry weight, root water content, leaf water content, chlorophyll content, photosynthesis and chlorophyll fluorescence of three willow cuttings were monitored six times over 15 days under alkaline stress. With the increase in alkaline stress, the water retention capacity of leaves of the three species of willow cuttings was as follows: S. matsudana > S. gordejevii > S. linearistipularis and the water retention capacity of the root system was as follows: S. gordejevii > S. linearistipularis > S. matsudana. The chlorophyll content was significantly reduced, damage symptoms were apparent. The net photosynthetic rate (Pn), rate of transpiration (E), and stomatal conductance (Gs) of the leaves showed a general trend of decreasing, and the intercellular CO2 concentration (Ci) of S. matsudana and S. gordejevii first declined and then tended to level off, while the intercellular CO2 concentration of S. linearistipularis first declined and then increased. The quantum yield and energy allocation ratio of the leaf photosystem II (PSII) reaction centre changed significantly (φPo, Ψo and φEo were obviously suppressed and φDo was promoted). The photosystem II (PSII) reaction centre quantum performance index and driving force showed a clear downwards trend. Based on the results it can be concluded that alkaline stress tolerance of three willow was as follows: S. matsudana > S. gordejevii > S. linearistipularis. However, since the experiment was done on young seedlings, further study at saplings stage is required to revalidate the results.
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Affiliation(s)
- Shenqi Qiao
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China
| | - Changming Ma
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China
- College of Life Science, Hengshui, Hebei, China
| | - Hongjiao Li
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China
| | - Yu Zhang
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China
| | - Minghui Zhang
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China
| | - Wenhao Zhao
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China
| | - Bingxiang Liu
- Department of Forest Cultivation, College of Forest, Hebei Agricultural University, Baoding, 071000, China.
- Hebei Urban Forest Health Technology Innovation Center, No. 2596 Lekai South Street, Lianchi District, Baoding City, 071000, Hebei Province, China.
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2
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Ma P, Li J, Sun G, Zhu J. Comparative transcriptome analysis reveals the adaptive mechanisms of halophyte Suaeda dendroides encountering high saline environment. FRONTIERS IN PLANT SCIENCE 2024; 15:1283912. [PMID: 38419781 PMCID: PMC10899697 DOI: 10.3389/fpls.2024.1283912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Accepted: 01/30/2024] [Indexed: 03/02/2024]
Abstract
Suaeda dendroides, a succulent euhalophyte of the Chenopodiaceae family, intermittently spread around northern Xinjiang, China, has the ability to grow and develop in saline and alkali environments. The objective of this study was therefore to investigate the underlying molecular mechanisms of S. dendroides response to high salt conditions. 27 sequencing libraries prepared from low salt (200 mM NaCl) and high salt (800 mM NaCl) treated plants at 5 different stages were sequenced using Illumina Hiseq 2000. A total of 133,107 unigenes were obtained, of which 4,758 were DEGs. The number of DEGs in the high salt group (3,189) was more than the low salt treatment group (733) compared with the control. GO and KEGG analysis of the DEGs at different time points of the high salt treatment group showed that the genes related to cell wall biosynthesis and modification, plant hormone signal transduction, ion homeostasis, organic osmolyte accumulation, and reactive oxygen species (ROS) detoxification were significantly expressed, which indicated that these could be the main mechanisms of S. dendroides acclimate to high salt stress. The study provides a new perspective for understanding the molecular mechanisms of halophytes adapting to high salinity. It also provides a basis for future investigations of key salt-responsive genes in S. dendroides.
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Affiliation(s)
- Panpan Ma
- College of Life Sciences, Shihezi University, Shihezi, China
- Xinjiang Production & Construction Group Key Laboratory of Crop Germplasm Enhancement and Gene Resources Utilization, Biotechnology Research Institute, Xinjiang Academy of Agricultural and Reclamation Sciences, Shihezi, China
| | - Jilian Li
- Key Laboratory of Cotton Biology and Genetic Breeding in Northwest Inland Region of the Ministry of Agriculture (Xinjiang), Institute of Cotton Research, Xinjiang Academy of Agricultural and Reclamation Sciences, Shihezi, China
| | - Guoqing Sun
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
- Western Research Institute, Chinese Academy of Agricultural Sciences, Changji, China
| | - Jianbo Zhu
- College of Life Sciences, Shihezi University, Shihezi, China
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3
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Shaban AS, Safhi FA, Fakhr MA, Pruthi R, Abozahra MS, El-Tahan AM, Subudhi PK. Comparison of the Morpho-Physiological and Molecular Responses to Salinity and Alkalinity Stresses in Rice. PLANTS (BASEL, SWITZERLAND) 2023; 13:60. [PMID: 38202367 PMCID: PMC10780433 DOI: 10.3390/plants13010060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 12/10/2023] [Accepted: 12/21/2023] [Indexed: 01/12/2024]
Abstract
Rice is a major food crop that has a critical role in ensuring food security for the global population. However, major abiotic stresses such as salinity and alkalinity pose a major threat to rice farming worldwide. Compared with salinity stress, there is limited progress in elucidating the molecular mechanisms associated with alkalinity tolerance in rice. Since both stresses coexist in coastal and arid regions, unraveling of the underlying molecular mechanisms will help the breeding of high-yielding stress-tolerant rice varieties for these areas. This study examined the morpho-physiological and molecular response of four rice genotypes to both salinity and alkalinity stresses. Geumgangbyeo was highly tolerant and Mermentau was the least tolerant to both stresses, while Pokkali and Bengal were tolerant to only salinity and alkalinity stress, respectively. A set of salinity and alkalinity stress-responsive genes showed differential expression in the above rice genotypes under both stress conditions. The expression patterns were consistent with the observed morphological responses in these rice genotypes, suggesting the potential role of these genes in regulating tolerance to these abiotic stresses. Overall, this study suggested that divergence in response to alkalinity and salinity stresses among rice genotypes could be due to different molecular mechanisms conferring tolerance to each stress. In addition to providing a basis for further investigations into differentiating the molecular bases underlying tolerance, this study also emphasizes the possibilities of developing climate-resilient rice varieties using donors that are tolerant to both abiotic stresses.
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Affiliation(s)
- Abdelghany S. Shaban
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA;
- Botany and Microbiology Department, Faculty of Science (Boys), Al-Azhar University, Cairo 11884, Egypt;
| | - Fatmah Ahmed Safhi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Marwa A. Fakhr
- Botany Department, Faculty of Science, Fayoum University, Fayoum 63514, Egypt;
- Green materials Technology Department, Environment and Natural Materials Research Institute, City of Scientific Research and Technological Applications (SRTA-City), Borg El-Arab, Alexandria 21934, Egypt
| | - Rajat Pruthi
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA;
| | - Mahmoud S. Abozahra
- Botany and Microbiology Department, Faculty of Science (Boys), Al-Azhar University, Cairo 11884, Egypt;
| | - Amira M. El-Tahan
- Plant Production Department, Arid Lands Cultivation Research Institute, City of Scientific Research and Technological Applications (SRTA-City), Borg El-Arab, Alexandria 21934, Egypt;
| | - Prasanta K. Subudhi
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA;
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Rao Y, Peng T, Xue S. Mechanisms of plant saline-alkaline tolerance. JOURNAL OF PLANT PHYSIOLOGY 2023; 281:153916. [PMID: 36645936 DOI: 10.1016/j.jplph.2023.153916] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 12/28/2022] [Accepted: 01/09/2023] [Indexed: 06/17/2023]
Abstract
Saline-alkaline soil affects crop growth and development, thereby suppressing the yields. Human activities and climate changes are putting arable land under the threat of saline-alkalization. To feed a growing global population in limited arable land, it is of great urgence to breed saline-alkaline tolerant crops to cope with food security. Plant salt-tolerance mechanisms have already been explored for decades. However, to date, the molecular mechanisms underlying plants responses to saline-alkaline stress have remained largely elusive. Here, we summarize recent advances in plant response to saline-alkaline stress and propose some points deserving of further exploration.
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Affiliation(s)
- Ying Rao
- College of Agriculture, Guizhou University, Guiyang, 550025, China
| | - Ting Peng
- College of Agriculture, Guizhou University, Guiyang, 550025, China.
| | - Shaowu Xue
- College of Life Science and Technology, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
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İbrahimova U, Kumari P, Yadav S, Rastogi A, Antala M, Suleymanova Z, Zivcak M, Tahjib-Ul-Arif M, Hussain S, Abdelhamid M, Hajihashemi S, Yang X, Brestic M. Progress in understanding salt stress response in plants using biotechnological tools. J Biotechnol 2021; 329:180-191. [PMID: 33610656 DOI: 10.1016/j.jbiotec.2021.02.007] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 01/06/2021] [Accepted: 02/13/2021] [Indexed: 12/13/2022]
Abstract
Salinization is a worldwide environmental problem, which is negatively impacting crop yield and thus posing a threat to the world's food security. Considering the rising threat of salinity, it is need of time, to understand the salt tolerant mechanism in plants and find avenues for the development of salinity resistant plants. Several plants tolerate salinity in a different manner, thereby halophytes and glycophytes evolved altered mechanisms to counter the stress. Therefore, in this review article, physiological, metabolic, and molecular aspects of the plant adaptation to salt stress have been discussed. The conventional breeding techniques for developing salt tolerant plants has not been much successful, due to its multigenic trait. The inflow of data from plant sequencing projects and annotation of genes led to the identification of many putative genes having a role in salt stress. The bioinformatics tools provided preliminary information and were helpful for making salt stress-specific databases. The microRNA identification and characterization led to unraveling the finer intricacies of the network. The transgenic approach finally paved a way for overexpressing some important genes viz. DREB, MYB, COMT, SOS, PKE, NHX, etc. conferred salt stress tolerance. In this review, we tried to show the effect of salinity on plants, considering ion homeostasis, antioxidant defense response, proteins involved, possible utilization of transgenic plants, and bioinformatics for coping with this stress factor. An overview of previous studies related to salt stress is presented in order to assist researchers in providing a potential solution for this increasing environmental threat.
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Affiliation(s)
- Ulkar İbrahimova
- Institute of Molecular Biology and Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev, Baku, AZ 1073, Azerbaijan
| | - Pragati Kumari
- Department of Life Science, Singhania University, Jhunjhunu, Rajasthan 333515, India; Scientist Hostel-S-02, Chauras campus, Srinagar Garhwal, Uttarakhand 246174, India
| | - Saurabh Yadav
- Department of Biotechnology, Hemvati Nandan Bahuguna Garhwal (Central) University, Srinagar Garhwal, Uttarakhand, 246174, India
| | - Anshu Rastogi
- Laboratory of Bioclimatology, Department of Ecology and Environmental Protection, Poznan University of Life Sciences, Piątkowska 94, 60-649 Poznan, Poland.
| | - Michal Antala
- Laboratory of Bioclimatology, Department of Ecology and Environmental Protection, Poznan University of Life Sciences, Piątkowska 94, 60-649 Poznan, Poland; Department of Plant Physiology, Slovak University of Agriculture, A. Hlinku 2, 94976 Nitra, Slovak Republic
| | - Zarifa Suleymanova
- Institute of Molecular Biology and Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev, Baku, AZ 1073, Azerbaijan
| | - Marek Zivcak
- Department of Plant Physiology, Slovak University of Agriculture, A. Hlinku 2, 94976 Nitra, Slovak Republic
| | - Md Tahjib-Ul-Arif
- Department of Biochemistry & Molecular Biology, Bangladesh Agricultural University, Mymensingh-2202, Bangladesh
| | - Sajad Hussain
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Sichuan Agricultural University, Chengdu 611130, China
| | | | - Shokoofeh Hajihashemi
- Plant Biology Department, Faculty of Science, Behbahan Khatam Alanbia University of Technology, Khuzestan, 47189-63616, Iran
| | - Xinghong Yang
- College of Life Science, State Key Laboratory of Crop Biology, Shandong Key Laboratory of Crop Biology, Shandong Agricultural University, Taian 271018, China
| | - Marian Brestic
- Department of Plant Physiology, Slovak University of Agriculture, A. Hlinku 2, 94976 Nitra, Slovak Republic.
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Bai J, Jin K, Qin W, Wang Y, Yin Q. Proteomic Responses to Alkali Stress in Oats and the Alleviatory Effects of Exogenous Spermine Application. FRONTIERS IN PLANT SCIENCE 2021; 12:627129. [PMID: 33868329 PMCID: PMC8049610 DOI: 10.3389/fpls.2021.627129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 03/08/2021] [Indexed: 05/07/2023]
Abstract
Alkali stress limits plant growth and yield more strongly than salt stress and can lead to the appearance of yellow leaves; however, the reasons remain unclear. In this study, we found that (1) the down-regulation of coproporphyrinogen III oxidase, protoporphyrinogen oxidase, and Pheophorbide a oxygenase in oats under alkali stress contributes to the appearance of yellow leaves (as assessed by proteome and western blot analyses). (2) Some oat proteins that are involved in the antioxidant system, root growth, and jasmonic acid (JA) and indole-3-acetic acid (IAA) synthesis are up-regulated in response to alkalinity and help increase alkali tolerance. (3) We added exogenous spermine to oat plants to improve their alkali tolerance, which resulted in higher chlorophyll contents and plant dry weights than in plants subjected to alkaline stress alone. This was due to up-regulation of chitinase and proteins related to chloroplast structure, root growth, and the antioxidant system. Spermine addition increased sucrose utilization efficiency, and promoted carbohydrate export from leaves to roots to increase energy storage in roots. Spermine addition also increased the IAA and JA contents required for root growth.
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Affiliation(s)
- Jianhui Bai
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Ke Jin
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
- *Correspondence: Ke Jin,
| | - Wei Qin
- Inner Mongolia Technical College of Construction, Hohhot, China
- Wei Qin,
| | - Yuqing Wang
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Qiang Yin
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
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Huang S, Xin S, Xie G, Han J, Liu Z, Wang B, Zhang S, Wu Q, Cheng X. Mutagenesis reveals that the rice OsMPT3 gene is an important osmotic regulatory factor. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.cj.2020.02.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Singh RK, Deshmukh R, Muthamilarasan M, Rani R, Prasad M. Versatile roles of aquaporin in physiological processes and stress tolerance in plants. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 149:178-189. [PMID: 32078896 DOI: 10.1016/j.plaphy.2020.02.009] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Revised: 02/11/2020] [Accepted: 02/11/2020] [Indexed: 05/21/2023]
Abstract
Aquaporins are pore-forming transmembrane proteins that facilitate the movement of water and many other small neutral solutes across the cells and intracellular compartments. Plants exhibits high diversity in aquaporin isoforms and broadly classified into five different subfamilies on the basis of phylogenetic distribution and subcellular occurrence: plasma membrane intrinsic proteins (PIPs), tonoplast intrinsic proteins (TIPs), nodulin 26-like proteins (NIPs), small basic intrinsic proteins (SIPs) and uncharacterized intrinsic proteins (XIPs). The gating mechanism of aquaporin channels is tightly regulated by post-translational modifications such as phosphorylation, methylation, acetylation, glycosylation, and deamination. Aquaporin expression and transport functions are also modulated by the various phytohormones-mediated signalling in plants. Combined physiology and transcriptome analysis revealed the role of aquaporins in regulating hydraulic conductance in roots and leaves. The present review mainly focused on aquaporin functional activity during solute transport, plant development, abiotic stress response, and plant-microbe symbiosis. Genetically modified plants overexpressing aquaporin-encoding genes display improved agronomic and abiotic stress tolerance.
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Affiliation(s)
- Roshan Kumar Singh
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Rupesh Deshmukh
- National Agri-Food Biotechnology Institute, Mohali, 140306, Chandigarh, India
| | | | - Rekha Rani
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Manoj Prasad
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
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Wang B, Xie G, Liu Z, He R, Han J, Huang S, Liu L, Cheng X. Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice. FRONTIERS IN PLANT SCIENCE 2019; 10:759. [PMID: 31244876 PMCID: PMC6580931 DOI: 10.3389/fpls.2019.00759] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 05/24/2019] [Indexed: 05/30/2023]
Abstract
Alkaline stress (AS) is one of the abiotic stressful factors limiting plant's growth and development. Inorganic pyrophosphatase is usually involved in a variety of biological processes in plant in response to the abiotic stresses. Here, to clarify the responsive regulation of inorganic pyrophosphatase in rice under AS, the mutagenesis of the OsPPa6 gene encoding an inorganic pyrophosphatase in rice cv. Kitaake (Oryza sativa L. ssp. japonica) was performed by the CRISPR/Cas9 system. Two homozygous independent mutants with cas9-free were obtained by continuously screening. qPCR reveals that the OsPPa6 gene was significantly induced by AS, and the mutagenesis of the OsPPa6 gene apparently delayed rice's growth and development, especially under AS. Measurements demonstrate that the contents of pyrophosphate in the mutants were higher than those in the wild type under AS, however, the accumulation of inorganic phosphate, ATP, chlorophyll, sucrose, and starch in the mutants were decreased significantly, and the mutagenesis of the OsPPa6 gene remarkably lowered the net photosynthetic rate of rice mutants, thus reducing the contents of soluble sugar and proline, but remarkably increasing MDA, osmotic potentials and Na+/K+ ratio in the mutants under AS. Metabonomics measurement shows that the mutants obviously down-regulated the accumulation of phosphorylcholine, choline, anthranilic acid, apigenin, coniferol and dodecanoic acid, but up-regulated the accumulation of L-valine, alpha-ketoglutarate, phenylpyruvate and L-phenylalanine under AS. This study suggests that the OsPPa6 gene is an important osmotic regulatory factor in rice, and the gene-editing of CRISPR/Cas9-guided is an effective method evaluating the responsive regulation of the stress-induced gene, and simultaneously provides a scientific support for the application of the gene encoding a soluble inorganic pyrophosphatase in molecular breeding.
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Affiliation(s)
- Bing Wang
- Laboratory of Plant Nutrition and Biology, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Guoqiang Xie
- Jiujiang Academy of Agricultural Sciences, Jiujiang, China
| | - Zhonglai Liu
- Jiujiang Academy of Agricultural Sciences, Jiujiang, China
| | - Rui He
- Laboratory of Plant Nutrition and Biology, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jiao Han
- Laboratory of Plant Nutrition and Biology, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Shengcai Huang
- Laboratory of Plant Nutrition and Biology, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Laihua Liu
- Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Xianguo Cheng
- Laboratory of Plant Nutrition and Biology, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
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Farhat S, Jain N, Singh N, Sreevathsa R, Dash PK, Rai R, Yadav S, Kumar P, Sarkar AK, Jain A, Singh NK, Rai V. CRISPR-Cas9 directed genome engineering for enhancing salt stress tolerance in rice. Semin Cell Dev Biol 2019; 96:91-99. [PMID: 31075379 DOI: 10.1016/j.semcdb.2019.05.003] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 05/04/2019] [Accepted: 05/06/2019] [Indexed: 12/20/2022]
Abstract
Crop productivity in rice is harshly limited due to high concentration of salt in the soil. To understand the intricacies of the mechanism it is important to unravel the key pathways operating inside the plant cell. Emerging state-of-the art technologies have provided the tools to discover the key components inside the plant cell for salt tolerance. Among the molecular entities, transcription factors and/or other important components of sensing and signaling cascades have been the attractive targets and the role of NHX and SOS1 transporters amply described. Not only marker assisted programs but also transgenic approaches by using reverse genetic strategies (knockout or knockdown) or overexpression have been extensively used to engineer rice crop. CRISPR/Cas is an attractive paradigm and provides the feasibility for manipulating several genes simultaneously. Here, in this review we highlight some of the molecular entities that could be potentially targeted for generating rice amenable to sustain growth under high salinity conditions by employing CRISPR/Cas. We also try to address key questions for rice salt stress tolerance other than what is already known.
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Affiliation(s)
- Sufia Farhat
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Neha Jain
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Nisha Singh
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Rohini Sreevathsa
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Prasanta K Dash
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Rhitu Rai
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Sandeep Yadav
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India.
| | - Pramod Kumar
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India.
| | - Ananda K Sarkar
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India.
| | - Ajay Jain
- Department of Biotechnology, Amity University, Jaipur, India.
| | - Nagendra K Singh
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
| | - Vandna Rai
- National Institute for Plant Biotechnology, IARI, PUSA Campus, New Delhi 110012, India.
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Han L, Xiao C, Xiao B, Wang M, Liu J, Bhanbhro N, Khan A, Wang H, Wang H, Yang C. Proteomic profiling sheds light on alkali tolerance of common wheat (Triticum aestivum L.). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 138:58-64. [PMID: 30852238 DOI: 10.1016/j.plaphy.2019.02.024] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2018] [Revised: 02/22/2019] [Accepted: 02/26/2019] [Indexed: 05/25/2023]
Abstract
Alkali (high-pH) stress is an important factor limiting agricultural production and has complex effects on plant metabolism. Transcriptomics is widely used in the discovery of stress-response genes, but it provides only a rough estimation for gene expression. Proteomics may be more helpful than transcriptomics for the discovery and identification of stress-response genes. In this study, wheat plants were treated with sodic alkaline stress (50 mM, NaHCO3: Na2CO3 = 1:1; pH 9.7), and then proteomic analysis was carried out on control and stressed plants. We detected 3,104 proteins, including 69 alkaline stress-response proteins. Five superoxide dismutases, three malate dehydrogenases, three dehydrin proteins, and one V-ATPase protein were upregulated in sodic alkaline-stressed wheat roots. We propose that these salinity response proteins may be important for ion homeostasis and osmotic regulation of sodic alkaline-stressed wheat. Additionally, two malic enzymes and many enzymes involved in the tricarboxylic acid cycle (TCA) were downregulated in the roots. The upregulation of malate dehydrogenase and the downregulation of TCA enzymes and malic enzymes may enhance the accumulation of malate in sodic alkaline-stressed wheat roots. Previous studies have demonstrated that the accumulation of malate in roots is a crucial adaptive mechanism of wheat to sodic alkaline stress. Herein, our proteomics results provided molecular insights into this adaptive mechanism.
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Affiliation(s)
- Lei Han
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Chaoxia Xiao
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Binbin Xiao
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Meng Wang
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Jingtong Liu
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Nadeem Bhanbhro
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Adnan Khan
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Hao Wang
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Huan Wang
- Department of Agronomy, Jilin Agricultural University, Changchun, 130118, China
| | - Chunwu Yang
- Key Laboratory of Vegetation Ecology of Ministry of Education, Northeast Normal University, Changchun, 130024, China.
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iTRAQ-Based Protein Profiling and Biochemical Analysis of Two Contrasting Rice Genotypes Revealed Their Differential Responses to Salt Stress. Int J Mol Sci 2019; 20:ijms20030547. [PMID: 30696055 PMCID: PMC6387323 DOI: 10.3390/ijms20030547] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Revised: 01/20/2019] [Accepted: 01/24/2019] [Indexed: 12/17/2022] Open
Abstract
Salt stress is one of the key abiotic stresses causing huge productivity losses in rice. In addition, the differential sensitivity to salinity of different rice genotypes during different growth stages is a major issue in mitigating salt stress in rice. Further, information on quantitative proteomics in rice addressing such an issue is scarce. In the present study, an isobaric tags for relative and absolute quantitation (iTRAQ)-based comparative protein quantification was carried out to investigate the salinity-responsive proteins and related biochemical features of two contrasting rice genotypes—Nipponbare (NPBA, japonica) and Liangyoupeijiu (LYP9, indica), at the maximum tillering stage. The rice genotypes were exposed to four levels of salinity: 0 (control; CK), 1.5 (low salt stress; LS), 4.5 (moderate salt stress; MS), and 7.5 g of NaCl/kg dry soil (high salt stress, HS). The iTRAQ protein profiling under different salinity conditions identified a total of 5340 proteins with 1% FDR in both rice genotypes. In LYP9, comparisons of LS, MS, and HS compared with CK revealed the up-regulation of 28, 368, and 491 proteins, respectively. On the other hand, in NPBA, 239 and 337 proteins were differentially upregulated in LS and MS compared with CK, respectively. Functional characterization by KEGG and COG, along with the GO enrichment results, suggests that the differentially expressed proteins are mainly involved in regulation of salt stress responses, oxidation-reduction responses, photosynthesis, and carbohydrate metabolism. Biochemical analysis of the rice genotypes revealed that the Na+ and Cl− uptake from soil to the leaves via the roots was increased with increasing salt stress levels in both rice genotypes. Further, increasing the salinity levels resulted in increased cell membrane injury in both rice cultivars, however more severely in NPBA. Moreover, the rice root activity was found to be higher in LYP9 roots compared with NPBA under salt stress conditions, suggesting the positive role of rice root activity in mitigating salinity. Overall, the results from the study add further insights into the differential proteome dynamics in two contrasting rice genotypes with respect to salt tolerance, and imply the candidature of LYP9 to be a greater salt tolerant genotype over NPBA.
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Biradar H, Karan R, Subudhi PK. Transgene Pyramiding of Salt Responsive Protein 3-1 ( SaSRP3-1) and SaVHAc1 From Spartina alterniflora L. Enhances Salt Tolerance in Rice. FRONTIERS IN PLANT SCIENCE 2018; 9:1304. [PMID: 30258451 PMCID: PMC6143679 DOI: 10.3389/fpls.2018.01304] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Accepted: 08/17/2018] [Indexed: 05/13/2023]
Abstract
The transgenic technology using a single gene has been widely used for crop improvement. But the transgenic pyramiding of multiple genes, a promising alternative especially for enhancing complexly inherited abiotic stress tolerance, has received little attention. Here, we developed and evaluated transgenic rice lines with a single Salt Responsive Protein 3-1 (SaSRP3-1) gene as well as pyramids with two-genes SaSRP3-1 and Vacuolar H+-ATPase subunit c1 (SaVHAc1) derived from a halophyte grass Spartina alterniflora L. for salt tolerance at seedling, vegetative, and reproductive stages. The overexpression of this novel gene SaSRP3-1 resulted in significantly better growth of E. coli with the recombinant plasmid under 600 mM NaCl stress condition compared with the control. During early seedling and vegetative stages, the single gene and pyramided transgenic rice plants showed enhanced tolerance to salt stress with minimal wilting and drying symptoms, improved shoot and root growth, and significantly higher chlorophyll content, relative water content, and K+/Na+ ratio than the control plants. The salt stress screening during reproductive stage revealed that the transgenic plants with single gene and pyramids had better grain filling, whereas the pyramided plants showed significantly higher grain yield and higher grain weight compared to control plants. Our study demonstrated transgenic pyramiding as a viable approach to achieve higher level of salt tolerance in crop plants.
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Affiliation(s)
- Hanamareddy Biradar
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Ratna Karan
- Department of Agronomy, University of Florida, Gainesville, FL, United States
| | - Prasanta K. Subudhi
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
- *Correspondence: Prasanta K. Subudhi,
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